AlfalfaGEDB | MsaG004095

M. sativa ssp. caerulea / MsaG004095

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010119 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004095	XP_003591261.1	98.103	369	5	2	1	367	1	369	0.0	741

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004095	sp\|Q8VZQ2\|MYB61_ARATH	47.433	409	130	11	1	367	1	366	8.48e-110	328

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004095	G7IAD1	98.103	369	5	2	1	367	1	369	0.0	741

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TFs/TRs:

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Gene ID	Type	Classification
MsaG004095	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004095	MtrunA17_Chr1g0193371	98.103	369	5	2	1	367	1	369	0.0	741
MsaG004095	MtrunA17_Chr7g0271241	57.214	402	115	20	1	367	1	380	2.23e-118	348
MsaG004095	MtrunA17_Chr7g0270891	47.938	388	159	9	1	366	1	367	1.79e-102	306
MsaG004095	MtrunA17_Chr1g0193801	50.372	403	144	17	1	364	1	386	2.16e-102	307
MsaG004095	MtrunA17_Chr4g0058631	71.951	164	44	1	1	162	1	164	1.28e-82	256
MsaG004095	MtrunA17_Chr1g0211161	60.194	206	69	4	3	204	4	200	5.08e-77	237
MsaG004095	MtrunA17_Chr3g0117091	82.946	129	22	0	1	129	1	129	7.79e-77	240
MsaG004095	MtrunA17_Chr2g0330041	72.180	133	37	0	1	133	1	133	3.31e-69	222
MsaG004095	MtrunA17_Chr8g0342521	76.423	123	29	0	1	123	1	123	2.06e-68	219
MsaG004095	MtrunA17_Chr8g0342541	75.610	123	30	0	1	123	1	123	7.62e-68	217

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004095	AT1G09540.1	47.433	409	130	11	1	367	1	366	8.62e-111	328
MsaG004095	AT1G57560.1	49.865	371	125	14	1	367	1	314	8.78e-99	296
MsaG004095	AT4G01680.1	46.832	363	141	8	1	343	1	331	5.00e-90	274
MsaG004095	AT1G57560.2	69.430	193	46	2	1	187	1	186	1.36e-89	271
MsaG004095	AT4G01680.3	81.290	155	28	1	1	154	1	155	2.65e-89	269
MsaG004095	AT5G26660.1	69.022	184	53	2	1	180	1	184	1.03e-87	269
MsaG004095	AT4G01680.2	45.333	375	141	9	1	343	1	343	1.15e-86	266
MsaG004095	AT3G12720.1	72.222	126	34	1	1	126	12	136	1.71e-68	218
MsaG004095	AT3G13890.2	79.310	116	24	0	1	116	1	116	2.54e-67	216
MsaG004095	AT3G61250.1	69.767	129	39	0	1	129	1	129	7.16e-65	208

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Find 66 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGTGGGAAGAGTTGC+AGG	0.345434	1:+65629963	MsaT004095.1:CDS
AAATTGAGGGTGATACAGAA+TGG	0.566456	1:-65630697	None:intergenic
AACATTAACAACACAAACAA+CGG	0.580018	1:+65630800	MsaT004095.1:CDS
AAGAAAAGATTGAGACAAAG+TGG	0.551516	1:+65630287	MsaT004095.1:CDS
ACATGTTAAGCCAACTGTTT+CGG	0.398547	1:+65630733	MsaT004095.1:CDS
ACTGAGGCTAAACCAGAAAC+AGG	0.484680	1:+65630911	MsaT004095.1:CDS
ACTGTTTCGGTTTCCTCGGA+CGG	0.541892	1:+65630746	MsaT004095.1:CDS
ACTTGAACTGCTACCAAACC+TGG	0.483346	1:-65630534	None:intergenic
ACTTTCTGATATATATAGCA+AGG	0.584658	1:+65630991	MsaT004095.1:CDS
AGAAGTTAAGGAAAGGACTT+TGG	0.475806	1:+65629752	MsaT004095.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	65629724	65631054	65629724	ID=MsaG004095
Chr1	mRNA	65629724	65631054	65629724	ID=MsaT004095.1;Parent=MsaG004095
Chr1	exon	65629724	65629856	65629724	ID=MsaT004095.1.exon1;Parent=MsaT004095.1
Chr1	CDS	65629724	65629856	65629724	ID=cds.MsaT004095.1;Parent=MsaT004095.1
Chr1	exon	65629957	65630086	65629957	ID=MsaT004095.1.exon2;Parent=MsaT004095.1
Chr1	CDS	65629957	65630086	65629957	ID=cds.MsaT004095.1;Parent=MsaT004095.1
Chr1	exon	65630214	65631054	65630214	ID=MsaT004095.1.exon3;Parent=MsaT004095.1
Chr1	CDS	65630214	65631054	65630214	ID=cds.MsaT004095.1;Parent=MsaT004095.1

Gene Sequence

>MsaT004095.1

ATGGGAAGACATTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGACTTTGGTCTCCAGAGGAAGATGAGAAACTTCTGAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCTGTCCCCAAACTAGCAGGTTTGCAAAGGTGTGGGAAGAGTTGCAGGTTAAGATGGATAAATTACTTGAGGCCTGATTTGAAAAGAGGAGCATTCTCACAACAAGAAGAGAATTTGATCATTGAACTTCATGCAGTACTTGGTAACAGATGGTCTCAGATTGCAGCACAATTACCAGGAAGAACTGACAATGAGATTAAAAATCTATGGAATTCATGTCTCAAGAAAAGATTGAGACAAAGTGGCATTGATCCAAACACTCACAAACCACTCTCTGAGGTTGAAAATGACAATGAAAAATCACTCACATCCAACAAAACCAATCAAAAAGCTTCAGTTTCATCCAATGAAGTTATGAGTTTGATGATTGAACCTACAAAAGCTTCTATAGAAGGATACCCTCTAGAAGTTTCTACTACCTCAAAGATCAACAATAGTAGCAGCAGCAGCCATGAATTATTCCTAGATACCAGGTTTGGTAGCAGTTCAAGTTATTTTTCTTTCCAGAACTTGAACTATGGATCAAACATAGGGATTTCTGAAAATCCAAATGCATCTATTTGTTTCACACCAACTTCAACTTCTTCACAAATTATGTCAGATACAAATTCTGTTATAACTTCCAATATGCTCCATTCTGTATCACCCTCAATTTTCTCAACTTCAACACATGTTAAGCCAACTGTTTCGGTTTCCTCGGACGGAGTTCATAACTGGGAAGCAAGTAACTACAACAACATTAACAACACAAACAACGGCGCTTTACCGTTACAAGAAGAAATGAAATGGTCTGAGTATCTTAACACACCATTTCTTATGCAGAATCAACCTTCCCCATCAATGTACACTGAGGCTAAACCAGAAACAGGTTTCATAACAGATGAATCATGCACTAGTTGGCAGCAGCAGCAACAACAAAATTTTCAACTTTCTGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACTATGTAG

Protein sequence

>MsaT004095.1

MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEVENDNEKSLTSNKTNQKASVSSNEVMSLMIEPTKASIEGYPLEVSTTSKINNSSSSSHELFLDTRFGSSSSYFSFQNLNYGSNIGISENPNASICFTPTSTSSQIMSDTNSVITSNMLHSVSPSIFSTSTHVKPTVSVSSDGVHNWEASNYNNINNTNNGALPLQEEMKWSEYLNTPFLMQNQPSPSMYTEAKPETGFITDESCTSWQQQQQQNFQLSDIYSKDLQRFSVAFGQTM*