AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG004185


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004185 MtrunA17_Chr1g0194861 84.536 1261 115 11 1 1199 1 1243 0.0 2086
MsaG004185 MtrunA17_Chr1g0194861 83.654 104 17 0 1096 1199 1243 1346 3.67e-51 197
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004185 AT4G02110.2 67.982 228 72 1 862 1089 967 1193 5.92e-108 367
MsaG004185 AT4G02110.2 54.206 107 33 3 115 210 1 102 1.97e-23 108
MsaG004185 AT4G02110.1 67.982 228 72 1 862 1089 1096 1322 1.27e-106 366
MsaG004185 AT4G02110.1 52.423 227 78 5 9 210 10 231 2.89e-60 227

Find 269 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGAGTCTTTACCCTTAT+TGG 0.075467 1:-66505028 None:intergenic
GATTTCCTGGTCTTGATAAT+TGG 0.143495 1:+66506047 MsaT004185.1:CDS
ACTTGTGGACCAGTAGAATT+TGG 0.162831 1:-66504994 None:intergenic
TCCATCTATATCAGAATTTA+AGG 0.164801 1:+66506948 MsaT004185.1:CDS
AATTTCTCTGTCCTCCTTAT+AGG 0.170617 1:-66507123 None:intergenic
AAAATAAAACATGTGGTTTC+AGG 0.179171 1:-66506982 None:intergenic
GAAATCGAAAAGGCAGTATT+TGG 0.186715 1:+66506670 MsaT004185.1:CDS
TATACTCGCTTTCTTGATAC+TGG 0.214753 1:+66507850 MsaT004185.1:CDS
ATTTGTTAACATCAAGGATT+TGG 0.217175 1:-66506291 None:intergenic
AAAAGTCAATAAAAGTAAAA+AGG 0.225243 1:+66508792 MsaT004185.1:CDS
ACAGGTCATGGTGCCTTCTA+TGG 0.228805 1:+66507427 MsaT004185.1:CDS
TCTTGTGTAACTTAACTTCT+TGG 0.243171 1:-66505304 None:intergenic
GCCTCATCTCTTGTCTCATT+TGG 0.250185 1:-66506703 None:intergenic
TCATTCTTTGAATTCTTTCC+TGG 0.251009 1:-66506022 None:intergenic
TTCAACAGCCGCCACTTTCT+TGG 0.251038 1:-66507397 None:intergenic
GGTGTTCATTTCGCTCTCTT+TGG 0.264409 1:+66500614 MsaT004185.1:CDS
AGTCCCCTAGGTTCAAAATT+TGG 0.268181 1:+66504913 MsaT004185.1:CDS
TCCAAAGGCACCTGGCTTCC+AGG 0.273647 1:+66505212 MsaT004185.1:CDS
CAGACAGTGACATTTCTTTC+AGG 0.274545 1:-66506738 None:intergenic
TCCTTAGACTTGATATTTGC+TGG 0.278398 1:-66506913 None:intergenic
TAAAGATTTGGATGGAATTC+CGG 0.288570 1:+66502806 MsaT004185.1:CDS
ATTCGATTCAAGCTTGTTAA+TGG 0.292549 1:+66500758 MsaT004185.1:CDS
TTCTGCCTTACTTTGATGTT+TGG 0.298597 1:-66508539 None:intergenic
TGCTATTTCTTTGCTTCTGC+TGG 0.302908 1:-66506236 None:intergenic
CCTTGATGTTAACAAATTGA+TGG 0.316106 1:+66506297 MsaT004185.1:CDS
