AlfalfaGEDB | MsaG004117

M. sativa ssp. caerulea / MsaG004117

KEGG: K08065 K14799
GO: GO:0000976 GO:0000981 GO:0001067 GO:0001654 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0007423 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010720 GO:0010941 GO:0016070 GO:0016602 GO:0018130 GO:0019216 GO:0019218 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0022008 GO:0022603 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043408 GO:0043410 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0044877 GO:0045540 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045676 GO:0045678 GO:0045893 GO:0045935 GO:0045937 GO:0046483 GO:0046532 GO:0046534 GO:0046890 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048699 GO:0048731 GO:0048749 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050810 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0060548 GO:0062012 GO:0065007 GO:0070013 GO:0070491 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090181 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0106118 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1990823 GO:1990830 GO:1990837 GO:2000026 GO:2000027 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004117	AES91843.2	89.815	108	7	2	27	131	23	129	1.29e-62	197

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004117	sp\|O82248\|NFYB5_ARATH	72.277	101	24	2	21	118	46	145	3.84e-48	154

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004117	G7JKC3	89.815	108	7	2	27	131	23	129	6.16e-63	197

TFs/TRs:

Gene ID	Type	Classification
MsaG004117	TF	NF-YB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000309	MsaG004117	0.806988	1.068333e-49	1.697077e-47
MsaG000382	MsaG004117	0.854449	2.358006e-61	1.493775e-58
MsaG002973	MsaG004117	0.818330	3.616547e-52	7.613064e-50
MsaG004117	MsaG004301	0.819246	2.245032e-52	4.840519e-50
MsaG004117	MsaG005018	0.800439	2.408872e-48	3.289443e-46
MsaG004117	MsaG008881	0.804753	3.134967e-49	4.725693e-47
MsaG004117	MsaG009050	0.812239	8.051476e-51	1.452396e-48
MsaG004117	MsaG011153	0.822134	4.906879e-53	1.142033e-50
MsaG004117	MsaG012195	0.804543	3.466472e-49	5.200005e-47
MsaG004117	MsaG012893	0.823139	2.871420e-53	6.866566e-51
MsaG004117	MsaG013621	0.808844	4.323506e-50	7.180600e-48
MsaG004117	MsaG014185	0.806153	1.599890e-49	2.491849e-47
MsaG004117	MsaG014468	0.817747	4.891228e-52	1.014252e-49
MsaG004117	MsaG018270	0.846358	4.298448e-59	2.060196e-56
MsaG004117	MsaG019607	0.805706	1.984688e-49	3.058773e-47
MsaG004117	MsaG020487	0.834273	5.994710e-56	1.964763e-53
MsaG004117	MsaG027650	0.826916	3.719038e-54	9.865937e-52
MsaG004117	MsaG028758	0.872498	6.232175e-67	8.034743e-64
MsaG004117	MsaG028759	0.832337	1.810446e-55	5.605549e-53
MsaG004117	MsaG028804	0.817614	5.238613e-52	1.082578e-49
MsaG004117	MsaG029567	0.808204	5.914142e-50	9.671732e-48
MsaG004117	MsaG035935	0.800053	2.884210e-48	3.904341e-46
MsaG004117	MsaG037009	0.814470	2.618744e-51	4.995117e-49
MsaG004117	MsaG040429	0.825028	1.039484e-53	2.616887e-51
MsaG004117	MsaG040649	0.800900	1.942281e-48	2.679919e-46
MsaG004117	MsaG045072	0.802945	7.414776e-49	1.071872e-46
MsaG004117	MsaG045078	0.810098	2.333615e-50	3.994636e-48
MsaG004117	MsaG007366	0.820057	1.468929e-52	3.235680e-50
MsaG004117	MsaG031811	0.801563	1.422734e-48	1.992752e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004117	MtrunA17_Chr2g0296321	81.308	107	14	3	27	130	67	170	5.12e-55	172
MsaG004117	MtrunA17_Chr4g0067091	90.217	92	5	2	27	115	23	113	4.72e-54	169
