AlfalfaGEDB | MsaG003869

M. sativa ssp. caerulea / MsaG003869

KEGG: -
GO: GO:0001101 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010581 GO:0010604 GO:0010628 GO:0010675 GO:0010962 GO:0019219 GO:0019222 GO:0019725 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0032881 GO:0032885 GO:0033500 GO:0033993 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055082 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000904 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003869	XP_013468984.1	95.411	414	17	1	1	414	1	412	0.0	761

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003869	sp\|Q99090\|CPRF2_PETCR	54.460	426	157	12	1	414	1	401	5.96e-118	352

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003869	tr\|A0A072VN13\|A0A072VN13_MEDTR	95.411	414	17	1	1	414	1	412	0.0	761

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003869	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000223	MsaG003869	0.822371	4.325805e-53	1.013238e-50
MsaG000532	MsaG003869	0.814598	2.454349e-51	4.696464e-49
MsaG001134	MsaG003869	0.836839	1.354391e-56	4.794283e-54
MsaG001810	MsaG003869	0.803011	7.186496e-49	1.040467e-46
MsaG003869	MsaG005897	0.822808	3.427214e-53	8.122827e-51
MsaG003869	MsaG006699	0.804045	4.396266e-49	6.519406e-47
MsaG003869	MsaG007455	0.838926	3.962145e-57	1.495721e-54
MsaG003869	MsaG009707	0.848467	1.139441e-59	5.860853e-57
MsaG003869	MsaG018798	0.856077	7.961100e-62	5.348143e-59
MsaG003869	MsaG020852	0.815643	1.441677e-51	2.832724e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003869	MtrunA17_Chr1g0190761	95.411	414	17	1	1	414	1	412	0.0	761
MsaG003869	MtrunA17_Chr7g0274141	54.839	403	161	9	1	401	1	384	1.43e-121	358
MsaG003869	MtrunA17_Chr3g0139301	52.593	135	57	4	177	307	96	227	2.11e-30	118
MsaG003869	MtrunA17_Chr1g0147491	59.504	121	45	2	180	300	143	259	4.76e-27	110
MsaG003869	MtrunA17_Chr3g0139571	59.459	74	30	0	209	282	1	74	1.61e-17	77.0
MsaG003869	MtrunA17_Chr4g0035414	41.304	92	54	0	208	299	28	119	3.60e-14	69.7
MsaG003869	MtrunA17_Chr7g0225661	41.346	104	55	1	179	282	59	156	7.66e-14	69.7
MsaG003869	MtrunA17_Chr8g0341311	45.055	91	45	1	192	282	61	146	8.02e-14	69.7
MsaG003869	MtrunA17_Chr3g0144941	38.043	92	57	0	208	299	28	119	1.53e-13	68.2
MsaG003869	MtrunA17_Chr6g0456061	47.297	74	39	0	210	283	90	163	2.11e-13	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003869	AT5G28770.2	45.185	405	126	15	1	402	1	312	1.35e-75	238
MsaG003869	AT5G28770.1	44.444	405	122	16	1	402	1	305	7.15e-71	226
MsaG003869	AT5G28770.3	48.944	284	86	10	1	283	1	226	7.93e-56	185
MsaG003869	AT4G02640.3	40.549	328	150	7	1	299	1	312	1.20e-49	173
MsaG003869	AT4G02640.2	40.549	328	150	7	1	299	1	312	1.33e-49	173
MsaG003869	AT4G02640.1	40.549	328	144	7	1	299	1	306	3.80e-49	172
MsaG003869	AT4G02640.4	40.549	328	144	7	1	299	1	306	4.79e-49	172
MsaG003869	AT3G54620.1	38.965	367	151	14	1	322	1	339	1.17e-43	157
MsaG003869	AT5G24800.1	44.444	189	92	5	139	318	51	235	5.52e-37	136
MsaG003869	AT5G28770.4	44.898	245	76	10	1	244	1	187	2.98e-33	124