TATTCTAGGAAGAACCAAAA+AGG 0.316958 1:+66505387 MsaT004185.1:CDS
TTTGTTAACATCAAGGATTT+GGG 0.318611 1:-66506290 None:intergenic
GATTCCAAGCTGGGGCAATC+AGG 0.318812 1:+66504871 MsaT004185.1:CDS
CCAGGATCGGGATGACATTA+TGG 0.318910 1:+66502869 MsaT004185.1:CDS
TTCCAGGATATTGACATTAC+TGG 0.328872 1:+66505228 MsaT004185.1:CDS
TCTGTCCTCCTTATAGGATC+TGG 0.341349 1:-66507117 None:intergenic
TAATCTGCGTGATGACAATT+TGG 0.341472 1:+66505278 MsaT004185.1:CDS
GTATCAAGAAAGCGAGTATA+AGG 0.343349 1:-66507847 None:intergenic
AAACCATGCTCTTCATCATT+TGG 0.346087 1:-66506841 None:intergenic
TCTTTACCCTTATTGGCATT+TGG 0.346613 1:-66505021 None:intergenic
GAGGATTGCAGCAATCAATA+TGG 0.347386 1:-66508702 None:intergenic
GCCAGCAAATATCAAGTCTA+AGG 0.349651 1:+66506912 MsaT004185.1:CDS
TCCTGGAAGCCAGGTGCCTT+TGG 0.349876 1:-66505213 None:intergenic
GCCTTAAATTCTGATATAGA+TGG 0.350253 1:-66506949 None:intergenic
TCATAGCTCCAGATCCTATA+AGG 0.358776 1:+66507109 MsaT004185.1:CDS
TCTGCATGTGTTGAAGGTTC+TGG 0.362025 1:+66505510 MsaT004185.1:CDS
GATTCTGCATTTCCTGAGAT+AGG 0.362624 1:-66505836 None:intergenic
TGTACAGACCGCTAAAGATT+TGG 0.362660 1:+66502794 MsaT004185.1:intron
AAAGATTTGGATGGAATTCC+GGG 0.365255 1:+66502807 MsaT004185.1:CDS
ATTTCCTGGTCTTGATAATT+GGG 0.369870 1:+66506048 MsaT004185.1:CDS
CGAGGACGGTGCCATCAATA+TGG 0.373926 1:+66507369 MsaT004185.1:CDS
TCAAAGAATGAAGGATTTCC+TGG 0.374952 1:+66506034 MsaT004185.1:CDS
TCTTGGAGCCTCCATATTGA+TGG 0.375100 1:-66507380 None:intergenic
TTGCGCGGTGACTTTCTAAT+CGG 0.381507 1:-66506097 None:intergenic
GTTGAGTACGTCTGCAAGCC+GGG 0.382287 1:+66507973 MsaT004185.1:CDS
GATTTGGTTGTCTGCTTGAC+TGG 0.387720 1:+66502837 MsaT004185.1:CDS
TGTTAATTTCTTCAGCTTGA+AGG 0.393387 1:+66504096 MsaT004185.1:intron
TCAGCTGCCAAGAGAACTTT+GGG 0.395676 1:+66506124 MsaT004185.1:CDS
AATTCCGGGTGCAAAAGATT+TGG 0.397200 1:+66502821 MsaT004185.1:CDS
AAATCGACACGTGGCATGCC+AGG 0.401546 1:-66507895 None:intergenic
CTGATTTGTGGTGATGAAAC+TGG 0.403537 1:+66508655 MsaT004185.1:CDS
AAATCGAAAAGGCAGTATTT+GGG 0.404273 1:+66506671 MsaT004185.1:CDS
ATCACCGTTGGCTGGAAGAT+TGG 0.404581 1:+66503951 MsaT004185.1:CDS
TTCTCATCAGTGGTCATATC+AGG 0.407810 1:+66507077 MsaT004185.1:CDS
