AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG003901


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003901 MtrunA17_Chr1g0191141 82.146 1109 150 6 21 1094 8 1103 0.0 1844
MsaG003901 MtrunA17_Chr7g0224051 63.265 1127 323 17 47 1093 1 1116 0.0 1358
MsaG003901 MtrunA17_Chr3g0114161 67.640 856 220 11 292 1093 395 1247 0.0 1113
MsaG003901 MtrunA17_Chr3g0114161 64.966 294 89 4 21 300 25 318 2.74e-111 375
MsaG003901 MtrunA17_Chr5g0437621 55.621 854 315 18 297 1093 457 1303 0.0 875
MsaG003901 MtrunA17_Chr5g0437621 43.438 320 143 8 5 299 4 310 3.94e-59 222
MsaG003901 MtrunA17_Chr7g0224031 66.372 226 75 1 649 873 17 242 2.97e-95 303
MsaG003901 MtrunA17_Chr7g0225791 31.448 725 416 18 398 1074 577 1268 2.61e-94 328
MsaG003901 MtrunA17_Chr7g0233031 31.389 720 403 16 416 1080 549 1232 2.76e-93 324
MsaG003901 MtrunA17_Chr7g0233021 31.755 718 390 17 416 1074 537 1213 9.14e-92 320
MsaG003901 MtrunA17_Chr4g0047081 31.163 722 403 17 416 1084 548 1228 9.88e-92 320
MsaG003901 MtrunA17_Chr7g0232971 31.012 761 405 21 398 1089 584 1293 7.85e-89 312
MsaG003901 MtrunA17_Chr7g0233001 32.331 532 304 14 576 1084 15 513 3.82e-69 241
MsaG003901 MtrunA17_Chr2g0296421 28.741 675 374 18 411 1049 398 1001 9.62e-68 247
MsaG003901 MtrunA17_Chr7g0232991 29.140 628 339 16 524 1080 54 646 5.47e-67 239
MsaG003901 MtrunA17_Chr8g0352361 28.571 693 385 21 394 1049 233 852 2.85e-65 238
MsaG003901 MtrunA17_Chr2g0320781 36.032 247 142 7 802 1042 4 240 1.12e-38 144
MsaG003901 MtrunA17_Chr7g0224021 49.091 110 29 1 513 595 2 111 2.87e-26 104
MsaG003901 MtrunA17_Chr8g0384531 24.694 571 309 23 530 1041 372 880 1.16e-24 111
MsaG003901 MtrunA17_Chr5g0393461 22.648 627 360 18 505 1079 163 716 3.70e-24 109
MsaG003901 MtrunA17_Chr5g0403921 24.764 529 308 18 578 1092 236 688 6.64e-21 99.0
MsaG003901 MtrunA17_Chr3g0137091 24.893 466 275 13 578 1032 342 743 3.47e-19 94.0
MsaG003901 MtrunA17_Chr1g0190381 34.211 152 90 3 912 1054 205 355 2.01e-18 90.5
MsaG003901 MtrunA17_Chr5g0442141 22.505 471 286 12 578 1038 670 1071 2.96e-15 81.3
MsaG003901 MtrunA17_Chr5g0394201 23.587 513 305 18 578 1081 416 850 1.46e-14 79.0
MsaG003901 MtrunA17_Chr3g0095091 23.789 475 275 16 578 1038 624 1025 3.28e-14 77.8
MsaG003901 MtrunA17_Chr2g0286291 22.385 478 289 16 578 1051 244 643 8.73e-14 76.3
MsaG003901 MtrunA17_Chr4g0040301 32.335 167 100 5 904 1063 389 549 1.08e-13 75.9
MsaG003901 MtrunA17_Chr4g0066741 21.622 370 244 10 686 1051 313 640 4.23e-13 73.9
MsaG003901 MtrunA17_Chr3g0114111 88.235 34 4 0 1047 1080 1 34 1.92e-12 63.5
MsaG003901 MtrunA17_Chr7g0257101 28.977 176 117 5 876 1050 1173 1341 1.44e-11 69.3
MsaG003901 MtrunA17_Chr7g0255821 38.298 94 57 1 940 1032 690 783 9.59e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003901 AT3G42670.4 53.827 797 303 13 352 1094 472 1257 0.0 811
