AlfalfaGEDB | MsaG003894

M. sativa ssp. caerulea / MsaG003894

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04504.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003894	XP_003591032.2	89.362	376	34	2	1	376	1	370	0.0	605

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003894	sp\|F4K5T4\|STKLU_ARATH	41.053	380	172	14	43	382	60	427	1.45e-68	225

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003894	tr\|G7I7E7\|G7I7E7_MEDTR	89.362	376	34	2	1	376	1	370	0.0	605

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003894	TF	GeBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG003894	0.800870	1.969781e-48	2.716030e-46
MsaG000135	MsaG003894	0.847490	2.112732e-59	1.051778e-56
MsaG000325	MsaG003894	0.829933	7.009347e-55	2.024691e-52
MsaG000412	MsaG003894	0.830418	5.342387e-55	1.564729e-52
MsaG000419	MsaG003894	0.807410	8.707334e-50	1.397068e-47
MsaG000459	MsaG003894	0.852109	1.096904e-60	6.396615e-58
MsaG000707	MsaG003894	0.846699	3.473589e-59	1.683806e-56
MsaG001273	MsaG003894	0.856908	4.550120e-62	3.150942e-59
MsaG001551	MsaG003894	0.813014	5.460344e-51	1.004219e-48
MsaG001730	MsaG003894	0.811631	1.090660e-50	1.938265e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003894	MtrunA17_Chr1g0191021	89.362	376	34	2	1	376	1	370	0.0	605
MsaG003894	MtrunA17_Chr7g0273821	42.222	405	151	14	49	381	45	438	1.54e-85	267
MsaG003894	MtrunA17_Chr1g0191011	37.584	298	132	10	88	378	123	373	6.22e-48	167
MsaG003894	MtrunA17_Chr3g0113131	37.037	135	75	3	97	231	153	277	4.69e-16	79.0
MsaG003894	MtrunA17_Chr2g0280431	34.615	104	58	3	92	195	199	292	3.23e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003894	AT5G28040.2	41.053	380	172	14	43	382	60	427	1.47e-69	225
MsaG003894	AT5G28040.1	41.053	380	172	14	43	382	60	427	1.47e-69	225
MsaG003894	AT3G04930.1	39.211	431	181	17	20	377	29	451	3.93e-59	199
MsaG003894	AT3G04930.2	38.841	345	146	15	20	307	29	365	2.75e-42	153
MsaG003894	AT4G00390.1	39.103	156	78	4	50	204	115	254	2.94e-22	97.4
MsaG003894	AT1G61730.1	37.342	158	89	3	38	194	100	248	7.21e-22	96.7
MsaG003894	AT4G25210.1	36.196	163	69	5	65	194	81	241	1.94e-20	92.4
MsaG003894	AT4G01260.1	38.994	159	70	7	61	194	51	207	5.54e-19	87.4
MsaG003894	AT4G00610.1	30.986	142	89	2	56	197	108	240	3.51e-17	82.4
MsaG003894	AT1G44810.1	38.889	108	60	2	92	199	117	218	2.12e-16	79.7

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Find 114 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCGCTGGATGAAAAG+TGG	0.594253	1:+63366352	MsaT003894.1:CDS
AAATGAGAAGAATTAGGGTT+AGG	0.345124	1:-63365979	None:intergenic
AACGGTAATTCAACGCCAAT+TGG	0.467910	1:+63365913	MsaT003894.1:CDS
AAGAATTAGGGTTAGGGTTA+GGG	0.289966	1:-63365972	None:intergenic
AAGAGAAGACCAGCGATTCG+CGG	0.508453	1:+63365596	MsaT003894.1:CDS
AATCATGCACATAATGTACC+TGG	0.574034	1:+63366153	MsaT003894.1:CDS
AATGAGAAGAATTAGGGTTA+GGG	0.412685	1:-63365978	None:intergenic
AATGTACCTGGATTAATCCC+TGG	0.555659	1:+63366165	MsaT003894.1:CDS
ACCAAAAGGACTCCCACTCA+TGG	0.598783	1:-63366250	None:intergenic
ACCAGCTTGTTGATAAGCTT+CGG	0.431916	1:+63365773	MsaT003894.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	63365337	63366521	63365337	ID=MsaG003894
Chr1	mRNA	63365337	63366521	63365337	ID=MsaT003894.1;Parent=MsaG003894
Chr1	exon	63365337	63366521	63365337	ID=MsaT003894.1.exon1;Parent=MsaT003894.1
Chr1	CDS	63365337	63366521	63365337	ID=cds.MsaT003894.1;Parent=MsaT003894.1

