AlfalfaGEDB | MsaG004058

M. sativa ssp. caerulea / MsaG004058

KEGG: K13152
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:1990904
PFAM: PF06220.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004058	XP_003591237.1	86.719	128	11	2	1	128	1	122	1.92e-66	207

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004058	sp\|Q0JP11\|C3H3_ORYSJ	43.787	169	52	5	1	128	1	167	8.87e-37	126

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004058	G7IAA7	86.719	128	11	2	1	128	1	122	9.15e-67	207

TFs/TRs:

Gene ID	Type	Classification
MsaG004058	TF	C3H

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004058	MtrunA17_Chr1g0193071	86.719	128	11	2	1	128	1	122	1.76e-70	207

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004058	AT5G26749.1	40.136	147	69	2	1	128	1	147	5.47e-32	110
MsaG004058	AT5G26749.2	35.542	166	69	3	1	128	1	166	1.87e-27	99.8

Find 44 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCACCTGGCATTCTTGTTAT+TGG	0.166998	1:+65261673	None:intergenic
TGCTGCTGCTGTTGTGTATT+GGG	0.205632	1:+65261697	None:intergenic
TACCGGCAGAGTGGCGTTTC+CGG	0.248184	1:+65261958	None:intergenic
AGAGTGGCGTTTCCGGTCTA+AGG	0.283984	1:+65261965	None:intergenic
TTGCTGCTGCTGTTGTGTAT+TGG	0.317673	1:+65261696	None:intergenic
GGAATAGAGTTCTGGTGTTC+GGG	0.348282	1:+65261891	None:intergenic
TGGAATAGAGTTCTGGTGTT+CGG	0.377509	1:+65261890	None:intergenic
ATCTATCCCCAGTCGACAAA+TGG	0.397656	1:+65261462	None:intergenic
ATGGTGGTGGAATAGAGTTC+TGG	0.430967	1:+65261883	None:intergenic
GGAATCGTACCAACGAGCTT+TGG	0.434321	1:+65261920	None:intergenic
CAACCTCCCATTTGTCGACT+GGG	0.457123	1:-65261469	MsaT004058.1:CDS
GTCACTGCAGCCTCCGCCTG+AGG	0.458331	1:-65261502	MsaT004058.1:CDS
TCACTGCAGCCTCCGCCTGA+GGG	0.463350	1:-65261501	MsaT004058.1:CDS
GTTCTGGTGTTCGGGTTTGA+AGG	0.464430	1:+65261899	None:intergenic
ACGCAGAAGGGTTGATTAGA+TGG	0.466779	1:+65261864	None:intergenic
GGCTTGTTTGTGTTGAATAC+CGG	0.496651	1:+65261941	None:intergenic
TCTATCCCCAGTCGACAAAT+GGG	0.506048	1:+65261463	None:intergenic
GATACCATGGGAGTGTCGTT+CGG	0.508317	1:-65261537	MsaT004058.1:CDS
GACCGGAAACGCCACTCTGC+CGG	0.512557	1:-65261960	MsaT004058.1:CDS
CCAACCTCCCATTTGTCGAC+TGG	0.514767	1:-65261470	MsaT004058.1:CDS
TCAGGCGGAGGCTGCAGTGA+CGG	0.518687	1:+65261504	None:intergenic
CTGCAGCCTCCGCCTGAGGG+TGG	0.519587	1:-65261498	MsaT004058.1:CDS
AAGGGTTGATTAGATGGTGG+TGG	0.521880	1:+65261870	None:intergenic
TTCAAGATACACCCTTAGAC+CGG	0.529755	1:-65261977	MsaT004058.1:CDS
