AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG004172

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004172 MtrunA17_Chr1g0194951 96.505 372 10 3 1 370 1 371 0.0 723
MsaG004172 MtrunA17_Chr7g0269831 46.457 381 165 10 1 368 1 355 2.13e-94 286
MsaG004172 MtrunA17_Chr4g0068061 60.894 179 56 3 1 174 1 170 3.48e-71 226
MsaG004172 MtrunA17_Chr7g0275911 68.852 122 38 0 1 122 1 122 8.71e-61 196
MsaG004172 MtrunA17_Chr8g0346561 68.966 116 36 0 1 116 1 116 3.67e-58 191
MsaG004172 MtrunA17_Chr4g0070641 65.323 124 43 0 1 124 1 124 1.32e-56 182
MsaG004172 MtrunA17_Chr1g0187761 64.662 133 44 1 1 130 1 133 1.48e-56 185
MsaG004172 MtrunA17_Chr4g0070611 65.323 124 43 0 1 124 1 124 2.38e-56 186
MsaG004172 MtrunA17_Chr3g0131121 69.492 118 36 0 1 118 1 118 2.73e-56 186
MsaG004172 MtrunA17_Chr3g0121241 65.600 125 38 1 5 129 35 154 2.94e-55 183
MsaG004172 MtrunA17_Chr7g0217741 61.481 135 52 0 1 135 1 135 4.69e-55 183
MsaG004172 MtrunA17_Chr1g0167661 68.103 116 37 0 1 116 1 116 6.18e-55 181
MsaG004172 MtrunA17_Chr1g0167691 66.379 116 39 0 1 116 1 116 2.16e-54 179
MsaG004172 MtrunA17_Chr4g0042671 63.566 129 47 0 1 129 1 129 2.45e-54 184
MsaG004172 MtrunA17_Chr1g0203411 66.379 116 39 0 1 116 1 116 3.44e-54 180
MsaG004172 MtrunA17_Chr7g0261281 66.379 116 39 0 1 116 1 116 4.61e-54 179
MsaG004172 MtrunA17_Chr7g0274581 62.931 116 43 0 1 116 1 116 6.20e-54 177
MsaG004172 MtrunA17_Chr4g0037141 67.241 116 38 0 1 116 1 116 6.73e-54 179
MsaG004172 MtrunA17_Chr3g0115821 61.240 129 50 0 1 129 1 129 6.75e-54 181
MsaG004172 MtrunA17_Chr2g0281071 63.077 130 47 1 1 129 1 130 1.03e-53 181
MsaG004172 MtrunA17_Chr6g0453471 62.016 129 49 0 1 129 1 129 1.47e-53 181
MsaG004172 MtrunA17_Chr4g0039971 60.769 130 51 0 1 130 2 131 1.59e-53 180
MsaG004172 MtrunA17_Chr3g0110351 67.241 116 38 0 1 116 1 116 3.45e-53 178
MsaG004172 MtrunA17_Chr2g0323411 59.231 130 53 0 1 130 1 130 5.20e-53 178
MsaG004172 MtrunA17_Chr8g0385321 63.281 128 47 0 1 128 1 128 6.26e-53 177
MsaG004172 MtrunA17_Chr5g0434571 62.500 128 48 0 1 128 37 164 6.27e-53 179
MsaG004172 MtrunA17_Chr7g0228891 68.103 116 37 0 1 116 1 116 1.25e-52 176
MsaG004172 MtrunA17_Chr4g0048511 61.832 131 49 1 1 130 1 131 2.03e-52 177
MsaG004172 MtrunA17_Chr8g0349261 62.308 130 47 2 1 128 1 130 4.18e-52 175
MsaG004172 MtrunA17_Chr3g0103281 57.042 142 47 1 1 128 1 142 4.24e-52 176
MsaG004172 MtrunA17_Chr4g0057031 59.375 128 52 0 1 128 1 128 2.25e-50 169
MsaG004172 MtrunA17_Chr4g0060721 63.793 116 42 0 1 116 2 117 5.58e-50 171
MsaG004172 MtrunA17_Chr5g0435101 60.684 117 46 0 3 119 2 118 3.09e-49 165
MsaG004172 MtrunA17_Chr7g0254411 60.504 119 47 0 1 119 1 119 9.76e-49 167
MsaG004172 MtrunA17_Chr5g0395281 57.364 129 55 0 1 129 1 129 2.97e-48 165
MsaG004172 MtrunA17_Chr2g0311221 65.455 110 38 0 2 111 4 113 4.02e-48 166
MsaG004172 MtrunA17_Chr5g0410961 55.814 129 57 0 1 129 1 129 1.04e-47 165
MsaG004172 MtrunA17_Chr2g0330041 56.204 137 59 1 1 137 1 136 1.98e-47 166
MsaG004172 MtrunA17_Chr3g0092401 60.345 116 46 0 1 116 2 117 2.09e-47 163
MsaG004172 MtrunA17_Chr7g0217221 60.345 116 46 0 1 116 1 116 4.54e-47 161
MsaG004172 MtrunA17_Chr8g0342541 59.398 133 45 1 1 124 1 133 6.31e-47 163
MsaG004172 MtrunA17_Chr8g0342521 62.097 124 47 0 1 124 1 124 7.17e-47 163
MsaG004172 MtrunA17_Chr1g0193371 63.793 116 42 0 1 116 1 116 4.13e-46 161
MsaG004172 MtrunA17_Chr2g0294811 75.000 92 23 0 1 92 1 92 4.57e-46 153
MsaG004172 MtrunA17_Chr4g0058631 60.156 128 51 0 1 128 1 128 5.40e-46 160
MsaG004172 MtrunA17_Chr3g0117091 57.895 133 56 0 1 133 1 133 1.03e-45 160
MsaG004172 MtrunA17_Chr8g0342481 51.316 152 71 2 1 151 1 150 1.05e-45 161
MsaG004172 MtrunA17_Chr1g0193801 62.931 116 43 0 1 116 1 116 1.61e-45 160
MsaG004172 MtrunA17_Chr7g0270891 62.931 116 43 0 1 116 1 116 2.35e-45 159
MsaG004172 MtrunA17_Chr2g0323351 59.483 116 47 0 1 116 1 116 4.88e-45 155
MsaG004172 MtrunA17_Chr1g0211161 58.594 128 53 0 3 130 4 131 6.87e-45 154
MsaG004172 MtrunA17_Chr7g0271241 66.055 109 37 0 1 109 1 109 2.31e-44 157
MsaG004172 MtrunA17_Chr6g0453211 59.459 111 45 0 1 111 1 111 2.73e-44 155
MsaG004172 MtrunA17_Chr8g0387421 59.483 116 47 0 1 116 1 116 2.78e-44 155
MsaG004172 MtrunA17_Chr4g0022891 59.821 112 45 0 1 112 1 112 6.79e-44 152