ATTTCTTCAGCTTGAAGGAT+TGG 0.411153 1:+66504101 MsaT004185.1:intron
ATTTGCAAAACTTCAAAGTA+AGG 0.412007 1:+66508049 MsaT004185.1:CDS
CTTAAGCGTGCGGTCAAAGC+TGG 0.412816 1:+66507796 MsaT004185.1:CDS
TTTCTTCAGCTTGAAGGATT+GGG 0.414914 1:+66504102 MsaT004185.1:intron
CTTGTGGACCAGTAGAATTT+GGG 0.418686 1:-66504993 None:intergenic
GGGATGCGCATTGTTGTATA+TGG 0.419008 1:+66507448 MsaT004185.1:CDS
CTTTATTGTGGCCAATCTCT+TGG 0.421271 1:-66503921 None:intergenic
AGCAAAGAAATAGCAACTTC+TGG 0.422190 1:+66506244 MsaT004185.1:CDS
TCTACTTCACATTTGTCATC+TGG 0.424117 1:-66506394 None:intergenic
CACTCTTCGCGAGTCTTTCG+CGG 0.424802 1:+66500593 MsaT004185.1:CDS
AACAATGCGCATCCCATAGA+AGG 0.432187 1:-66507440 None:intergenic
CATGTACGGCACTCATGCTT+TGG 0.434910 1:+66508016 MsaT004185.1:CDS
TGGCATGCCAGGGCTAACTA+TGG 0.435261 1:-66507884 None:intergenic
AATGGCTCCGGATGAAGAAT+TGG 0.436222 1:+66506423 MsaT004185.1:CDS
ACTGGAAATACAAATTCATC+TGG 0.437293 1:+66505246 MsaT004185.1:CDS
TTCAAGCTTGTTAATGGCGG+TGG 0.438677 1:+66500764 MsaT004185.1:CDS
GTCAGCTGCCAAGAGAACTT+TGG 0.438819 1:+66506123 MsaT004185.1:CDS
TTTCTTTCTGTTGACAAAGA+TGG 0.441291 1:+66505740 MsaT004185.1:CDS
TTTGAGGAGAGAAGAAATGT+TGG 0.441816 1:+66506862 MsaT004185.1:CDS
TCAGACAATGGTTGGCCTGA+TGG 0.442786 1:+66502985 MsaT004185.1:intron
CCCTTCCACCAAGGTAGAAA+AGG 0.443209 1:+66505470 MsaT004185.1:CDS
CCATCAATTTGTTAACATCA+AGG 0.444383 1:-66506297 None:intergenic
TGCCACTCATAAGGCTCCTC+TGG 0.446343 1:-66507331 None:intergenic
CAGCTATTCCCGAGGAGGAT+TGG 0.447918 1:+66508731 MsaT004185.1:CDS
TTCCCTCTTCAGACAATGGT+TGG 0.449094 1:+66502977 MsaT004185.1:intron
ATCAGCATTCTTAGACTCAA+TGG 0.450480 1:-66505187 None:intergenic
ATACTCGCTTTCTTGATACT+GGG 0.453049 1:+66507851 MsaT004185.1:CDS
GACAAATGTGAAGTAGAGTT+GGG 0.453783 1:+66506400 MsaT004185.1:CDS
CAGAAAACTGTGCACCCATC+AGG 0.456108 1:-66503000 None:intergenic
TTGAGGAGAGAAGAAATGTT+GGG 0.457765 1:+66506863 MsaT004185.1:CDS
GCATGCCACGTGTCGATTTG+TGG 0.463323 1:+66507899 MsaT004185.1:CDS
TCTTCTGCATACTCACTAAC+CGG 0.463631 1:-66506328 None:intergenic
CGCTAACTTCTTTGCAGCTG+TGG 0.465086 1:-66506648 None:intergenic
TCGGTGCTACGAGTTATTCT+AGG 0.468156 1:+66505373 MsaT004185.1:CDS
GCATTTGATAAGCCTATCTC+AGG 0.468199 1:+66505824 MsaT004185.1:CDS