MsaG003901 AT3G42670.4 36.333 300 162 8 4 290 2 285 2.46e-44 176
MsaG003901 AT3G42670.2 53.827 797 301 13 352 1094 472 1255 0.0 810
MsaG003901 AT3G42670.2 36.333 300 162 8 4 290 2 285 2.40e-44 176
MsaG003901 AT3G42670.3 53.827 797 301 13 352 1094 472 1255 0.0 810
MsaG003901 AT3G42670.3 36.333 300 162 8 4 290 2 285 2.40e-44 176
MsaG003901 AT3G42670.1 53.827 797 301 13 352 1094 472 1255 0.0 810
MsaG003901 AT3G42670.1 36.333 300 162 8 4 290 2 285 2.40e-44 176
MsaG003901 AT5G20420.1 51.401 821 334 11 331 1094 449 1261 0.0 795
MsaG003901 AT5G20420.1 35.759 316 155 8 4 294 2 294 1.19e-45 180
MsaG003901 AT1G05490.1 30.194 722 413 18 416 1078 695 1384 1.35e-83 298
MsaG003901 AT3G24340.1 29.469 716 417 17 405 1082 449 1114 6.47e-81 288
MsaG003901 AT2G16390.2 29.496 695 381 20 394 1049 226 850 1.72e-64 236
MsaG003901 AT2G16390.1 29.496 695 381 20 394 1049 223 847 2.05e-64 236
MsaG003901 AT2G21450.3 29.128 642 361 18 451 1049 92 682 1.72e-62 227
MsaG003901 AT2G21450.2 29.128 642 361 18 451 1049 190 780 2.45e-62 229
MsaG003901 AT2G21450.1 29.128 642 361 18 451 1049 183 773 4.03e-62 228
MsaG003901 AT3G19210.2 23.636 550 331 18 548 1073 220 704 5.12e-24 109
MsaG003901 AT3G19210.1 24.094 552 328 19 548 1073 220 706 7.48e-24 109
MsaG003901 AT3G19210.3 24.094 552 328 19 548 1073 220 706 1.34e-23 108
MsaG003901 AT5G63950.2 24.479 384 239 14 686 1041 495 855 4.66e-20 97.1
MsaG003901 AT5G63950.1 24.479 384 239 14 686 1041 512 872 5.17e-20 97.1
MsaG003901 AT2G25170.2 25.793 473 269 14 576 1032 338 744 4.14e-19 94.4
MsaG003901 AT2G25170.1 25.793 473 269 14 576 1032 321 727 4.44e-19 94.4
MsaG003901 AT2G25170.4 25.793 473 269 14 576 1032 321 727 4.44e-19 94.4
MsaG003901 AT2G25170.3 25.793 473 269 14 576 1032 347 753 5.17e-19 94.0
MsaG003901 AT4G31900.3 23.563 522 299 17 532 1032 214 656 3.51e-18 91.3
MsaG003901 AT4G31900.1 23.563 522 299 17 532 1032 214 656 3.52e-18 91.3
MsaG003901 AT4G31900.2 23.563 522 299 17 532 1032 173 615 4.62e-18 90.9
MsaG003901 AT1G08600.4 34.356 163 95 4 901 1054 1123 1282 1.54e-17 89.4
MsaG003901 AT1G08600.4 21.557 334 179 8 542 838 719 1006 7.71e-13 73.9
MsaG003901 AT1G08600.3 34.356 163 95 4 901 1054 1123 1282 1.54e-17 89.4
MsaG003901 AT1G08600.3 21.557 334 179 8 542 838 719 1006 7.71e-13 73.9
MsaG003901 AT1G08600.2 34.356 163 95 4 901 1054 1123 1282 1.54e-17 89.4
MsaG003901 AT1G08600.2 21.557 334 179 8 542 838 719 1006 7.71e-13 73.9
MsaG003901 AT1G08600.1 34.356 163 95 4 901 1054 1102 1261 1.74e-17 89.0
MsaG003901 AT2G13370.1 22.567 483 288 14 573 1041 670 1080 7.68e-17 87.0
MsaG003901 AT2G13370.2 22.567 483 288 14 573 1041 670 1080 7.68e-17 87.0
MsaG003901 AT2G13370.3 22.567 483 288 14 573 1041 670 1080 7.68e-17 87.0
MsaG003901 AT1G03750.1 32.955 176 104 6 896 1063 528 697 5.43e-15 80.5