MsaG004172 MtrunA17_Chr2g0309911 53.676 136 55 2 6 138 5 135 6.85e-44 154
MsaG004172 MtrunA17_Chr5g0397231 60.909 110 43 0 1 110 1 110 1.20e-43 154
MsaG004172 MtrunA17_Chr1g0151941 54.622 119 53 1 1 118 1 119 2.69e-43 150
MsaG004172 MtrunA17_Chr4g0022881 57.025 121 48 1 1 121 1 117 2.93e-43 150
MsaG004172 MtrunA17_Chr4g0022901 56.897 116 49 1 1 115 1 116 3.03e-43 151
MsaG004172 MtrunA17_Chr4g0022931 55.556 117 51 1 1 116 1 117 3.10e-43 151
MsaG004172 MtrunA17_Chr4g0055981 62.500 104 39 0 12 115 55 158 3.28e-43 150
MsaG004172 MtrunA17_Chr4g0022911 55.172 116 51 1 1 115 1 116 4.10e-43 151
MsaG004172 MtrunA17_Chr8g0343831 60.952 105 41 0 12 116 8 112 4.97e-43 150
MsaG004172 MtrunA17_Chr5g0400821 55.556 117 51 1 1 116 1 117 7.60e-43 151
MsaG004172 MtrunA17_Chr4g0044421 55.906 127 50 2 3 128 2 123 1.17e-42 147
MsaG004172 MtrunA17_Chr6g0487491 53.676 136 53 3 1 126 1 136 1.27e-42 149
MsaG004172 MtrunA17_Chr6g0452271 51.562 128 62 0 1 128 1 128 5.13e-42 149
MsaG004172 MtrunA17_Chr3g0135311 54.237 118 53 1 1 117 1 118 9.59e-42 149
MsaG004172 MtrunA17_Chr4g0028311 56.410 117 50 1 1 116 1 117 1.61e-41 148
MsaG004172 MtrunA17_Chr1g0152011 54.701 117 52 1 1 116 1 117 2.15e-41 148
MsaG004172 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 2.40e-41 147
MsaG004172 MtrunA17_Chr7g0264641 51.538 130 61 2 1 129 1 129 3.35e-41 145
MsaG004172 MtrunA17_Chr2g0328771 58.120 117 48 1 12 128 20 135 4.05e-41 147
MsaG004172 MtrunA17_Chr3g0088461 60.185 108 43 0 9 116 19 126 1.16e-40 146
MsaG004172 MtrunA17_Chr4g0032401 59.633 109 44 0 12 120 17 125 2.09e-40 145
MsaG004172 MtrunA17_Chr1g0194291 58.879 107 44 0 9 115 18 124 3.32e-40 143
MsaG004172 MtrunA17_Chr7g0228231 60.000 105 42 0 12 116 14 118 3.57e-40 141
MsaG004172 MtrunA17_Chr4g0072751 54.955 111 49 1 1 110 1 111 4.07e-40 145
MsaG004172 MtrunA17_Chr2g0327351 56.757 111 47 1 1 110 1 111 6.37e-40 144
MsaG004172 MtrunA17_Chr6g0450101 55.932 118 50 1 1 116 1 118 8.47e-40 140
MsaG004172 MtrunA17_Chr1g0203441 57.265 117 49 1 1 116 1 117 1.88e-39 141
MsaG004172 MtrunA17_Chr1g0209661 59.615 104 42 0 12 115 27 130 1.89e-39 142
MsaG004172 MtrunA17_Chr7g0240821 46.575 146 76 1 17 160 6 151 1.94e-39 140
MsaG004172 MtrunA17_Chr1g0186061 59.223 103 42 0 13 115 21 123 2.17e-39 140
MsaG004172 MtrunA17_Chr1g0168661 59.223 103 42 0 13 115 22 124 8.47e-39 139
MsaG004172 MtrunA17_Chr8g0354661 57.547 106 45 0 10 115 35 140 8.52e-39 145
MsaG004172 MtrunA17_Chr5g0417821 52.500 120 57 0 10 129 5 124 2.48e-38 139
MsaG004172 MtrunA17_Chr3g0080861 39.691 194 100 4 10 190 35 224 8.82e-38 142
MsaG004172 MtrunA17_Chr6g0470971 57.798 109 46 0 7 115 9 117 1.68e-37 136
MsaG004172 MtrunA17_Chr7g0220341 36.453 203 112 4 10 197 23 223 1.71e-37 136
MsaG004172 MtrunA17_Chr4g0042611 65.909 88 30 0 1 88 1 88 8.70e-37 128
MsaG004172 MtrunA17_Chr3g0099131 56.604 106 46 0 10 115 39 144 1.58e-36 139
MsaG004172 MtrunA17_Chr1g0194301 55.769 104 46 0 12 115 33 136 2.19e-36 133
MsaG004172 MtrunA17_Chr5g0434911 50.893 112 55 0 7 118 16 127 1.38e-35 131
MsaG004172 MtrunA17_Chr2g0322521 55.140 107 48 0 9 115 26 132 1.57e-35 134
MsaG004172 MtrunA17_Chr1g0154031 56.731 104 45 0 12 115 76 179 2.57e-35 134
MsaG004172 MtrunA17_Chr5g0434931 51.852 108 52 0 11 118 34 141 2.81e-35 130
MsaG004172 MtrunA17_Chr4g0068921 58.252 103 43 0 12 114 24 126 7.51e-35 127
MsaG004172 MtrunA17_Chr5g0434831 53.774 106 49 0 11 116 6 111 1.16e-34 126
MsaG004172 MtrunA17_Chr1g0180391 47.692 130 60 1 12 133 19 148 5.79e-34 125
MsaG004172 MtrunA17_Chr7g0228991 34.872 195 116 3 11 194 28 222 1.52e-33 125
MsaG004172 MtrunA17_Chr2g0293911 55.140 107 48 0 8 114 20 126 1.95e-33 127
MsaG004172 MtrunA17_Chr8g0360111 52.427 103 49 0 11 113 24 126 3.21e-33 124
MsaG004172 MtrunA17_Chr1g0192411 54.000 100 46 0 10 109 10 109 2.30e-32 125
MsaG004172 MtrunA17_Chr5g0434841 50.000 106 53 0 11 116 19 124 9.11e-32 122
MsaG004172 MtrunA17_Chr5g0440781 37.222 180 90 7 13 190 13 171 1.16e-31 118
MsaG004172 MtrunA17_Chr4g0030881 49.091 110 49 1 13 115 8 117 3.07e-31 119
MsaG004172 MtrunA17_Chr8g0342511 62.069 87 33 0 1 87 1 87 3.61e-31 114
MsaG004172 MtrunA17_Chr5g0440761 46.218 119 60 3 13 128 13 130 3.71e-31 119
MsaG004172 MtrunA17_Chr5g0441141 46.218 119 60 3 13 128 13 130 5.52e-31 119