CAGACAATGGTTGGCCTGAT+GGG 0.468396 1:+66502986 MsaT004185.1:intron
ATCAAATCTGCATGTGTTGA+AGG 0.468581 1:+66505504 MsaT004185.1:CDS
ATTCCAAGCTGGGGCAATCA+GGG 0.469861 1:+66504872 MsaT004185.1:CDS
TTGTGTTGTAGCGGACTACT+TGG 0.476668 1:+66507951 MsaT004185.1:CDS
CGATCATCTCACAGAAAACA+AGG 0.477136 1:+66500640 MsaT004185.1:CDS
CCATAATGTCATCCCGATCC+TGG 0.479361 1:-66502869 None:intergenic
CATGCCACGTGTCGATTTGT+GGG 0.481317 1:+66507900 MsaT004185.1:CDS
AGCTACATGAATCATATGTT+AGG 0.482525 1:+66505163 MsaT004185.1:CDS
CTGCATGTGTTGAAGGTTCT+GGG 0.482604 1:+66505511 MsaT004185.1:CDS
TGACAAATGTGAAGTAGAGT+TGG 0.483171 1:+66506399 MsaT004185.1:CDS
GGGCAAAACCAATCCTCCTC+GGG 0.485220 1:-66508739 None:intergenic
TTGATCTACTACCCTGGAAA+AGG 0.486609 1:-66505415 None:intergenic
GATGTTGGTGACTGCATTGT+GGG 0.486729 1:+66500970 MsaT004185.1:CDS
TTCCAGTAATGTCAATATCC+TGG 0.487192 1:-66505230 None:intergenic
TGGCTATCTACGCCAGGATC+GGG 0.488311 1:+66502857 MsaT004185.1:CDS
GAACCTGACAGCTTACCTTC+AGG 0.489934 1:-66505110 None:intergenic
ACTAGAGATGATGGCGGAAG+AGG 0.490099 1:+66504822 MsaT004185.1:CDS
GCTAGTTAATCACCGTTGGC+TGG 0.491106 1:+66503943 MsaT004185.1:CDS
AGATGAACCAATTCTTCATC+CGG 0.491955 1:-66506430 None:intergenic
CCGTACATGCGTGTCTCTCA+AGG 0.492042 1:-66508002 None:intergenic
TTTCCCGCGATCCACATACT+TGG 0.492525 1:-66508618 None:intergenic
GTACGAGCTTGCCAAGAGAT+TGG 0.493559 1:+66503910 MsaT004185.1:CDS
TCTAGAACCCAAAGTTCTCT+TGG 0.493789 1:-66506131 None:intergenic
AAATAACTTAAATACCTGCT+TGG 0.501492 1:+66505766 MsaT004185.1:CDS
GGTTGAGTACGTCTGCAAGC+CGG 0.501698 1:+66507972 MsaT004185.1:CDS
CAACCTGAAGGTAAGCTGTC+AGG 0.502452 1:+66505107 MsaT004185.1:CDS
TTTCTTAAGTGCCAGTAGCC+AGG 0.503878 1:+66507294 MsaT004185.1:CDS
AATGGCGGTGGAGTTGATGC+GGG 0.504030 1:+66500776 MsaT004185.1:CDS
GAAGGTTCTGGGAAAGAAAC+TGG 0.504396 1:+66505522 MsaT004185.1:CDS
CAAACCGAGGTAGCATCAAC+AGG 0.505536 1:-66501019 None:intergenic
TGGCCATCGCCTACAGAGAA+AGG 0.506713 1:+66507008 MsaT004185.1:CDS
GCACTCATGCTTTGGCAGAT+AGG 0.508633 1:+66508024 MsaT004185.1:CDS
GAGGCGGAAGATTCCAAGCT+GGG 0.509729 1:+66504862 MsaT004185.1:CDS
ATTTACCAAACATCAAAGTA+AGG 0.510575 1:+66508534 MsaT004185.1:CDS
AAAACTACTCAGCGAGATGA+AGG 0.510675 1:+66506202 MsaT004185.1:CDS