MsaG003901 AT3G57300.1 29.545 176 116 5 876 1050 1187 1355 2.35e-12 72.4
MsaG003901 AT3G57300.4 29.545 176 116 5 876 1050 1187 1355 2.35e-12 72.4
MsaG003901 AT3G57300.2 29.545 176 116 5 876 1050 1220 1388 2.51e-12 72.0
MsaG003901 AT2G44980.1 24.147 381 239 13 687 1055 181 523 4.24e-12 71.2
MsaG003901 AT2G18760.4 37.500 96 59 1 954 1049 781 875 2.30e-11 68.9
MsaG003901 AT2G18760.1 37.500 96 59 1 954 1049 781 875 2.30e-11 68.9
MsaG003901 AT2G18760.2 37.500 96 59 1 954 1049 781 875 2.30e-11 68.9
MsaG003901 AT2G18760.7 37.500 96 59 1 954 1049 781 875 2.30e-11 68.9
MsaG003901 AT2G18760.5 37.500 96 59 1 954 1049 781 875 2.30e-11 68.9
MsaG003901 AT2G18760.6 37.500 96 59 1 954 1049 781 875 2.30e-11 68.9
MsaG003901 AT2G18760.3 37.500 96 59 1 954 1049 840 934 2.33e-11 68.9
MsaG003901 AT5G66750.1 29.341 167 113 2 913 1079 542 703 4.35e-11 67.8

Find 159 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTGTTTCAAAACAATTT+TGG 0.098097 1:+63527726 MsaT003901.1:CDS
TAAGAGAAGGTGGTTGTTTA+AGG 0.177258 1:+63525820 MsaT003901.1:CDS
AAACTAGACGAAAACAAATT+TGG 0.206644 1:+63528221 MsaT003901.1:CDS
TGCTTGATACCATTAGAATT+TGG 0.209817 1:-63527447 None:intergenic
AGAACTTCGTGAATAAATTT+TGG 0.216798 1:-63527780 None:intergenic
AACTTTGATGTGGTACTTCT+AGG 0.221583 1:-63527651 None:intergenic
CCAGGTAGAACCATTGATTT+TGG 0.226511 1:-63527420 None:intergenic
TATCGATTGGATGAACAAAT+TGG 0.242680 1:+63526563 MsaT003901.1:CDS
ATATGGATTTGATAGCTTTA+TGG 0.245952 1:+63525846 MsaT003901.1:CDS
TTTATCTTCTGTTCTCATTA+AGG 0.252520 1:-63527550 None:intergenic
AGACCTCCAATTTCGCTTCT+TGG 0.261495 1:-63525677 None:intergenic
TCGACCTGGTCAAGAGAAAA+TGG 0.262902 1:+63528604 MsaT003901.1:CDS
ACATCAAGTTATCTTCTTGA+TGG 0.278990 1:+63526148 MsaT003901.1:CDS
TCACTGATAGTTGGATCTTC+TGG 0.280474 1:-63526019 None:intergenic
TAATGGTATCAAGCATGATT+TGG 0.292292 1:+63527455 MsaT003901.1:CDS
AGTTATTTCGTTGAAGTCTT+TGG 0.292757 1:-63525343 None:intergenic
GGTAGGTGACAAGGCTAAAA+TGG 0.298106 1:+63526933 MsaT003901.1:intron
TATGGATTTGATAGCTTTAT+GGG 0.316460 1:+63525847 MsaT003901.1:CDS
CCAATGCCAAGAAGCGAAAT+TGG 0.318140 1:+63525671 MsaT003901.1:CDS
CCAAAGAAAATGATAGTGTT+TGG 0.318198 1:+63527059 MsaT003901.1:CDS
TTGAAGTTCAAAACATTCAT+AGG 0.322383 1:-63525596 None:intergenic
CAAGCTTGTGCATCAAGTTA+TGG 0.328101 1:+63525550 MsaT003901.1:CDS
AACAAATTTGGTTTGAGAAA+AGG 0.336871 1:+63528233 MsaT003901.1:CDS
AGTTCTTCTGATACTCTTCC+TGG 0.348560 1:+63527999 MsaT003901.1:CDS
AAAGTTGAGGAAGTGCTTAA+TGG 0.350370 1:+63527668 MsaT003901.1:CDS
GCAGAAACTGCAAAAGAAAA+TGG 0.357505 1:+63528076 MsaT003901.1:CDS
GCTCTTCATTGCCACAATCT+AGG 0.360216 1:+63525435 MsaT003901.1:CDS
CCAATTTCGCTTCTTGGCAT+TGG 0.361638 1:-63525671 None:intergenic
TAACCCATGACAAGAACAAT+AGG 0.363802 1:-63527513 None:intergenic