MsaG004172 MtrunA17_Chr7g0247131 55.208 96 43 0 44 139 10 105 6.51e-31 118
MsaG004172 MtrunA17_Chr8g0342531 47.200 125 61 1 1 120 1 125 7.64e-31 115
MsaG004172 MtrunA17_Chr2g0327821 49.038 104 53 0 12 115 6 109 1.02e-30 117
MsaG004172 MtrunA17_Chr2g0323321 57.609 92 38 1 1 92 1 91 9.04e-30 110
MsaG004172 MtrunA17_Chr5g0441131 48.039 102 52 1 10 110 7 108 2.56e-28 109
MsaG004172 MtrunA17_Chr8g0342461 56.667 90 38 1 1 89 1 90 4.49e-28 107
MsaG004172 MtrunA17_Chr8g0342471 56.667 90 38 1 1 89 1 90 5.82e-28 107
MsaG004172 MtrunA17_Chr5g0395221 55.682 88 39 0 1 88 1 88 6.80e-28 105
MsaG004172 MtrunA17_Chr3g0099141 55.422 83 37 0 12 94 40 122 2.72e-27 105
MsaG004172 MtrunA17_Chr8g0334881 46.154 104 55 1 12 114 10 113 1.14e-26 108
MsaG004172 MtrunA17_Chr4g0013361 45.370 108 58 1 8 114 6 113 1.59e-26 107
MsaG004172 MtrunA17_Chr3g0133601 49.020 102 51 1 14 115 37 137 9.06e-26 103
MsaG004172 MtrunA17_Chr4g0053431 48.113 106 54 1 14 119 5 109 7.38e-25 102
MsaG004172 MtrunA17_Chr5g0401731 45.455 110 51 2 14 119 15 119 1.09e-24 102
MsaG004172 MtrunA17_Chr4g0008551 48.544 103 50 2 14 115 38 138 7.25e-24 100
MsaG004172 MtrunA17_Chr6g0454921 43.396 106 59 1 14 119 15 119 1.97e-23 96.7
MsaG004172 MtrunA17_Chr6g0480581 41.441 111 58 2 14 118 4 113 3.07e-23 97.1
MsaG004172 MtrunA17_Chr5g0425591 48.235 85 43 1 10 93 7 91 7.86e-23 91.7
MsaG004172 MtrunA17_Chr7g0229101 59.420 69 28 0 44 112 4 72 1.24e-22 94.7
MsaG004172 MtrunA17_Chr3g0117511 36.420 162 90 4 8 159 177 335 2.09e-22 98.2
MsaG004172 MtrunA17_Chr5g0429661 46.667 105 53 2 12 115 120 222 1.70e-21 94.4
MsaG004172 MtrunA17_Chr7g0229131 48.193 83 43 0 45 127 5 87 2.83e-21 89.7
MsaG004172 MtrunA17_Chr5g0437321 45.455 99 53 1 14 112 19 116 3.31e-21 92.4
MsaG004172 MtrunA17_Chr4g0058991 42.857 112 60 3 8 118 203 311 5.06e-21 94.0
MsaG004172 MtrunA17_Chr4g0042501 43.689 103 55 2 14 115 105 205 1.59e-20 92.4
MsaG004172 MtrunA17_Chr3g0093811 50.000 84 39 1 36 116 3 86 2.99e-20 89.4
MsaG004172 MtrunA17_Chr5g0417621 42.308 104 57 2 14 116 134 235 3.82e-20 91.3
MsaG004172 MtrunA17_Chr6g0460661 38.235 102 62 1 14 115 16 116 4.20e-20 86.3
MsaG004172 MtrunA17_Chr5g0434901 55.385 65 29 0 48 112 9 73 4.42e-20 84.7
MsaG004172 MtrunA17_Chr7g0238631 39.844 128 66 3 12 135 111 231 5.53e-20 91.7
MsaG004172 MtrunA17_Chr3g0139671 38.889 108 65 1 12 119 83 189 1.12e-19 90.9
MsaG004172 MtrunA17_Chr3g0139671 36.538 104 64 2 14 116 33 135 3.90e-12 67.8
MsaG004172 MtrunA17_Chr1g0157731 37.037 108 67 1 12 119 89 195 2.35e-19 90.1
MsaG004172 MtrunA17_Chr1g0157731 35.577 104 65 2 14 116 39 141 3.10e-12 68.2
MsaG004172 MtrunA17_Chr3g0125801 41.818 110 61 2 14 122 16 123 5.17e-19 86.3
MsaG004172 MtrunA17_Chr6g0460671 41.176 102 59 1 14 115 99 199 1.06e-18 86.3
MsaG004172 MtrunA17_Chr6g0453751 44.565 92 42 2 11 93 19 110 1.57e-18 81.3
MsaG004172 MtrunA17_Chr7g0247141 68.750 48 14 1 1 47 1 48 2.45e-17 75.5
MsaG004172 MtrunA17_Chr7g0254261 39.806 103 59 2 14 115 89 189 4.59e-17 81.6
MsaG004172 MtrunA17_Chr5g0397841 42.857 98 55 1 12 109 108 204 1.03e-16 81.3
MsaG004172 MtrunA17_Chr7g0228531 38.679 106 63 2 10 115 216 319 1.53e-16 80.5
MsaG004172 MtrunA17_Chr7g0238651 37.113 97 59 1 14 108 7 103 4.16e-16 79.0
MsaG004172 MtrunA17_Chr1g0193901 46.429 84 43 2 12 93 11 94 3.70e-15 71.2
MsaG004172 MtrunA17_Chr1g0193891 46.429 84 43 2 12 93 11 94 3.70e-15 71.2
MsaG004172 MtrunA17_Chr1g0193871 46.429 84 43 2 12 93 11 94 3.70e-15 71.2
MsaG004172 MtrunA17_Chr1g0193881 46.429 84 43 2 12 93 11 94 3.70e-15 71.2
MsaG004172 MtrunA17_Chr7g0228481 38.614 101 60 2 10 110 216 314 4.22e-15 76.3
MsaG004172 MtrunA17_Chr1g0177901 42.529 87 49 1 24 110 4 89 6.80e-15 73.2
MsaG004172 MtrunA17_Chr7g0228401 50.794 63 31 0 48 110 312 374 2.28e-14 74.3
MsaG004172 MtrunA17_Chr7g0233061 35.922 103 51 3 14 110 180 273 3.61e-14 73.2
MsaG004172 MtrunA17_Chr5g0416341 36.170 94 59 1 17 110 29 121 2.42e-13 70.9
MsaG004172 MtrunA17_Chr5g0434871 55.556 45 20 0 74 118 2 46 1.06e-12 62.8
MsaG004172 MtrunA17_Chr2g0294821 45.679 81 39 2 89 169 5 80 6.28e-12 65.1
MsaG004172 MtrunA17_Chr8g0362231 34.043 94 61 1 17 110 25 117 1.36e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004172 AT2G47460.1 40.050 397 185 13 1 370 1 371 5.01e-74 234