MsaG004117	MtrunA17_Chr1g0195851	77.895	95	17	2	27	118	37	130	4.49e-50	158
MsaG004117	MtrunA17_Chr2g0290491	60.185	108	39	2	27	131	18	124	2.00e-41	135
MsaG004117	MtrunA17_Chr4g0076321	66.316	95	28	2	27	118	20	113	2.47e-41	134
MsaG004117	MtrunA17_Chr1g0191981	68.085	94	26	2	28	118	6	98	5.31e-41	132
MsaG004117	MtrunA17_Chr3g0102351	63.542	96	31	2	27	119	28	122	5.64e-40	132
MsaG004117	MtrunA17_Chr1g0185911	67.778	90	25	2	27	113	30	118	1.46e-39	130
MsaG004117	MtrunA17_Chr5g0446491	61.386	101	35	2	22	119	19	118	2.14e-39	130
MsaG004117	MtrunA17_Chr8g0382931	56.604	106	42	2	21	123	23	127	5.67e-39	130
MsaG004117	MtrunA17_Chr7g0263601	64.130	92	29	2	27	115	27	117	6.00e-39	129
MsaG004117	MtrunA17_Chr8g0384451	63.158	95	31	2	27	118	41	134	1.15e-38	129
MsaG004117	MtrunA17_Chr4g0076381	56.075	107	43	2	27	130	59	164	8.51e-37	125
MsaG004117	MtrunA17_Chr1g0165041	59.574	94	34	2	27	117	7	99	2.29e-33	115
MsaG004117	MtrunA17_Chr5g0446601	43.182	88	46	2	29	113	27	113	6.17e-18	75.9
MsaG004117	MtrunA17_Chr1g0159271	41.379	87	47	2	40	123	1	86	9.50e-16	67.8
MsaG004117	MtrunA17_Chr1g0158951	45.070	71	38	1	47	117	13	82	7.20e-15	65.9
MsaG004117	MtrunA17_Chr2g0307551	30.612	98	64	2	18	112	3	99	1.18e-13	63.9
MsaG004117	MtrunA17_Chr4g0062271	28.571	98	66	2	18	112	3	99	3.34e-12	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004117	AT2G47810.1	72.277	101	24	2	21	118	46	145	3.90e-49	154
MsaG004117	AT1G09030.1	69.792	96	25	2	27	119	4	98	2.64e-43	139
MsaG004117	AT5G47640.1	66.337	101	30	2	22	119	23	122	1.23e-41	136
MsaG004117	AT4G14540.1	62.745	102	34	2	24	122	19	119	2.84e-41	135
MsaG004117	AT3G53340.3	60.952	105	37	2	21	122	24	127	3.97e-41	134
MsaG004117	AT3G53340.2	60.952	105	37	2	21	122	24	127	3.97e-41	134
MsaG004117	AT3G53340.5	63.265	98	32	2	21	115	24	120	9.20e-40	131
MsaG004117	AT3G53340.1	63.265	98	32	2	21	115	24	120	9.20e-40	131
MsaG004117	AT2G38880.3	67.391	92	26	2	27	115	22	112	1.04e-39	130
MsaG004117	AT2G38880.2	67.391	92	26	2	27	115	22	112	1.35e-39	130
MsaG004117	AT2G38880.1	67.391	92	26	2	27	115	22	112	1.35e-39	130
MsaG004117	AT2G38880.5	67.391	92	26	2	27	115	22	112	1.35e-39	130
MsaG004117	AT3G53340.4	62.887	97	32	2	21	114	24	119	4.45e-39	128
MsaG004117	AT2G37060.2	62.245	98	33	2	21	115	25	121	1.03e-38	129
MsaG004117	AT2G37060.3	62.245	98	33	2	21	115	25	121	1.03e-38	129
MsaG004117	AT2G37060.1	62.245	98	33	2	21	115	25	121	1.03e-38	129
MsaG004117	AT2G38880.4	65.934	91	27	2	27	114	22	111	2.13e-38	126
MsaG004117	AT2G38880.7	66.667	90	26	2	27	113	22	110	3.62e-38	126
MsaG004117	AT2G13570.1	64.211	95	30	2	27	118	37	130	4.53e-38	128
MsaG004117	AT2G38880.9	65.934	91	27	2	27	114	22	111	7.02e-38	126
MsaG004117	AT2G38880.10	65.934	91	27	2	27	114	22	111	7.02e-38	126
MsaG004117	AT2G38880.6	65.934	91	27	2	27	114	22	111	7.02e-38	126
MsaG004117	AT2G38880.11	65.934	91	27	2	27	114	22	111	7.20e-38	126
MsaG004117	AT2G38880.8	65.934	91	27	2	27	114	22	111	7.20e-38	126
MsaG004117	AT5G47670.2	61.053	95	33	2	27	118	30	123	5.37e-36	122
MsaG004117	AT5G47670.1	61.053	95	33	2	27	118	59	152	1.12e-35	122
MsaG004117	AT5G47670.3	61.053	95	33	2	27	118	59	152	1.12e-35	122
MsaG004117	AT1G21970.1	53.684	95	40	2	27	118	60	153	9.25e-31	110
MsaG004117	AT5G23090.4	28.037	107	71	3	18	119	3	108	6.36e-12	59.7
MsaG004117	AT5G23090.5	28.155	103	68	3	18	115	3	104	8.60e-11	56.6
MsaG004117	AT5G23090.2	28.155	103	68	3	18	115	3	104	8.60e-11	56.6
MsaG004117	AT5G23090.1	28.155	103	68	3	18	115	3	104	8.60e-11	56.6