GATGAGCCACCTGTGTCTGA+TGG 0.510751 1:+66505716 MsaT004185.1:CDS
CAGGTCATGGTGCCTTCTAT+GGG 0.513908 1:+66507428 MsaT004185.1:CDS
TGATCAAGCGTTTGAAAGGA+AGG 0.513959 1:+66507043 MsaT004185.1:CDS
ATAATTCATTGCCTCAAAAG+AGG 0.515513 1:+66505568 MsaT004185.1:CDS
GGAGATTTGATGCTGATTTG+TGG 0.515683 1:+66508643 MsaT004185.1:CDS
GTTGATGCGGGGAAGAACAC+TGG 0.518035 1:+66500788 MsaT004185.1:CDS
TTAATCAAGTCTAAAGATAG+TGG 0.518083 1:+66505911 MsaT004185.1:CDS
GGCAGAAGAGATTATTGAGG+AGG 0.521403 1:+66508070 MsaT004185.1:CDS
GGAAAGAATTCAAAGAATGA+AGG 0.523294 1:+66506025 MsaT004185.1:CDS
TCAACTTCTACAAGTGCTGA+TGG 0.523391 1:+66505327 MsaT004185.1:CDS
GATGATGGCGGAAGAGGCTA+AGG 0.523468 1:+66504828 MsaT004185.1:CDS
CTGGCTATCTACGCCAGGAT+CGG 0.524351 1:+66502856 MsaT004185.1:CDS
TTTGGCACAGCTGTGACTCA+TGG 0.524555 1:+66504931 MsaT004185.1:CDS
CGTGCGGTCAAAGCTGGAGA+TGG 0.526398 1:+66507802 MsaT004185.1:CDS
ATCAAATGCCAATGTGTTGG+AGG 0.526782 1:-66505810 None:intergenic
GTGATTAACTAGCTTTATTG+TGG 0.528417 1:-66503933 None:intergenic
TTAAGTGCCAGTAGCCAGGC+AGG 0.529869 1:+66507298 MsaT004185.1:CDS
GGCTAAGGATTCTGAGGATG+AGG 0.530245 1:+66504843 MsaT004185.1:CDS
AATGAGACAAGAGATGAGGC+AGG 0.530559 1:+66506706 MsaT004185.1:CDS
AATTCCATCCAAATCTTTAG+CGG 0.532056 1:-66502802 None:intergenic
AAAGCCATCCCAAATTCTAC+TGG 0.533698 1:+66504985 MsaT004185.1:CDS
GTATGTGGATCGCGGGAAAG+AGG 0.535687 1:+66508622 MsaT004185.1:CDS
AAAGACTCTTCGATTACTAC+AGG 0.536651 1:+66505039 MsaT004185.1:CDS
GTAGAATGCAAAGAAACGTC+AGG 0.538051 1:-66505132 None:intergenic
CTTGACTGGCTATCTACGCC+AGG 0.538587 1:+66502851 MsaT004185.1:CDS
GGTTCCATTGGCTGTGGAGT+GGG 0.539135 1:+66508676 MsaT004185.1:CDS
GGTGATGAAACTGGTTCCAT+TGG 0.539624 1:+66508664 MsaT004185.1:CDS
TGGGCAAAACCAATCCTCCT+CGG 0.539703 1:-66508740 None:intergenic
GAAGTTAGAAGCAGTTGACC+AGG 0.539770 1:+66506483 MsaT004185.1:CDS
AGGATTGCAGCAATCAATAT+GGG 0.542741 1:-66508701 None:intergenic
CAGGTGATCAAGCGTTTGAA+AGG 0.545429 1:+66507039 MsaT004185.1:CDS
AGTAGAGTTGGGAATGGCTC+CGG 0.546272 1:+66506411 MsaT004185.1:CDS
TTCACATTGATCTACTACCC+TGG 0.547336 1:-66505421 None:intergenic
AGAAGTTAGCGAAATCGAAA+AGG 0.547368 1:+66506660 MsaT004185.1:CDS
TTCTAACTTCTCTTCTGCTG+AGG 0.549668 1:-66506470 None:intergenic