MsaG004172 AT5G49330.1 65.680 169 41 1 1 152 1 169 2.77e-73 231
MsaG004172 AT3G62610.1 39.740 385 175 8 1 370 1 343 9.17e-66 212
MsaG004172 AT3G61250.1 63.281 128 47 0 1 128 1 128 3.09e-56 186
MsaG004172 AT1G35515.1 61.151 139 50 1 1 135 1 139 6.16e-56 182
MsaG004172 AT2G31180.1 68.103 116 37 0 1 116 1 116 8.09e-56 183
MsaG004172 AT4G28110.1 64.655 116 41 0 1 116 1 116 6.23e-55 182
MsaG004172 AT5G15310.4 62.016 129 49 0 1 129 1 129 7.34e-55 181
MsaG004172 AT4G21440.1 44.186 215 101 5 1 205 1 206 7.89e-55 184
MsaG004172 AT1G06180.1 66.667 117 39 0 1 117 1 117 8.90e-55 181
MsaG004172 AT4G38620.1 68.103 116 37 0 1 116 1 116 1.01e-54 182
MsaG004172 AT5G15310.1 62.016 129 49 0 1 129 1 129 1.66e-54 182
MsaG004172 AT2G16720.1 66.949 118 39 0 1 118 1 118 1.78e-54 181
MsaG004172 AT5G15310.2 62.016 129 49 0 1 129 1 129 1.81e-54 182
MsaG004172 AT3G23250.1 57.778 135 57 0 1 135 1 135 4.31e-54 180
MsaG004172 AT3G02940.2 60.465 129 51 0 1 129 1 129 7.10e-54 180
MsaG004172 AT4G09460.1 66.949 118 39 0 1 118 1 118 1.07e-53 177
MsaG004172 AT3G02940.1 60.465 129 51 0 1 129 1 129 1.21e-53 180
MsaG004172 AT3G02940.3 60.465 129 51 0 1 129 1 129 1.21e-53 180
MsaG004172 AT1G16490.1 66.667 117 39 0 2 118 4 120 1.57e-53 178
MsaG004172 AT5G16600.1 63.281 128 47 0 1 128 1 128 1.70e-53 180
MsaG004172 AT3G01140.2 66.379 116 39 0 1 116 1 116 2.55e-53 180
MsaG004172 AT3G13540.1 68.142 113 36 0 4 116 15 127 2.66e-53 177
MsaG004172 AT1G22640.1 64.407 118 42 0 1 118 1 118 3.32e-53 177
MsaG004172 AT5G16770.4 60.465 129 51 0 1 129 1 129 1.12e-52 177
MsaG004172 AT5G16770.3 60.465 129 51 0 1 129 1 129 1.12e-52 177
MsaG004172 AT4G34990.1 66.379 116 39 0 1 116 1 116 1.24e-52 176
MsaG004172 AT1G66230.1 61.719 128 49 0 1 128 1 128 1.51e-52 176
MsaG004172 AT4G05100.1 60.000 130 51 1 1 129 1 130 1.77e-52 177
MsaG004172 AT5G16770.1 60.465 129 51 0 1 129 1 129 1.88e-52 177
MsaG004172 AT5G16770.2 60.465 129 51 0 1 129 1 129 1.88e-52 177
MsaG004172 AT4G17785.2 58.824 136 55 1 1 135 1 136 6.05e-52 176
MsaG004172 AT4G17785.1 58.824 136 55 1 1 135 1 136 8.40e-52 176
MsaG004172 AT5G65230.1 58.647 133 55 0 1 133 1 133 1.10e-51 174
MsaG004172 AT1G79180.1 62.992 127 45 1 2 128 4 128 1.46e-51 174
MsaG004172 AT1G34670.1 60.465 129 51 0 1 129 1 129 1.76e-51 176
MsaG004172 AT5G14340.1 61.719 128 49 0 1 128 13 140 8.92e-51 171
MsaG004172 AT3G01140.1 65.487 113 39 0 4 116 47 159 3.30e-50 173
MsaG004172 AT4G22680.1 59.375 128 52 0 1 128 1 128 3.58e-50 169
MsaG004172 AT1G56160.1 65.217 115 40 0 2 116 4 118 1.12e-49 169
MsaG004172 AT3G12820.1 64.912 114 40 0 3 116 5 118 3.54e-49 166
MsaG004172 AT4G12350.1 58.594 128 53 0 1 128 1 128 4.14e-49 167
MsaG004172 AT5G62470.2 62.931 116 43 0 1 116 1 116 4.66e-49 169
MsaG004172 AT1G74650.1 62.069 116 44 0 1 116 1 116 7.46e-49 168
MsaG004172 AT5G60890.1 60.345 116 46 0 1 116 1 116 7.97e-49 167
MsaG004172 AT1G08810.1 61.207 116 45 0 1 116 1 116 1.05e-48 166
MsaG004172 AT5G10280.1 58.140 129 54 0 1 129 1 129 1.27e-48 167
MsaG004172 AT5G56110.1 58.594 128 53 0 1 128 1 128 1.78e-48 166
MsaG004172 AT1G74080.1 63.158 114 42 0 1 114 1 114 2.11e-48 167
MsaG004172 AT5G54230.1 43.902 205 109 2 1 205 1 199 2.26e-48 166
MsaG004172 AT5G07690.1 54.815 135 61 0 1 135 1 135 7.65e-48 165
MsaG004172 AT5G61420.2 60.345 116 46 0 1 116 1 116 9.99e-48 166
MsaG004172 AT5G62470.1 62.931 116 42 1 1 116 1 115 1.24e-47 165
MsaG004172 AT3G47600.1 60.345 116 46 0 1 116 1 116 2.69e-47 164
MsaG004172 AT3G13890.2 61.864 118 45 0 1 118 1 118 8.31e-47 163
MsaG004172 AT3G28910.1 61.207 116 45 0 1 116 1 116 1.39e-46 162
MsaG004172 AT1G18570.1 59.829 117 46 1 1 116 1 117 4.80e-46 161
MsaG004172 AT4G01680.3 63.793 116 42 0 1 116 1 116 5.57e-46 157
MsaG004172 AT5G26660.1 59.091 132 54 0 1 132 1 132 1.11e-45 160
MsaG004172 AT5G07700.1 58.621 116 48 0 1 116 1 116 1.26e-45 159
MsaG004172 AT5G07700.2 58.621 116 48 0 1 116 1 116 1.26e-45 159
MsaG004172 AT1G79180.2 52.027 148 38 1 2 116 4 151 2.36e-45 159
MsaG004172 AT4G01680.1 63.793 116 42 0 1 116 1 116 2.90e-45 159
MsaG004172 AT1G09540.1 63.793 116 42 0 1 116 1 116 3.79e-45 159
MsaG004172 AT1G63910.1 54.135 133 61 0 1 133 1 133 6.64e-45 159
MsaG004172 AT1G57560.1 62.069 116 44 0 1 116 1 116 1.37e-44 156