Find 26 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CACTCTTGCATTGTTTCCTT+TGG	0.194156	1:+65866489	None:intergenic
GCATAGATATAGAGAATTAG+AGG	0.332962	1:-65866316	MsaT004117.1:CDS
ACTCTTGCATTGTTTCCTTT+GGG	0.333372	1:+65866490	None:intergenic
CGATGATATATGTTGGGCTT+TGG	0.361762	1:-65866385	MsaT004117.1:CDS
GATGATATATGTTGGGCTTT+GGG	0.371039	1:-65866384	MsaT004117.1:CDS
TGAATATTATTAGTAGTAGT+TGG	0.374870	1:+65866282	None:intergenic
AACGTTGTTATCCATCGTTT+TGG	0.403126	1:+65866621	None:intergenic
ATCCTCCCAACATTTGCAAT+TGG	0.423560	1:+65866546	None:intergenic
TGTTGGGCTTTGGGGACACT+TGG	0.433132	1:-65866375	MsaT004117.1:CDS
TTGTTACCAATTGCAAATGT+TGG	0.438960	1:-65866552	MsaT004117.1:CDS
TGTTACCAATTGCAAATGTT+GGG	0.447901	1:-65866551	MsaT004117.1:CDS
TCCTTTAATAACGTTGAAAA+CGG	0.453836	1:-65866589	MsaT004117.1:CDS
ACTAATAATATTCAAAATAG+AGG	0.455896	1:-65866273	MsaT004117.1:CDS
GAAAGGAGAAAGACAGTGAA+TGG	0.488041	1:-65866411	MsaT004117.1:CDS
TGAAAACGGAGGCACAAGAT+AGG	0.505295	1:-65866575	MsaT004117.1:CDS
CAGAGAAATGCAGGAAGGAA+AGG	0.518431	1:-65866428	MsaT004117.1:CDS
ATGATATATGTTGGGCTTTG+GGG	0.541154	1:-65866383	MsaT004117.1:CDS
GTGACGCATCAGAGAAATGC+AGG	0.541912	1:-65866437	MsaT004117.1:CDS
TGGTGACGATGATATATGTT+GGG	0.557816	1:-65866391	MsaT004117.1:CDS
ACGATGGATAACAACGTTGG+AGG	0.595391	1:-65866616	MsaT004117.1:CDS
TTTAATAACGTTGAAAACGG+AGG	0.598517	1:-65866586	MsaT004117.1:CDS
TACCAATTGCAAATGTTGGG+AGG	0.600846	1:-65866548	MsaT004117.1:CDS
CGCATCAGAGAAATGCAGGA+AGG	0.623973	1:-65866433	MsaT004117.1:CDS
ATGGTGACGATGATATATGT+TGG	0.624511	1:-65866392	MsaT004117.1:CDS
AAAACGATGGATAACAACGT+TGG	0.647821	1:-65866619	MsaT004117.1:CDS
TAATAAAGGAACCAAAACGA+TGG	0.660654	1:-65866632	MsaT004117.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	65866266	65866736	65866266	ID=MsaG004117
Chr1	mRNA	65866266	65866736	65866266	ID=MsaT004117.1;Parent=MsaG004117
Chr1	exon	65866266	65866646	65866266	ID=MsaT004117.1.exon2;Parent=MsaT004117.1
Chr1	CDS	65866266	65866646	65866266	ID=cds.MsaT004117.1;Parent=MsaT004117.1
Chr1	exon	65866722	65866736	65866722	ID=MsaT004117.1.exon1;Parent=MsaT004117.1
Chr1	CDS	65866722	65866736	65866722	ID=cds.MsaT004117.1;Parent=MsaT004117.1

Gene Sequence

>MsaT004117.1

ATGAGACACGATGATGAACCAAAACGATGGATAACAACGTTGGAGGAAGTTCCTTTAATAACGTTGAAAACGGAGGCACAAGATAGGTTGTTACCAATTGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCCCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTTATAAGCTTTGTGACAAGTGACGCATCAGAGAAATGCAGGAAGGAAAGGAGAAAGACAGTGAATGGTGACGATGATATATGTTGGGCTTTGGGGACACTTGGTTTTGATGATTATGCTGAACAAATAAGAAAGTATTTGCATAGATATAGAGAATTAGAGGTAGAAAGAACACCAACTACTACTAATAATATTCAAAATAGAGGAAATTAA

Protein sequence

>MsaT004117.1

MRHDDEPKRWITTLEEVPLITLKTEAQDRLLPIANVGRIMKQILPQNAKIPKETMQECVSEFISFVTSDASEKCRKERRKTVNGDDDICWALGTLGFDDYAEQIRKYLHRYRELEVERTPTTTNNIQNRGN*