TAAGGCAGAAGAGATTATCA+AGG 0.551599 1:+66508552 MsaT004185.1:CDS
CCTTGAGAGACACGCATGTA+CGG 0.553406 1:+66508002 MsaT004185.1:CDS
TAAGGCAGAAGAGATTATTG+AGG 0.553441 1:+66508067 MsaT004185.1:CDS
ACAGAGAAAGGAGTTTCAGC+AGG 0.553933 1:+66507020 MsaT004185.1:CDS
CTTATCAAATGCCAATGTGT+TGG 0.554180 1:-66505813 None:intergenic
TTGGGTTCTAGACCCAGAAA+AGG 0.554581 1:+66506142 MsaT004185.1:CDS
ATGTCAATATCCTGGAAGCC+AGG 0.557352 1:-66505222 None:intergenic
GACTATGCCATAGTTAGCCC+TGG 0.558059 1:+66507877 MsaT004185.1:CDS
TCTGCCGCTGGTCGCAAACA+AGG 0.559021 1:+66503019 MsaT004185.1:CDS
AAATTGTCATCACGCAGATT+AGG 0.560313 1:-66505276 None:intergenic
GGTACCCACTCCACAGCCAA+TGG 0.560665 1:-66508680 None:intergenic
GGGTGCATTGTCTTCATCAA+AGG 0.560961 1:+66508813 MsaT004185.1:CDS
TTGCCAAGTATGTGGATCGC+GGG 0.563072 1:+66508615 MsaT004185.1:CDS
GCTGAAACTCCTTTCTCTGT+AGG 0.564808 1:-66507017 None:intergenic
TAATGGCGGTGGAGTTGATG+CGG 0.564836 1:+66500775 MsaT004185.1:CDS
AGAAACTGGTGTTATTCAAG+AGG 0.565350 1:+66505536 MsaT004185.1:CDS
CAAGGAGGTCATTCCTCATG+AGG 0.570635 1:+66508570 MsaT004185.1:CDS
TGAGGCGGAAGATTCCAAGC+TGG 0.572135 1:+66504861 MsaT004185.1:CDS
ACTATAAGCAAAAGTCCCCT+AGG 0.576594 1:+66504901 MsaT004185.1:CDS
AATAGCAACTTCTGGTGTGA+AGG 0.576721 1:+66506252 MsaT004185.1:CDS
CATCTTGAGTGTTCATCACC+AGG 0.578167 1:+66506004 MsaT004185.1:CDS
GCCACTTAAAATAAAACATG+TGG 0.579555 1:-66506989 None:intergenic
CTGAAAACAAATATAACAAG+AGG 0.579867 1:+66504134 MsaT004185.1:CDS
TAAAGCTAGTTAATCACCGT+TGG 0.584487 1:+66503939 MsaT004185.1:CDS
GAAACTGGTTCCATTGGCTG+TGG 0.584504 1:+66508670 MsaT004185.1:CDS
CGGCTGTTGAAAGAAAGAAC+AGG 0.584901 1:+66507409 MsaT004185.1:CDS
AGTGAGTATGCAGAAGATGC+TGG 0.586456 1:+66506334 MsaT004185.1:CDS
AATGCCTGTTGATGCTACCT+CGG 0.587295 1:+66501015 MsaT004185.1:CDS
TTACCTTCCTGATGCAGTAG+CGG 0.587895 1:-66507151 None:intergenic
TCCAAGCTGGGGCAATCAGG+GGG 0.590436 1:+66504874 MsaT004185.1:CDS
GAGTTCTCACTTATATCAGA+AGG 0.591107 1:-66506763 None:intergenic
CGATTCAAGCTTGTTAATGG+CGG 0.592256 1:+66500761 MsaT004185.1:CDS
ACTCCTTTCTCTGTAGGCGA+TGG 0.592552 1:-66507011 None:intergenic
GCTCAAGGGACAGACTCACT+TGG 0.593309 1:-66508836 None:intergenic
TTGAAAGAAAGAACAGGTCA+TGG 0.594190 1:+66507415 MsaT004185.1:CDS