AAAATTTATTCACGAAGTTC+TGG 0.379765 1:+63527782 MsaT003901.1:CDS
AAGAAAATGGCGGGTTGTAC+TGG 0.380163 1:+63528089 MsaT003901.1:CDS
TTCATAGGACTACTAATATT+AGG 0.382189 1:-63525581 None:intergenic
GTGGTTGTTTAAGGAGCATA+TGG 0.383291 1:+63525829 MsaT003901.1:CDS
TGTCTTTCTTCACTGATAGT+TGG 0.384151 1:-63526028 None:intergenic
ATATGTCAATTCCAGGTCTT+AGG 0.387141 1:-63524977 None:intergenic
AAGCTTGTGCATCAAGTTAT+GGG 0.390339 1:+63525551 MsaT003901.1:CDS
AGGTGGTGATAATGTTTCTT+CGG 0.390951 1:+63525766 MsaT003901.1:CDS
AGTAAAATTCTCAATGTTGC+TGG 0.393610 1:-63527696 None:intergenic
CATGTGTAGAGTGTGGTCTT+TGG 0.395080 1:-63527315 None:intergenic
CCTGGAGTTCCAAATTCTAA+TGG 0.399610 1:+63527438 MsaT003901.1:CDS
GCTCAAAACAAATCTTACTT+TGG 0.400942 1:-63528258 None:intergenic
GGTGGTGATAATGTTTCTTC+GGG 0.402375 1:+63525767 MsaT003901.1:CDS
AATTCCAGGTCTTAGGAAAC+TGG 0.403179 1:-63524970 None:intergenic
CAAAGAAAATGATAGTGTTT+GGG 0.407919 1:+63527060 MsaT003901.1:CDS
GGTAGAAAATCCTGATGATT+TGG 0.409165 1:+63526093 MsaT003901.1:CDS
CACCCTATTGTTCTTGTCAT+GGG 0.409381 1:+63527510 MsaT003901.1:CDS
GATAAATTTGAAGATCGTTA+TGG 0.412152 1:+63528449 MsaT003901.1:CDS
AAAGAGATTCTGCAACTAAC+TGG 0.420585 1:+63528392 MsaT003901.1:CDS
TTGGTGTCGTCAAATGTCTC+TGG 0.420957 1:-63527401 None:intergenic
ATCATGTTCACATGTTTCCT+TGG 0.426716 1:-63526540 None:intergenic
TCAACTGATGCTACTGATCT+TGG 0.430086 1:+63527025 MsaT003901.1:CDS
ACGCGCGAGAAAATTCTTCT+TGG 0.431056 1:+63527869 MsaT003901.1:CDS
AAGGAAGAGGATAATGTGAT+TGG 0.437162 1:+63525299 MsaT003901.1:CDS
ACACCCTATTGTTCTTGTCA+TGG 0.438385 1:+63527509 MsaT003901.1:CDS
TACGTAATGTTCAAGTTGTA+TGG 0.439233 1:-63525720 None:intergenic
GTCTTTGGAGCTATGACTAA+TGG 0.446961 1:-63527300 None:intergenic
TCTATATTTATCTTCCTCCA+TGG 0.451446 1:-63528657 None:intergenic
TTGAACTTCAAATCAGAAAA+CGG 0.451497 1:+63525608 MsaT003901.1:CDS
CTGATGATTTGGCTGGCATA+TGG 0.454793 1:+63526104 MsaT003901.1:CDS
AGCACAGATATGTCAATTCC+AGG 0.458031 1:-63524984 None:intergenic
TACTATGAGTTTGTTGTGCA+TGG 0.462547 1:-63524893 None:intergenic
TCAATCAATGCTTGTTCTGA+AGG 0.465693 1:+63528494 MsaT003901.1:CDS
TATCGATGATCATGAAGAAC+AGG 0.466478 1:+63525916 MsaT003901.1:CDS
GCATTTGAAGCAGTATTGAA+TGG 0.467351 1:+63524810 MsaT003901.1:intron
CCATTAGAATTTGGAACTCC+AGG 0.476634 1:-63527438 None:intergenic
GTATATCACTTGTTGATGAC+TGG 0.488667 1:+63528632 MsaT003901.1:CDS
TACCGCGTCATCTTTAAAGA+AGG 0.495527 1:+63525499 MsaT003901.1:CDS
TTTGACGACACCAAAATCAA+TGG 0.495623 1:+63527410 MsaT003901.1:CDS
CATATGCCAGCCAAATCATC+AGG 0.497067 1:-63526103 None:intergenic
AATCTTCTCAGCTTGCCATT+CGG 0.505551 1:-63528744 None:intergenic
TATTTCGTTGAAGTCTTTGG+AGG 0.508106 1:-63525340 None:intergenic
AATCTCACGTGTGATGAGTA+AGG 0.509552 1:+63528283 MsaT003901.1:CDS
AGATTGTAATGATGAAAAGT+TGG 0.511319 1:+63525742 MsaT003901.1:CDS