MsaG004172 AT1G57560.2 62.069 116 44 0 1 116 1 116 1.41e-44 155
MsaG004172 AT4G37780.1 56.303 119 51 1 1 118 1 119 6.76e-44 154
MsaG004172 AT5G35550.1 54.676 139 56 1 12 143 14 152 7.94e-44 152
MsaG004172 AT3G13890.1 57.480 127 45 1 1 118 1 127 8.97e-44 155
MsaG004172 AT3G12720.1 59.292 113 46 0 6 118 16 128 2.49e-43 152
MsaG004172 AT5G40330.1 41.011 178 97 3 13 185 13 187 8.16e-43 149
MsaG004172 AT3G08500.1 62.963 108 40 0 9 116 27 134 1.90e-42 151
MsaG004172 AT5G14750.1 58.654 104 43 0 13 116 17 120 4.04e-42 146
MsaG004172 AT5G12870.1 60.550 109 43 0 12 120 18 126 4.08e-42 149
MsaG004172 AT3G28470.1 58.182 110 46 0 1 110 1 110 4.13e-42 150
MsaG004172 AT3G49690.1 55.556 117 51 1 1 116 1 117 6.35e-42 149
MsaG004172 AT1G74430.1 54.688 128 58 0 1 128 1 128 7.13e-42 148
MsaG004172 AT4G01680.2 57.812 128 42 1 1 116 1 128 7.86e-42 150
MsaG004172 AT5G62320.1 52.239 134 52 2 2 128 3 131 2.04e-41 146
MsaG004172 AT5G23000.1 56.410 117 50 1 1 116 1 117 2.25e-41 148
MsaG004172 AT5G65790.1 54.701 117 52 1 1 116 1 117 4.76e-41 148
MsaG004172 AT2G36890.1 51.163 129 57 2 1 128 1 124 1.08e-40 145
MsaG004172 AT2G36890.2 51.163 129 57 2 1 128 42 165 1.96e-40 146
MsaG004172 AT1G18710.1 48.951 143 71 1 1 141 1 143 2.74e-40 144
MsaG004172 AT5G40350.1 57.018 114 49 0 12 125 17 130 5.04e-40 141
MsaG004172 AT5G52600.1 57.009 107 46 0 9 115 9 115 7.08e-40 140
MsaG004172 AT2G32460.1 56.250 112 49 0 4 115 10 121 9.87e-40 147
MsaG004172 AT5G57620.1 53.846 117 53 1 1 116 1 117 1.06e-39 144
MsaG004172 AT3G24310.1 59.259 108 44 0 11 118 17 124 1.31e-39 142
MsaG004172 AT4G13480.1 53.782 119 55 0 13 131 7 125 1.56e-39 141
MsaG004172 AT2G32460.2 58.095 105 44 0 11 115 5 109 2.67e-39 146
MsaG004172 AT3G27920.1 52.756 127 53 3 13 136 15 137 4.37e-39 139
MsaG004172 AT3G27810.1 59.048 105 43 0 12 116 20 124 9.42e-39 138
MsaG004172 AT1G48000.1 59.048 105 43 0 10 114 30 134 1.07e-38 139
MsaG004172 AT3G30210.1 56.757 111 48 0 11 121 26 136 1.30e-38 139
MsaG004172 AT5G55020.1 57.009 107 46 0 10 116 24 130 3.25e-38 144
MsaG004172 AT3G01530.1 58.095 105 44 0 12 116 25 129 5.88e-38 135
MsaG004172 AT1G68320.1 57.692 104 44 0 12 115 19 122 1.11e-37 137
MsaG004172 AT5G06100.1 55.238 105 47 0 11 115 31 135 3.22e-37 140
MsaG004172 AT1G66370.1 53.043 115 50 1 1 115 1 111 8.34e-37 134
MsaG004172 AT5G06100.5 55.238 105 47 0 11 115 31 135 1.11e-36 139
MsaG004172 AT5G06100.2 55.238 105 47 0 11 115 31 135 1.11e-36 139
MsaG004172 AT5G06100.3 55.238 105 47 0 11 115 31 135 1.11e-36 139
MsaG004172 AT5G06100.4 55.238 105 47 0 11 115 31 135 1.11e-36 139
MsaG004172 AT1G25340.1 55.340 103 46 0 13 115 19 121 1.73e-36 134
MsaG004172 AT4G25560.1 59.223 103 42 0 13 115 11 113 2.79e-36 133
MsaG004172 AT2G47190.1 51.923 104 50 0 12 115 20 123 4.19e-36 132
MsaG004172 AT3G11440.2 54.808 104 47 0 12 115 41 144 1.15e-35 135
MsaG004172 AT4G26930.1 54.286 105 48 0 10 114 17 121 1.85e-35 134
MsaG004172 AT1G56650.1 55.357 112 50 0 11 122 7 118 2.61e-35 130
MsaG004172 AT3G06490.1 58.879 107 44 0 8 114 15 121 3.50e-35 131
MsaG004172 AT3G11440.3 54.808 104 47 0 12 115 41 144 3.91e-35 135
MsaG004172 AT3G11440.4 54.808 104 47 0 12 115 41 144 3.91e-35 135
MsaG004172 AT3G11440.1 54.808 104 47 0 12 115 41 144 3.91e-35 135
MsaG004172 AT1G66380.1 56.190 105 46 0 11 115 7 111 1.15e-34 125
MsaG004172 AT5G52260.1 56.311 103 45 0 13 115 13 115 1.18e-33 126
MsaG004172 AT2G26960.1 50.943 106 52 0 9 114 17 122 3.00e-33 128
MsaG004172 AT1G66390.1 56.190 105 46 0 11 115 7 111 3.27e-33 124
MsaG004172 AT5G49620.1 57.009 107 46 0 8 114 22 128 6.45e-33 125
MsaG004172 AT3G53200.1 57.692 104 44 0 12 115 9 112 7.36e-33 123
MsaG004172 AT3G46130.1 51.429 105 51 0 11 115 8 112 1.07e-32 123
MsaG004172 AT5G59780.3 51.456 103 50 0 13 115 9 111 1.20e-32 122
MsaG004172 AT3G48920.1 50.962 104 51 0 13 116 19 122 3.04e-32 122
MsaG004172 AT1G25340.2 52.427 103 44 1 13 115 19 116 3.29e-32 122
MsaG004172 AT1G25340.3 52.427 103 44 1 13 115 19 116 5.06e-32 122
MsaG004172 AT3G12820.2 70.000 70 21 0 47 116 1 70 1.51e-30 115
MsaG004172 AT5G14750.3 63.636 77 25 1 40 116 13 86 3.80e-30 114
MsaG004172 AT5G35550.2 54.717 106 41 1 45 143 50 155 1.05e-29 115
MsaG004172 AT5G49620.2 50.413 121 46 1 8 114 22 142 2.46e-29 115