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Find 128 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCTCCTCCGTTGCAC+CGG	0.457579	1:-63030950	MsaT003869.1:CDS
AAAGCGTTGGAACGCCCATT+CGG	0.499920	1:+63035557	None:intergenic
AACAATGCAGCAGTTGTAGG+TGG	0.555285	1:-63030987	MsaT003869.1:CDS
AACAGCTCCTCCGTTGCACC+GGG	0.530036	1:-63030949	MsaT003869.1:CDS
AAGAGGTGAAAATTCTACCT+TGG	0.544049	1:-63031965	MsaT003869.1:CDS
AAGCTAGCCACCCGGTGCAA+CGG	0.537945	1:+63030939	None:intergenic
ACAATGCAGCAGTTGTAGGT+GGG	0.644613	1:-63030986	MsaT003869.1:CDS
ACAGAGGAAGAAGAAGGAGA+AGG	0.637590	1:+63035516	None:intergenic
ACCGGTGTTGTCAGCAACAG+AGG	0.579200	1:+63035500	None:intergenic
ACGAAATCCCCGACAACCTA+TGG	0.501904	1:-63035644	MsaT003869.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	63030866	63035688	63030866	ID=MsaG003869
Chr1	mRNA	63030866	63035688	63030866	ID=MsaT003869.1;Parent=MsaG003869
Chr1	exon	63030866	63031267	63030866	ID=MsaT003869.1.exon6;Parent=MsaT003869.1
Chr1	CDS	63030866	63031267	63030866	ID=cds.MsaT003869.1;Parent=MsaT003869.1
Chr1	exon	63031873	63031998	63031873	ID=MsaT003869.1.exon5;Parent=MsaT003869.1
Chr1	CDS	63031873	63031998	63031873	ID=cds.MsaT003869.1;Parent=MsaT003869.1
Chr1	exon	63032114	63032189	63032114	ID=MsaT003869.1.exon4;Parent=MsaT003869.1
Chr1	CDS	63032114	63032189	63032114	ID=cds.MsaT003869.1;Parent=MsaT003869.1
Chr1	exon	63033118	63033337	63033118	ID=MsaT003869.1.exon3;Parent=MsaT003869.1
Chr1	CDS	63033118	63033337	63033118	ID=cds.MsaT003869.1;Parent=MsaT003869.1
Chr1	exon	63033624	63033720	63033624	ID=MsaT003869.1.exon2;Parent=MsaT003869.1
Chr1	CDS	63033624	63033720	63033624	ID=cds.MsaT003869.1;Parent=MsaT003869.1
Chr1	exon	63035365	63035688	63035365	ID=MsaT003869.1.exon1;Parent=MsaT003869.1
Chr1	CDS	63035365	63035688	63035365	ID=cds.MsaT003869.1;Parent=MsaT003869.1

Gene Sequence

>MsaT003869.1

ATGGATAGGGTATTCTCAGTGGACGAAATCCCCGACAACCTATGGTCACCGCAGATTCATGTCACCGGCGGCGCCGGCGATGAATCCTCCAAGATGAGTCGCAGCGCTTCCGAATGGGCGTTCCAACGCTTTCTGCAAGAAGCTGCCACACCTTCTCCTTCTTCTTCCTCTGTTGCTGACAACACCGGTTTTGCCGATGCTGCACCAAAAGACGGTGCCGTTTTGCCCAATGGACCACCTCCGGTGGCCGTTGATTCCGAAGAATATCGGGCTGTTCTGAAGAGTAAGCTGAATCAGGCATGCGCTGCGGTTGCCATGACTAGGGGATCTTTGACTAAATCTCAAGACCTAGCCACTTTTCCTGAGAATGGACCACAGTCCTCTAATGCTACTAAAGTTGGATCTCAGCCCATTTCTGAAGGATCTGTTCCTTCTGGAAGCGATCCACCTATATTACAAGATAAAGATGCCAAGGTACCACCTGCGATCCCTTCCATACCGCCTGTGCAGAAAAAAACCATTGTTGCCATTAGGCCATCAACAAGTGGATCATCAAGAGAACAGTCTGATGATGACGAAGCTGAGGGAGAGACATATATGATTGACAGCACGGACCCTACTGACGTAAAACGAGTAAGGAGGATGCTTTCCAATAGAGAGTCAGCCAGGCGCTCAAGAAGAAGAAAGCAGGCTCATTTAACTGAGTTGGAAACACAGGTTTCACAATTAAGAGGTGAAAATTCTACCTTGGTAAAGCGTCTTACTGATGTGAACCAAAAGTACACTGATTCTGCGGTTGACAACAGAGTACTGAAAGCTGATGTTGAAACGTTAAGAGCAAAGGTAAAGATGGCTGAAGAGACTGTGAAAAGAGTTACCGGATTGAACCCATTGTTTCATGTCATGCCTGACATGTCATCAATGGGGATGCCAGCATTTGATGGAAGCCCCTCAGACAATTCAGCAGATGCAGCTGTTCCTGTGCAAGACGATCCACATCATCATTTCTATCAACCCACATCTATTAATCCTATGCCATGTCATGATATGAGAGTCAACAATGGGTTGGGAGAAATTTCTTCAATTGAAAATGTGCAGCCAAACAATGCAGCAGTTGTAGGTGGGAACAAGATGGGTCAAACAGCTCCTCCGTTGCACCGGGTGGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGCGGTGTCGATTCTTGTGGACCTTCTCCTAATGGAGAGCAGTAA

Protein sequence

>MsaT003869.1

MDRVFSVDEIPDNLWSPQIHVTGGAGDESSKMSRSASEWAFQRFLQEAATPSPSSSSVADNTGFADAAPKDGAVLPNGPPPVAVDSEEYRAVLKSKLNQACAAVAMTRGSLTKSQDLATFPENGPQSSNATKVGSQPISEGSVPSGSDPPILQDKDAKVPPAIPSIPPVQKKTIVAIRPSTSGSSREQSDDDEAEGETYMIDSTDPTDVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSTLVKRLTDVNQKYTDSAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFHVMPDMSSMGMPAFDGSPSDNSADAAVPVQDDPHHHFYQPTSINPMPCHDMRVNNGLGEISSIENVQPNNAAVVGGNKMGQTAPPLHRVASLEHLQKRIRGGGVDSCGPSPNGEQ*