Gene Sequence

>MsaT003894.1

ATGGCATTCTCTCGAAACGGCGTGGTTATCCCCACCCACGATGATTACGCCGACATCGAGGGAGAAGACGACGACGATTTAGCAGAAGAGGACAACTATTTTGTCCAACCAAACACCGACCACCACTATCAAACCGAACAATCTCCGTCAACCTTCGCCACCGCCGCTGTCCCCACCTCCGTCATCTTAGCCCTACCACACGCCTCCGCATCAGCAACAACCATCGACGGCTCCCCTGAACCAAAACGGGAGCCAATGGAAGAGAAGACCAGCGATTCGCGGAAGCTTTTCCAGCGTATCTGGACTGAAGAAGACGAGATTACGATTCTTCAAGGTTTTCTCGATTACAACGCGAATCGTGAATCGTCTTATCATAACGATACTGGATCGTTTTATGACCACATGAAGGGGAAGATTCAGCTGGATTTCACCAAGAACCAGCTTGTTGATAAGCTTCGGCGGTTGAAGAAGAAATACCGTACTGCTCTCCAGAAATTTGATTCTGGTAAGGATTTTGTTTTCAAGAGTGCTCATGATCAAGCTACTTTTGAAATTTCTCACAAAATCTGGGGCAGTAACGGTAATTCAACGCCAATTGGTGTACCTGTTGATGAAGAGGAGGAAATGAGCCCAAACCCTAACCCTAACCCTAATTCTTCTCATTTAATTGAGAAGAAAGCTGCGCAATCTCGCAAGAGATCGCGGGCAGCTGAGGAGGAAAAGTGTGAGTTGACTGATTCTAGAGATAATCATCAGAATAACTCCGGTAATACCAATAGCAGCAATGTGGATGAAAATCGTGATAAAAGTAACGGTAATCATGCACATAATGTACCTGGATTAATCCCTGGATTAATCGAAGAGACCATGAAGAGCTGTTTGACACCGGTGTTGAAGGAGTTATTGAATGCTACCATGAGTGGGAGTCCTTTTGGTCTTGGGGGAAGAGGGTTTGGAGCTGGAGCTTTTTCAATGAATACTGTGCCATTTGGGTTTTTGAATTTGGGGGGCAGAGAAAAGGCGCTGGATGAAAAGTGGCGGAAGCAGCAGATCTTGGAGCTGGAGGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATGAAATCAAGGTTGCGATCGAGGAGTTGAGATCGAATGCTGGAGCTGGAGCCGGAGCTGGAGGTAGTGGAAATAATACCAATCAATAG

Protein sequence

>MsaT003894.1

MAFSRNGVVIPTHDDYADIEGEDDDDLAEEDNYFVQPNTDHHYQTEQSPSTFATAAVPTSVILALPHASASATTIDGSPEPKREPMEEKTSDSRKLFQRIWTEEDEITILQGFLDYNANRESSYHNDTGSFYDHMKGKIQLDFTKNQLVDKLRRLKKKYRTALQKFDSGKDFVFKSAHDQATFEISHKIWGSNGNSTPIGVPVDEEEEMSPNPNPNPNSSHLIEKKAAQSRKRSRAAEEEKCELTDSRDNHQNNSGNTNSSNVDENRDKSNGNHAHNVPGLIPGLIEETMKSCLTPVLKELLNATMSGSPFGLGGRGFGAGAFSMNTVPFGFLNLGGREKALDEKWRKQQILELEVYSKRLELVQDEIKVAIEELRSNAGAGAGAGGSGNNTNQ*