GTAATTTGTCATCAGACATC+CGG 0.513031 1:+63524913 MsaT003901.1:CDS
GCGCATGGCTAAAGCATTGA+GGG 0.513248 1:+63527590 MsaT003901.1:CDS
TGCTCCAGTTTCCTAAGACC+TGG 0.515668 1:+63524966 MsaT003901.1:CDS
CATGAAATCGACATGAACAT+TGG 0.516088 1:-63525226 None:intergenic
TTGTACTGGTTACTCTCTTG+AGG 0.516966 1:+63528103 MsaT003901.1:CDS
CTTGTTGATGACTGGATCCA+TGG 0.517661 1:+63528640 MsaT003901.1:CDS
GAAGAACTACTTGGAAAGAG+TGG 0.517977 1:+63528678 MsaT003901.1:CDS
AAGCAGTATTGAATGGCTCA+TGG 0.520661 1:+63524817 MsaT003901.1:CDS
GTCTCTGGCTTCGACAGTTG+TGG 0.521572 1:-63527386 None:intergenic
GAAACAATGCAGTGAAGATA+CGG 0.522442 1:+63526967 MsaT003901.1:CDS
TTATCTTCTTGATGGAAATG+AGG 0.528274 1:+63526156 MsaT003901.1:CDS
GGTTGCATTTGTCATAAGAT+CGG 0.534985 1:+63525520 MsaT003901.1:CDS
TGAAGAAAGACAGTTTGAGC+AGG 0.538289 1:+63526039 MsaT003901.1:CDS
TATGATGATCAAGGTTCACT+TGG 0.538490 1:+63525257 MsaT003901.1:CDS
AACCCATGACAAGAACAATA+GGG 0.541871 1:-63527512 None:intergenic
TGATGATTTGGCTGGCATAT+GGG 0.542896 1:+63526105 MsaT003901.1:CDS
TTCTCAGCTTGCCATTCGGA+AGG 0.544538 1:-63528740 None:intergenic
TTGTGCATGGAGGAAATGTA+TGG 0.544715 1:-63524880 None:intergenic
CGTATCGAAAAGCGGTGATG+AGG 0.549235 1:+63526072 MsaT003901.1:CDS
AATGTATATATTTGCAAACC+AGG 0.552272 1:-63528017 None:intergenic
CCAAAATCAATGGTTCTACC+TGG 0.556365 1:+63527420 MsaT003901.1:CDS
GAAAATCCTGATGATTTGGC+TGG 0.557990 1:+63526097 MsaT003901.1:CDS
TTACGATAATTAGCATCGAA+TGG 0.560548 1:-63524319 None:intergenic
ATAAATATAGAAGAACTACT+TGG 0.563098 1:+63528669 MsaT003901.1:CDS
TTAGATTCTAAGTACAGAAG+AGG 0.564016 1:+63527810 MsaT003901.1:CDS
AGATTGAAGATGAAATACTC+AGG 0.564407 1:+63528762 MsaT003901.1:CDS
TGACACAAATAAAGAATCCA+AGG 0.564564 1:+63526523 MsaT003901.1:CDS
AAGAACTACTTGGAAAGAGT+GGG 0.567137 1:+63528679 MsaT003901.1:CDS
GCGCGTGCCTCTAGTAAATG+AGG 0.568077 1:-63527852 None:intergenic
TCATCAAGTATCAAGAGTCC+AGG 0.569191 1:-63527618 None:intergenic
AGCGCATGGCTAAAGCATTG+AGG 0.574680 1:+63527589 MsaT003901.1:CDS
GGAAGTAATCGATGCTTACA+TGG 0.577289 1:+63525979 MsaT003901.1:CDS
CACAATCTCGTGTTGTTCAG+TGG 0.577292 1:-63528054 None:intergenic
GAACATTGGTTATATTTGTG+AGG 0.579746 1:-63525212 None:intergenic
TACTCATCACACGTGAGATT+AGG 0.587315 1:-63528280 None:intergenic
ATATCCAATGGTAGGTGACA+AGG 0.588447 1:+63526924 MsaT003901.1:intron
AGCAGTATTGAATGGCTCAT+GGG 0.590169 1:+63524818 MsaT003901.1:CDS
AAAGCATTGAGGGAAAGTCC+TGG 0.590693 1:+63527600 MsaT003901.1:CDS
GCACTTCCTCAACTTTGATG+TGG 0.590805 1:-63527661 None:intergenic
CCGAAAAGTAACCTAGATTG+TGG 0.592635 1:-63525446 None:intergenic
AAACTGCAAAAGAAAATGGC+GGG 0.594652 1:+63528080 MsaT003901.1:CDS
AGATGAAATACTCAGGGAGA+TGG 0.595348 1:+63528769 MsaT003901.1:CDS
CTTCAACGAAATAACTGTGA+AGG 0.595665 1:+63525350 MsaT003901.1:CDS
CAAAGAAGCTTAAGAGAAGG+TGG 0.596830 1:+63525810 MsaT003901.1:CDS