MsaG004172 AT5G26660.2 62.500 88 33 0 45 132 14 101 1.55e-28 114
MsaG004172 AT3G60460.1 46.789 109 57 1 7 114 6 114 6.97e-28 111
MsaG004172 AT5G40350.2 63.514 74 27 0 43 116 3 76 8.68e-28 107
MsaG004172 AT3G27810.2 62.500 72 27 0 45 116 4 75 1.48e-26 104
MsaG004172 AT2G26950.1 43.396 106 60 0 9 114 13 118 5.31e-26 107
MsaG004172 AT5G59780.2 61.972 71 27 0 45 115 20 90 2.97e-25 102
MsaG004172 AT3G46130.4 54.348 92 38 2 24 115 3 90 3.29e-25 102
MsaG004172 AT3G09230.1 45.536 112 52 2 14 121 55 161 4.54e-25 105
MsaG004172 AT3G46130.3 61.111 72 28 0 44 115 9 80 4.76e-25 102
MsaG004172 AT3G47600.2 61.111 72 28 0 45 116 39 110 1.33e-24 103
MsaG004172 AT3G53200.2 61.972 71 27 0 45 115 9 79 3.78e-24 99.0
MsaG004172 AT2G23290.1 48.039 102 52 1 14 115 13 113 1.10e-23 100
MsaG004172 AT1G69560.1 29.258 229 135 7 9 224 102 316 1.65e-23 100
MsaG004172 AT3G50060.1 41.270 126 73 1 14 139 6 130 1.79e-23 99.4
MsaG004172 AT3G55730.1 50.000 102 50 1 14 115 56 156 2.37e-23 100
MsaG004172 AT1G69560.2 29.258 229 135 7 9 224 118 332 2.44e-23 99.8
MsaG004172 AT2G39880.1 48.113 106 46 2 14 115 50 150 3.35e-23 99.8
MsaG004172 AT1G66380.3 59.722 72 29 0 44 115 7 78 6.16e-23 92.8
MsaG004172 AT4G37260.1 46.078 102 54 1 14 115 13 113 7.72e-23 98.2
MsaG004172 AT5G67300.1 46.078 102 54 1 14 115 6 106 4.57e-22 95.5
MsaG004172 AT3G27785.1 41.818 110 59 2 8 115 183 289 1.51e-21 95.9
MsaG004172 AT1G17950.1 40.367 109 64 1 14 122 5 112 2.15e-21 92.4
MsaG004172 AT1G22640.3 62.295 61 23 0 58 118 1 61 2.54e-21 91.3
MsaG004172 AT1G26780.2 27.542 236 141 8 12 234 96 314 3.15e-21 94.0
MsaG004172 AT4G18770.1 41.441 111 60 2 8 116 211 318 4.04e-21 94.7
MsaG004172 AT5G40360.1 36.923 130 79 3 1 129 145 272 4.74e-21 93.6
MsaG004172 AT1G26780.1 42.857 105 57 2 12 115 96 198 7.40e-21 91.7
MsaG004172 AT5G14750.4 59.322 59 24 0 58 116 1 59 1.73e-20 87.0
MsaG004172 AT5G14750.2 59.322 59 24 0 58 116 1 59 1.73e-20 87.0
MsaG004172 AT5G02320.1 42.202 109 54 2 12 116 125 228 1.93e-20 93.2
MsaG004172 AT5G02320.2 42.202 109 54 2 12 116 125 228 1.93e-20 93.2
MsaG004172 AT5G02320.3 42.202 109 54 2 12 116 65 168 2.31e-20 92.8
MsaG004172 AT1G66380.2 50.000 84 42 0 11 94 7 90 2.37e-20 85.9
MsaG004172 AT3G09370.2 43.519 108 52 2 12 115 133 235 3.42e-20 92.4
MsaG004172 AT3G09370.2 34.188 117 73 3 1 116 72 185 6.26e-11 64.3
MsaG004172 AT3G09370.1 43.519 108 52 2 12 115 128 230 3.62e-20 92.4
MsaG004172 AT3G09370.1 34.188 117 73 3 1 116 67 180 6.22e-11 64.3
MsaG004172 AT3G09370.3 43.519 108 52 2 12 115 141 243 4.22e-20 92.0
MsaG004172 AT3G09370.3 34.188 117 73 3 1 116 80 193 6.28e-11 64.3
MsaG004172 AT5G58850.1 44.762 105 55 2 12 115 103 205 6.55e-20 90.9
MsaG004172 AT1G18960.1 41.000 100 56 2 17 116 13 109 6.85e-20 89.4
MsaG004172 AT5G11510.5 36.434 129 77 2 12 138 79 204 7.04e-20 92.0
MsaG004172 AT5G11510.2 36.434 129 77 2 12 138 79 204 7.29e-20 91.7
MsaG004172 AT5G11510.3 36.434 129 77 2 12 138 79 204 7.83e-20 92.0
MsaG004172 AT5G11510.1 36.434 129 77 2 12 138 79 204 7.83e-20 92.0
MsaG004172 AT5G11510.4 36.434 129 77 2 12 138 79 204 7.83e-20 92.0
MsaG004172 AT3G29020.2 30.601 183 97 5 14 177 67 238 8.10e-20 89.4
MsaG004172 AT3G23250.2 59.322 59 24 0 58 116 1 59 1.69e-19 86.7
MsaG004172 AT1G73410.2 42.202 109 60 2 14 121 6 112 2.49e-19 85.9
MsaG004172 AT3G29020.1 39.806 103 61 1 14 116 65 166 2.51e-19 86.3
MsaG004172 AT5G11050.1 44.660 103 54 2 14 115 105 205 2.94e-19 89.0
MsaG004172 AT1G73410.1 42.202 109 60 2 14 121 6 112 2.99e-19 86.3
MsaG004172 AT1G71030.2 56.061 66 29 0 51 116 5 70 6.08e-19 84.0
MsaG004172 AT1G71030.1 50.633 79 38 1 38 116 7 84 7.00e-19 84.3
MsaG004172 AT5G17800.1 40.196 102 60 1 14 115 93 193 8.14e-19 86.7
MsaG004172 AT4G32730.1 37.037 108 67 1 12 119 85 191 8.70e-19 88.6
MsaG004172 AT4G32730.1 34.615 104 66 2 14 116 35 137 1.09e-11 67.0
MsaG004172 AT4G32730.5 37.037 108 67 1 12 119 85 191 8.74e-19 88.6
MsaG004172 AT4G32730.5 34.615 104 66 2 14 116 35 137 1.10e-11 67.0
MsaG004172 AT4G32730.4 37.037 108 67 1 12 119 85 191 8.74e-19 88.6
MsaG004172 AT4G32730.4 34.615 104 66 2 14 116 35 137 1.10e-11 67.0
MsaG004172 AT4G32730.3 37.037 108 67 1 12 119 85 191 8.74e-19 88.6
MsaG004172 AT4G32730.3 34.615 104 66 2 14 116 35 137 1.10e-11 67.0
MsaG004172 AT4G32730.2 37.037 108 67 1 12 119 85 191 8.74e-19 88.6