GAGTATCCACCCTCAGGCGG+AGG	0.540027	1:+65261492	None:intergenic
AGGTTGGAGTATCCACCCTC+AGG	0.543831	1:+65261486	None:intergenic
ATATATGTAGGGAATATAGT+AGG	0.551592	1:-65261561	MsaT004058.1:intron
CCAGTCGACAAATGGGAGGT+TGG	0.561835	1:+65261470	None:intergenic
ATAGTACCGTGTTGACGAAG+TGG	0.572113	1:+65261841	None:intergenic
CAACCAATAACAAGAATGCC+AGG	0.578455	1:-65261676	MsaT004058.1:intron
GAGTGGCGTTTCCGGTCTAA+GGG	0.584406	1:+65261966	None:intergenic
TTGACGAAGTGGACGCAGAA+GGG	0.593699	1:+65261852	None:intergenic
GTTGACGAAGTGGACGCAGA+AGG	0.597332	1:+65261851	None:intergenic
GGCGGAGGCTGCAGTGACGG+AGG	0.613435	1:+65261507	None:intergenic
GAATATAGTAGGAGATACCA+TGG	0.619077	1:-65261550	MsaT004058.1:CDS
CTGCGTCCACTTCGTCAACA+CGG	0.619782	1:-65261847	MsaT004058.1:intron
ACAAACAAGCCAAAGCTCGT+TGG	0.650557	1:-65261929	MsaT004058.1:CDS
ATTGCCGAACGACACTCCCA+TGG	0.650589	1:+65261533	None:intergenic
CAGAAGGGTTGATTAGATGG+TGG	0.659317	1:+65261867	None:intergenic
TTGGAGTATCCACCCTCAGG+CGG	0.670531	1:+65261489	None:intergenic
ATCCCCAGTCGACAAATGGG+AGG	0.671698	1:+65261466	None:intergenic
AACCTCCCATTTGTCGACTG+GGG	0.672189	1:-65261468	MsaT004058.1:CDS
AATATAGTAGGAGATACCAT+GGG	0.697591	1:-65261549	MsaT004058.1:CDS
TGTGTTGAATACCGGCAGAG+TGG	0.711189	1:+65261949	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	65261464	65262042	65261464	ID=MsaG004058
Chr1	mRNA	65261464	65262042	65261464	ID=MsaT004058.1;Parent=MsaG004058
Chr1	exon	65261464	65261573	65261464	ID=MsaT004058.1.exon3;Parent=MsaT004058.1
Chr1	CDS	65261464	65261573	65261464	ID=cds.MsaT004058.1;Parent=MsaT004058.1
Chr1	exon	65261677	65261758	65261677	ID=MsaT004058.1.exon2;Parent=MsaT004058.1
Chr1	CDS	65261677	65261758	65261677	ID=cds.MsaT004058.1;Parent=MsaT004058.1
Chr1	exon	65261848	65262042	65261848	ID=MsaT004058.1.exon1;Parent=MsaT004058.1
Chr1	CDS	65261848	65262042	65261848	ID=cds.MsaT004058.1;Parent=MsaT004058.1

Gene Sequence

>MsaT004058.1

ATGCCAATGAAAAAGTACTATTGTGAGTATTGCGATAAGCAATTTCAAGATACACCCTTAGACCGGAAACGCCACTCTGCCGGTATTCAACACAAACAAGCCAAAGCTCGTTGGTACGATTCCTTCAAACCCGAACACCAGAACTCTATTCCACCACCATCTAATCAACCCTTCTGCGTCCACTTCGTCAACACGGGATTTTGTCGTTATGGCGATTCTTGCAAATATTTTCATCCCAATACACAACAGCAGCAGCAACCAATAACAAGAATGCCAGGGAATATAGTAGGAGATACCATGGGAGTGTCGTTCGGCAATTTGCCTCCGTCACTGCAGCCTCCGCCTGAGGGTGGATACTCCAACCTCCCATTTGTCGACTGGGGATAG

Protein sequence

>MsaT004058.1

MPMKKYYCEYCDKQFQDTPLDRKRHSAGIQHKQAKARWYDSFKPEHQNSIPPPSNQPFCVHFVNTGFCRYGDSCKYFHPNTQQQQQPITRMPGNIVGDTMGVSFGNLPPSLQPPPEGGYSNLPFVDWG*