ATGCCAAGAAGCGAAATTGG+AGG 0.597152 1:+63525674 MsaT003901.1:CDS
AGCATCGATTACTTCCTCGC+AGG 0.600178 1:-63525972 None:intergenic
GTATACAAAAGATCAAAAGC+TGG 0.604364 1:+63527481 MsaT003901.1:CDS
TGATAGTTGGATCTTCTGGT+AGG 0.608458 1:-63526015 None:intergenic
TGGACTCTTGATACTTGATG+AGG 0.608858 1:+63527620 MsaT003901.1:CDS
GGAATATACTGCCGTACATG+CGG 0.610029 1:+63526584 MsaT003901.1:CDS
ACTCAGGGAGATGGTTGAAG+AGG 0.610175 1:+63528778 MsaT003901.1:CDS
AGATGACGCGGTAACAAACC+AGG 0.611437 1:-63525489 None:intergenic
GCAGGGTGCAAATGCTGATG+AGG 0.611917 1:+63526493 MsaT003901.1:intron
CAAAGACCACACTCTACACA+TGG 0.613075 1:+63527316 MsaT003901.1:CDS
CACTCGGGTCAATACACCCA+TGG 0.615844 1:+63528141 MsaT003901.1:CDS
CAGAAGAGGCAAACTAGAGG+AGG 0.618526 1:+63527824 MsaT003901.1:CDS
AAAATCACACAGAAAGCGCA+TGG 0.619203 1:+63527575 MsaT003901.1:CDS
TGGATAAGATACACCGACAT+GGG 0.619325 1:-63527366 None:intergenic
GAGCATGATTATGACGGAGA+AGG 0.621402 1:+63525638 MsaT003901.1:CDS
TCACTTGAGCATGATTATGA+CGG 0.623465 1:+63525632 MsaT003901.1:CDS
GTCACAACCTTGCACCCGTG+AGG 0.623609 1:+63528324 MsaT003901.1:CDS
GATTGAAGATGAAATACTCA+GGG 0.623647 1:+63528763 MsaT003901.1:CDS
CATGAAGAACAGGATCATAG+AGG 0.626014 1:+63525926 MsaT003901.1:CDS
AAAATGGAATATTCCCATGT+CGG 0.627043 1:+63527353 MsaT003901.1:CDS
GAAGCGATACAATCCAAAGA+AGG 0.629502 1:+63525869 MsaT003901.1:CDS
ATGTGAACATGATTATCGAT+TGG 0.633134 1:+63526550 MsaT003901.1:CDS
GTACAGAAGAGGCAAACTAG+AGG 0.636952 1:+63527821 MsaT003901.1:CDS
GGACTCTTGATACTTGATGA+GGG 0.637751 1:+63527621 MsaT003901.1:CDS
AATTAACTCAAATATTGATG+CGG 0.638750 1:+63527908 MsaT003901.1:CDS
GCACAAAGAAGCTTAAGAGA+AGG 0.639100 1:+63525807 MsaT003901.1:CDS
GAATGGCTCATGGGAACCTG+TGG 0.639123 1:+63524827 MsaT003901.1:CDS
AAAGAGAAATCTGACACAAG+TGG 0.641751 1:+63527184 MsaT003901.1:CDS
GAAACTGCAAAAGAAAATGG+CGG 0.646622 1:+63528079 MsaT003901.1:CDS
TGTAATGATGAAAAGTTGGA+AGG 0.659731 1:+63525746 MsaT003901.1:CDS
GAAGTACCACATCAAAGTTG+AGG 0.659873 1:+63527655 MsaT003901.1:CDS
TTGTTGAAGATCCTTCCGAA+TGG 0.668864 1:+63528729 MsaT003901.1:CDS
AACCTTCTTTAAAGATGACG+CGG 0.674091 1:-63525501 None:intergenic
GTGGATAAGATACACCGACA+TGG 0.681468 1:-63527367 None:intergenic
AAAGAAAACGTATCGAAAAG+CGG 0.683079 1:+63526064 MsaT003901.1:CDS
GTCTACGACGCTCAAAACGT+AGG 0.683290 1:+63525696 MsaT003901.1:CDS
AATGATGAAAAGTTGGAAGG+TGG 0.696462 1:+63525749 MsaT003901.1:CDS
GGAAGCGCCTCATTTACTAG+AGG 0.697989 1:+63527845 MsaT003901.1:CDS
TATGAGTTTGTTGTGCATGG+AGG 0.703519 1:-63524890 None:intergenic
ATGACGGAGAAGGTGCAATG+CGG 0.752637 1:+63525648 MsaT003901.1:CDS
GTTAAATGCTGATACCTGCG+AGG 0.758695 1:+63525958 MsaT003901.1:CDS
GTTGATGACTGGATCCATGG+AGG 0.768053 1:+63528643 MsaT003901.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 63524280 63528856 63524280 ID=MsaG003901