MsaG004172 AT4G32730.2 34.615 104 66 2 14 116 35 137 1.10e-11 67.0
MsaG004172 AT4G33450.1 33.544 158 92 5 3 153 13 164 1.16e-18 85.1
MsaG004172 AT5G39700.1 37.255 102 63 1 15 116 57 157 4.00e-16 76.3
MsaG004172 AT4G00540.2 37.838 111 65 2 12 119 101 210 7.74e-16 79.0
MsaG004172 AT2G25230.1 35.185 108 69 1 7 114 19 125 1.03e-15 76.3
MsaG004172 AT4G00540.1 37.838 111 65 2 12 119 99 208 1.13e-15 78.6
MsaG004172 AT2G37630.1 31.624 117 78 1 14 128 4 120 2.18e-15 77.0
MsaG004172 AT2G02820.3 37.234 94 58 1 17 110 33 125 2.77e-14 73.6
MsaG004172 AT4G25560.2 65.217 46 16 0 70 115 2 47 3.85e-14 71.2
MsaG004172 AT2G02820.2 37.234 94 58 1 17 110 33 125 5.59e-14 73.6
MsaG004172 AT2G02820.1 37.234 94 58 1 17 110 33 125 5.98e-14 73.2
MsaG004172 AT1G14350.2 36.170 94 59 1 17 110 28 120 4.07e-13 70.9
MsaG004172 AT1G14350.1 36.170 94 59 1 17 110 28 120 4.07e-13 70.9
MsaG004172 AT5G40430.1 32.407 108 71 2 7 114 47 152 7.53e-13 68.2
MsaG004172 AT5G59780.1 56.522 46 20 0 70 115 1 46 3.41e-12 64.7
MsaG004172 AT3G46130.2 56.522 46 20 0 70 115 1 46 1.00e-11 63.9

Find 80 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGAATGGTCTTTGAATA+TGG 0.209366 1:-66366939 MsaT004172.1:CDS
GTTTAGATTTGGATGATAAA+TGG 0.236357 1:-66366916 MsaT004172.1:CDS
GGAAGGTGATAGTAAGAGTT+TGG 0.236899 1:-66366798 MsaT004172.1:CDS
AGACAGTCTTAAATATAATT+TGG 0.237068 1:-66367017 MsaT004172.1:CDS
GGGAATTTGAAGGATTATTA+AGG 0.269142 1:-66371323 MsaT004172.1:intron
TTTGAATATGGGTTTAGATT+TGG 0.276771 1:-66366927 MsaT004172.1:CDS
GAATTATGTGACGACATCTT+AGG 0.277715 1:-66367220 MsaT004172.1:CDS
GTGTTGATGATAATAGTAAT+AGG 0.294687 1:-66366868 MsaT004172.1:CDS
GTTTGGTTCACACTACTTTC+GGG 0.297201 1:+66366980 None:intergenic
GGTTTGGTTCACACTACTTT+CGG 0.304715 1:+66366979 None:intergenic
CTACTCATACCTGCATTCTT+TGG 0.312993 1:+66371700 None:intergenic
GTACGTGGAATTTGAACTTC+TGG 0.344780 1:+66367331 None:intergenic
TCCACACTACTTATGGTAAC+AGG 0.346473 1:-66371203 MsaT004172.1:intron
ATTTCATTGTCCGTTCTTCC+TGG 0.346810 1:+66367547 None:intergenic
GACAATGGAAAATTGTTTGC+TGG 0.348197 1:-66367131 MsaT004172.1:CDS
AAGTCAATGGAGAAGGTTCT+TGG 0.351813 1:-66371732 MsaT004172.1:CDS
ATTTGGATGATAAATGGAAT+TGG 0.354111 1:-66366910 MsaT004172.1:CDS
AACAAAATGATTTGATTGCT+TGG 0.355944 1:-66366757 MsaT004172.1:CDS
TCCACTTTCACCGTTATTTG+AGG 0.382015 1:+66366958 None:intergenic
GTGAAGCTCCACACTACTTA+TGG 0.384648 1:-66371210 MsaT004172.1:CDS
TTTGGATGATAAATGGAATT+GGG 0.393935 1:-66366909 MsaT004172.1:CDS
AAGACTGTCTCCATCATCAT+TGG 0.394370 1:+66367030 None:intergenic
GGACGAACATCCATGATCTT+TGG 0.402215 1:+66367454 None:intergenic
TTTCACCGTTATTTGAGGTT+TGG 0.409041 1:+66366963 None:intergenic
GGAGAATGGTCTTTGAATAT+GGG 0.410310 1:-66366938 MsaT004172.1:CDS
TCAAAATACATTCAAGTCAA+TGG 0.412303 1:-66371745 MsaT004172.1:CDS
GTGAGAAAGTAGGGCTGAAA+AGG 0.422924 1:-66371801 MsaT004172.1:CDS
TAGGGCTGAAAAGGGGTAGA+TGG 0.426871 1:-66371792 MsaT004172.1:CDS
AAGTCAAGAGAGAGAAATGA+TGG 0.429496 1:-66367083 MsaT004172.1:CDS
TGGCAAGTGGCTAGCTATCA+TGG 0.430055 1:+66367567 None:intergenic
CTCCTTGTTGTGAGAAAGTA+GGG 0.452955 1:-66371810 MsaT004172.1:CDS
AATTATGTGACGACATCTTA+GGG 0.454312 1:-66367219 MsaT004172.1:CDS
GGTTGTGTGAAGATGATGAT+TGG 0.456468 1:-66366820 MsaT004172.1:CDS
GAAGGTGATAGTAAGAGTTT+GGG 0.457441 1:-66366797 MsaT004172.1:CDS
TGAGAAAGTAGGGCTGAAAA+GGG 0.462843 1:-66371800 MsaT004172.1:CDS
TGTTGATGATAATAGTAATA+GGG 0.462900 1:-66366867 MsaT004172.1:CDS
AACTATAGAGCCAAAGATCA+TGG 0.469285 1:-66367464 MsaT004172.1:CDS
GAAAGAACAACCAATGATGA+TGG 0.472679 1:-66367040 MsaT004172.1:CDS
ACCTCAAATAACGGTGAAAG+TGG 0.473918 1:-66366959 MsaT004172.1:CDS
GAGAGAGAAATGATGGGTGA+TGG 0.498146 1:-66367076 MsaT004172.1:CDS
ATGTGGTAAAACAAGTCGTT+GGG 0.503146 1:-66367419 MsaT004172.1:CDS
GTTGTGTGAAGATGATGATT+GGG 0.508074 1:-66366819 MsaT004172.1:CDS
TTGAAGGATTATTAAGGTGC+GGG 0.508154 1:-66371317 MsaT004172.1:intron
TTGAGAACTGACCTCAAAAG+AGG 0.515320 1:-66371264 MsaT004172.1:CDS
ATGATAGCTAGCCACTTGCC+AGG 0.516667 1:-66367565 MsaT004172.1:CDS
GGAAGAGTTGTAGACTAAGA+TGG 0.530001 1:-66371296 MsaT004172.1:CDS
GATCTTTGGCTCTATAGTTG+TGG 0.535260 1:+66367468 None:intergenic
TGCTGAGGTGAGAATTCCAA+TGG 0.535972 1:+66367518 None:intergenic
ACTCCTTGTTGTGAGAAAGT+AGG 0.539369 1:-66371811 MsaT004172.1:CDS
TTACCACATTTACGCTTAGG+AGG 0.541585 1:+66367433 None:intergenic
GTGAACCAAACCTCAAATAA+CGG 0.548903 1:-66366968 MsaT004172.1:CDS
AGGAAACATATCTGCTCAAG+AGG 0.548913 1:-66371244 MsaT004172.1:CDS
AATGTGGTAAAACAAGTCGT+TGG 0.554279 1:-66367420 MsaT004172.1:CDS
TACATTCAAGTCAATGGAGA+AGG 0.566462 1:-66371739 MsaT004172.1:CDS
ATGACATTAATGAAGACAGT+GGG 0.566755 1:-66367180 MsaT004172.1:CDS
AGAGAAATGATGGGTGATGG+AGG 0.569392 1:-66367073 MsaT004172.1:CDS
TGTCCGTTCTTCCTGGCAAG+TGG 0.570131 1:+66367554 None:intergenic
TAGCCACTTGCCAGGAAGAA+CGG 0.570228 1:-66367557 MsaT004172.1:CDS
ATGGAATTGGGAGAGTGTGA+TGG 0.574714 1:-66366897 MsaT004172.1:CDS
AATTGTTTGCTGGAAACAAG+TGG 0.575262 1:-66367121 MsaT004172.1:CDS
ATAACGGTGAAAGTGGAGAA+TGG 0.577565 1:-66366952 MsaT004172.1:CDS
AGGTCATTGCCAAAGAATGC+AGG 0.577934 1:-66371709 MsaT004172.1:intron
TTTGAAGGATTATTAAGGTG+CGG 0.594972 1:-66371318 MsaT004172.1:intron
AGTCAAGAGAGAGAAATGAT+GGG 0.595941 1:-66367082 MsaT004172.1:CDS
TTTGGTTCACACTACTTTCG+GGG 0.604186 1:+66366981 None:intergenic
CAATCTAGTGAAGGAGTACG+TGG 0.611516 1:+66367316 None:intergenic
AAGTACTCATGTCAAGACAA+TGG 0.614680 1:-66367146 MsaT004172.1:CDS
TCAATGGAGAAGGTTCTTGG+AGG 0.615802 1:-66371729 MsaT004172.1:CDS
AGCCCTACTTTCTCACAACA+AGG 0.617633 1:+66371808 None:intergenic
ATTGTTTGCTGGAAACAAGT+GGG 0.617843 1:-66367120 MsaT004172.1:CDS
CGTCCTCCTAAGCGTAAATG+TGG 0.619864 1:-66367436 MsaT004172.1:CDS
ACCTGTTACCATAAGTAGTG+TGG 0.624649 1:+66371202 None:intergenic
GAGAAAGTAGGGCTGAAAAG+GGG 0.627925 1:-66371799 MsaT004172.1:CDS
GAAAATAATTGATGACGTGG+AGG 0.627952 1:-66367278 MsaT004172.1:CDS
ACAACTTCACAATCTAGTGA+AGG 0.654135 1:+66367307 None:intergenic
AGAGAAAATAATTGATGACG+TGG 0.669316 1:-66367281 MsaT004172.1:CDS
GATGACATTAATGAAGACAG+TGG 0.688798 1:-66367181 MsaT004172.1:CDS
AGTAGTGTGGAGCTTCACAA+TGG 0.695094 1:+66371215 None:intergenic
TGTGAAGATGATGATTGGGA+AGG 0.699680 1:-66366815 MsaT004172.1:CDS
TGACATTAATGAAGACAGTG+GGG 0.734598 1:-66367179 MsaT004172.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 66366745 66371842 66366745 ID=MsaG004172
Chr1 mRNA 66366745 66371842 66366745 ID=MsaT004172.1;Parent=MsaG004172
Chr1 exon 66366745 66367594 66366745 ID=MsaT004172.1.exon3;Parent=MsaT004172.1
Chr1 CDS 66366745 66367594 66366745 ID=cds.MsaT004172.1;Parent=MsaT004172.1
Chr1 exon 66371204 66371333 66371204 ID=MsaT004172.1.exon2;Parent=MsaT004172.1
Chr1 CDS 66371204 66371333 66371204 ID=cds.MsaT004172.1;Parent=MsaT004172.1
Chr1 exon 66371710 66371842 66371710 ID=MsaT004172.1.exon1;Parent=MsaT004172.1
Chr1 CDS 66371710 66371842 66371710 ID=cds.MsaT004172.1;Parent=MsaT004172.1
Gene Sequence

>MsaT004172.1

ATGGGAAGAACTCCTTGTTGTGAGAAAGTAGGGCTGAAAAGGGGTAGATGGACAACAGAAGAAGATGAGATCTTGTCAAAATACATTCAAGTCAATGGAGAAGGTTCTTGGAGGTCATTGCCAAAGAATGCAGGATTATTAAGGTGCGGGAAGAGTTGTAGACTAAGATGGATTAACTATTTGAGAACTGACCTCAAAAGAGGAAACATATCTGCTCAAGAGGAAGACACCATTGTGAAGCTCCACACTACTTATGGTAACAGGTGGTCCATGATAGCTAGCCACTTGCCAGGAAGAACGGACAATGAAATTAAAAACCATTGGAATTCTCACCTCAGCAGAAAAATCTACAGTTTCTCAAAAATTTCCACAACTATAGAGCCAAAGATCATGGATGTTCGTCCTCCTAAGCGTAAATGTGGTAAAACAAGTCGTTGGGCCATGAAGAAGAACAAAAGCTACAAAAAACAAACCGTTATTAATACTAAAGAAAATTATATTGAACCAGAAGTTCAAATTCCACGTACTCCTTCACTAGATTGTGAAGTTGTTACAGAGAAAATAATTGATGACGTGGAGGTAAAAACAACACATGATGAGAAAGAAACAACGTATGAATTATGTGACGACATCTTAGGGCTGAGTGAGTTGTTAGATGACATTAATGAAGACAGTGGGGCATTGTGCATAAGTACTCATGTCAAGACAATGGAAAATTGTTTGCTGGAAACAAGTGGGTCTGTTTCAAATTTAAGTCAAGAGAGAGAAATGATGGGTGATGGAGGTGAAGAAAATGAAAGAACAACCAATGATGATGGAGACAGTCTTAAATATAATTTGGTTTCATGTGAAGACCCCGAAAGTAGTGTGAACCAAACCTCAAATAACGGTGAAAGTGGAGAATGGTCTTTGAATATGGGTTTAGATTTGGATGATAAATGGAATTGGGAGAGTGTGATGGAATTTAGTGTTGATGATAATAGTAATAGGGAGCATAAAGATAATCTTTTGAATTGGTTGTGTGAAGATGATGATTGGGAAGGTGATAGTAAGAGTTTGGGAGAGATAGATCCTCAGAAACAAAATGATTTGATTGCTTGGTTTCTCTCTTGA
Protein sequence

>MsaT004172.1

MGRTPCCEKVGLKRGRWTTEEDEILSKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISAQEEDTIVKLHTTYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYSFSKISTTIEPKIMDVRPPKRKCGKTSRWAMKKNKSYKKQTVINTKENYIEPEVQIPRTPSLDCEVVTEKIIDDVEVKTTHDEKETTYELCDDILGLSELLDDINEDSGALCISTHVKTMENCLLETSGSVSNLSQEREMMGDGGEENERTTNDDGDSLKYNLVSCEDPESSVNQTSNNGESGEWSLNMGLDLDDKWNWESVMEFSVDDNSNREHKDNLLNWLCEDDDWEGDSKSLGEIDPQKQNDLIAWFLS*