Chr1 mRNA 63524280 63528856 63524280 ID=MsaT003901.1;Parent=MsaG003901
Chr1 exon 63524280 63524337 63524280 ID=MsaT003901.1.exon1;Parent=MsaT003901.1
Chr1 CDS 63524280 63524337 63524280 ID=cds.MsaT003901.1;Parent=MsaT003901.1
Chr1 exon 63524811 63525049 63524811 ID=MsaT003901.1.exon2;Parent=MsaT003901.1
Chr1 CDS 63524811 63525049 63524811 ID=cds.MsaT003901.1;Parent=MsaT003901.1
Chr1 exon 63525173 63526177 63525173 ID=MsaT003901.1.exon3;Parent=MsaT003901.1
Chr1 CDS 63525173 63526177 63525173 ID=cds.MsaT003901.1;Parent=MsaT003901.1
Chr1 exon 63526497 63526646 63526497 ID=MsaT003901.1.exon4;Parent=MsaT003901.1
Chr1 CDS 63526497 63526646 63526497 ID=cds.MsaT003901.1;Parent=MsaT003901.1
Chr1 exon 63526938 63527205 63526938 ID=MsaT003901.1.exon5;Parent=MsaT003901.1
Chr1 CDS 63526938 63527205 63526938 ID=cds.MsaT003901.1;Parent=MsaT003901.1
Chr1 exon 63527292 63528856 63527292 ID=MsaT003901.1.exon6;Parent=MsaT003901.1
Chr1 CDS 63527292 63528856 63527292 ID=cds.MsaT003901.1;Parent=MsaT003901.1
Gene Sequence

>MsaT003901.1

ATGCCGCCCGAAAAAAATTATTTGCATCAATCGAAACATCCATTCGATGCTAATTATCCATTTGAAGCAGTATTGAATGGCTCATGGGAACCTGTGGAACTCATAAAAATTGATTCTGGGAAAACTACCATACATTTCCTCCATGCACAACAAACTCATAGTAATTTGTCATCAGACATCCGGATAAGATCAAGAAAAGCTACTTCGACTGATTGCTCCAGTTTCCTAAGACCTGGAATTGACATATCTGTGCTATCAAGCTTTCGATACGATAAAAACTCACGTCAATCTAGCCCAATGTCGACTGATGCTAGAGTGAATTCCATACACAAAAAACCTCACAAATATAACCAATGTTCATGTCGATTTCATGTAAACTTTTATGATGATCAAGGTTCACTTGGCACTGAAATAAAAACTCTGAAGGAAGAGGATAATGTGATTGGAATTGAGAAAATTTTCATCCTCCAAAGACTTCAACGAAATAACTGTGAAGGATCGTTAAGAGAAAATGATTGTTCTGAAGTTAATTCTTTTAGAAGGGATTCATCAGAAGACTGCTCTTCATTGCCACAATCTAGGTTACTTTTCGGGAAGTTTTTGTCTGATCTTTCCTGGTTTGTTACCGCGTCATCTTTAAAGAAGGTTGCATTTGTCATAAGATCGGTTCAAAACAAGCTTGTGCATCAAGTTATGGGAAATGATCCTAATATTAGTAGTCCTATGAATGTTTTGAACTTCAAATCAGAAAACGGATCACTTGAGCATGATTATGACGGAGAAGGTGCAATGCGGCCAATGCCAAGAAGCGAAATTGGAGGTCTACGACGCTCAAAACGTAGGACCATACAACTTGAACATTACGTAGATTGTAATGATGAAAAGTTGGAAGGTGGTGATAATGTTTCTTCGGGACATGTTAATAATTTCTGCACAAAGAAGCTTAAGAGAAGGTGGTTGTTTAAGGAGCATATGGATTTGATAGCTTTATGGGAAGCGATACAATCCAAAGAAGGTGTTCAAAAGAAAACGACAAACAGTATCGATGATCATGAAGAACAGGATCATAGAGGCAGTAGAACGTTAAATGCTGATACCTGCGAGGAAGTAATCGATGCTTACATGGATAATTTTGATAGCCTACCAGAAGATCCAACTATCAGTGAAGAAAGACAGTTTGAGCAGGAGAAAGAAAACGTATCGAAAAGCGGTGATGAGGTAGAAAATCCTGATGATTTGGCTGGCATATGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAAATGAGGGTGCAAATGCTGATGAGGTTTTAGCTGACACAAATAAAGAATCCAAGGAAACATGTGAACATGATTATCGATTGGATGAACAAATTGGAATATACTGCCGTACATGCGGCTTTGTGAAAACTGAGATACGATACATTTCTGAACCCATTGTGACAAGGCTAAAATGGTACGAACAGAAGAAACAATGCAGTGAAGATACGGAACAAGTTGATGAAGATGATAATAATGATACGTTCTCAACTGATGCTACTGATCTTGGTGAACCTATATCCAAAGAAAATGATAGTGTTTGGGAATTGATTCCTGAACTCAAAGAAAACATGCATGCACACCAGAAAAAAGCTTTCGAGTTTCTTTGGAAAAACATTGCAGGGTCTATGGATCAATCACTCATGAAAGAGAAATCTGACACAAGTGAGAAAATACCATTAGTCATAGCTCCAAAGACCACACTCTACACATGGCAAAAAGAGTTCGAAAAATGGAATATTCCCATGTCGGTGTATCTTATCCACAACTGTCGAAGCCAGAGACATTTGACGACACCAAAATCAATGGTTCTACCTGGAGTTCCAAATTCTAATGGTATCAAGCATGATTTGGATTGTATACAAAAGATCAAAAGCTGGAATTCACACCCTATTGTTCTTGTCATGGGTTATTCTTCATTTTTAGCCTTAATGAGAACAGAAGATAAAAAAAAATCACACAGAAAGCGCATGGCTAAAGCATTGAGGGAAAGTCCTGGACTCTTGATACTTGATGAGGGACACAATCCTAGAAGTACCACATCAAAGTTGAGGAAGTGCTTAATGGATCTACCAGCAACATTGAGAATTTTACTTTCTGGCACTTTGTTTCAAAACAATTTTGGGGAATACTTCAACACTCTCTGTTTAGCCAGACCAAAATTTATTCACGAAGTTCTGGAAGAGTTAGATTCTAAGTACAGAAGAGGCAAACTAGAGGAGGAAGCGCCTCATTTACTAGAGGCACGCGCGAGAAAATTCTTCTTGGAGAACATTGAAAAGAAAATTAACTCAAATATTGATGCGGAAAAAATGAAGGGTGTAGATGTGCTTCGAAAAATCAAAAATGGTTTTATAGATGTTTATGACAGTGCAAGTTCTTCTGATACTCTTCCTGGTTTGCAAATATATACATTGCTCGTGAATGCATCCACTGAACAACACGAGATTGTGCAGAAACTGCAAAAGAAAATGGCGGGTTGTACTGGTTACTCTCTTGAGGTTGAGCTTTTGATAACACTCGGGTCAATACACCCATGGTTGATCAAAACAGCAGAAACATGTGCAGCTAAGTTTTTCTCCGGTGAAGAGTTGAAAAAACTAGACGAAAACAAATTTGGTTTGAGAAAAGGTTCCAAAGTAAGATTTGTTTTGAGCCTAATCTCACGTGTGATGAGTAAGGAAAAGATACTTATCTTCTGTCACAACCTTGCACCCGTGAGGTTTTTAGTAGAGTTATTTGAGAATCATTTTCAGTGGAAAAATGGTAAAGAGATTCTGCAACTAACTGGTGAACAAGACTTCTTTGAAAGAACAAATGTGATAGATAAATTTGAAGATCGTTATGGCGATTCAAAGATAATTCTTGCTTCAATCAATGCTTGTTCTGAAGGTATCAGTTTAACATCAGCTTCAAGAGTGATTTTCTTGGATTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGACCTGGTCAAGAGAAAATGGTTTATGTATATCACTTGTTGATGACTGGATCCATGGAGGAAGATAAATATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGTATGATTTTCAGTGAGGAGCTTGTTGAAGATCCTTCCGAATGGCAAGCTGAGAAGATTGAAGATGAAATACTCAGGGAGATGGTTGAAGAGGACAAGTCTAAACTCATTCATATGATTATGAAGAATGAAAAGACTTCAACAAGCTAA

Protein sequence

>MsaT003901.1

MPPEKNYLHQSKHPFDANYPFEAVLNGSWEPVELIKIDSGKTTIHFLHAQQTHSNLSSDIRIRSRKATSTDCSSFLRPGIDISVLSSFRYDKNSRQSSPMSTDARVNSIHKKPHKYNQCSCRFHVNFYDDQGSLGTEIKTLKEEDNVIGIEKIFILQRLQRNNCEGSLRENDCSEVNSFRRDSSEDCSSLPQSRLLFGKFLSDLSWFVTASSLKKVAFVIRSVQNKLVHQVMGNDPNISSPMNVLNFKSENGSLEHDYDGEGAMRPMPRSEIGGLRRSKRRTIQLEHYVDCNDEKLEGGDNVSSGHVNNFCTKKLKRRWLFKEHMDLIALWEAIQSKEGVQKKTTNSIDDHEEQDHRGSRTLNADTCEEVIDAYMDNFDSLPEDPTISEERQFEQEKENVSKSGDEVENPDDLAGIWEEMNTALTSSYLLDGNEGANADEVLADTNKESKETCEHDYRLDEQIGIYCRTCGFVKTEIRYISEPIVTRLKWYEQKKQCSEDTEQVDEDDNNDTFSTDATDLGEPISKENDSVWELIPELKENMHAHQKKAFEFLWKNIAGSMDQSLMKEKSDTSEKIPLVIAPKTTLYTWQKEFEKWNIPMSVYLIHNCRSQRHLTTPKSMVLPGVPNSNGIKHDLDCIQKIKSWNSHPIVLVMGYSSFLALMRTEDKKKSHRKRMAKALRESPGLLILDEGHNPRSTTSKLRKCLMDLPATLRILLSGTLFQNNFGEYFNTLCLARPKFIHEVLEELDSKYRRGKLEEEAPHLLEARARKFFLENIEKKINSNIDAEKMKGVDVLRKIKNGFIDVYDSASSSDTLPGLQIYTLLVNASTEQHEIVQKLQKKMAGCTGYSLEVELLITLGSIHPWLIKTAETCAAKFFSGEELKKLDENKFGLRKGSKVRFVLSLISRVMSKEKILIFCHNLAPVRFLVELFENHFQWKNGKEILQLTGEQDFFERTNVIDKFEDRYGDSKIILASINACSEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQEKMVYVYHLLMTGSMEEDKYRRTTWKEWVSCMIFSEELVEDPSEWQAEKIEDEILREMVEEDKSKLIHMIMKNEKTSTS*