TACTCGCTTTCTTGATACTG+GGG 0.595273 1:+66507852 MsaT004185.1:CDS
ATATGGAGGCTCCAAGAAAG+TGG 0.595831 1:+66507386 MsaT004185.1:CDS
CAGACCGCTAAAGATTTGGA+TGG 0.596272 1:+66502798 MsaT004185.1:intron
AGCTTCTGCCTCCAACACAT+TGG 0.597432 1:+66505802 MsaT004185.1:CDS
GATGTAGCTTGCCAAGTATG+TGG 0.597538 1:+66508607 MsaT004185.1:CDS
TTCCAAGCTGGGGCAATCAG+GGG 0.599814 1:+66504873 MsaT004185.1:CDS
AGATGTTGGTGACTGCATTG+TGG 0.600644 1:+66500969 MsaT004185.1:CDS
GTCAAAATCTCTAAGAGAGG+AGG 0.602945 1:+66504957 MsaT004185.1:CDS
TGGACCAGTAGAATTTGGGA+TGG 0.603738 1:-66504989 None:intergenic
TAGTGGTGAGCCTGATGCAA+CGG 0.604279 1:+66505928 MsaT004185.1:CDS
CAAGGTAGAAAAGGCAAGTG+AGG 0.606134 1:+66505479 MsaT004185.1:CDS
GATCAAGCGTTTGAAAGGAA+GGG 0.612539 1:+66507044 MsaT004185.1:CDS
TGCGGATTTAGAAACCAAGC+AGG 0.612594 1:-66505780 None:intergenic
GTTGAACATAGTGCTGATGT+TGG 0.612914 1:+66500992 MsaT004185.1:CDS
AAATCCCAATTATCAAGACC+AGG 0.613763 1:-66506052 None:intergenic
TTGGCAGCTGACTTCTTGCG+CGG 0.614710 1:-66506112 None:intergenic
ATGTGAAGTAGAGTTGGGAA+TGG 0.617643 1:+66506405 MsaT004185.1:CDS
AATCGACACGTGGCATGCCA+GGG 0.619056 1:-66507894 None:intergenic
TGTGTTGGAGGCAGAAGCTG+CGG 0.620092 1:-66505798 None:intergenic
TTGAGTACGTCTGCAAGCCG+GGG 0.621599 1:+66507974 MsaT004185.1:CDS
GGTGGCTCATCAACCACAGA+TGG 0.622968 1:-66505704 None:intergenic
GAGGTTGAGTCTAACTCTGA+AGG 0.625975 1:-66506571 None:intergenic
TCATCATTGCAACCCTCATG+AGG 0.626300 1:-66508583 None:intergenic
GTAACCTTGTTTGCGACCAG+CGG 0.626670 1:-66503023 None:intergenic
AAGGAGGTCATTCCTCATGA+GGG 0.627795 1:+66508571 MsaT004185.1:CDS
AGACCAAATGATGAAGAGCA+TGG 0.627980 1:+66506838 MsaT004185.1:CDS
CGTACATGCGTGTCTCTCAA+GGG 0.628410 1:-66508001 None:intergenic
TGGTTCCATTGGCTGTGGAG+TGG 0.628638 1:+66508675 MsaT004185.1:CDS
GCATAATATTAGCAACCTGA+AGG 0.628689 1:+66505095 MsaT004185.1:CDS
AAGTAGTCCGCTACAACACA+AGG 0.628899 1:-66507949 None:intergenic
TCAAGAAAGCGAGTATAAGG+AGG 0.629991 1:-66507844 None:intergenic
TCCAAATGAGACAAGAGATG+AGG 0.630653 1:+66506702 MsaT004185.1:CDS
TTGCCGCTACTGCATCAGGA+AGG 0.631958 1:+66507148 MsaT004185.1:CDS
ATACAAATTCATCTGGTCTG+TGG 0.632592 1:+66505253 MsaT004185.1:CDS
TTGTTAACATCAAGGATTTG+GGG 0.635516 1:-66506289 None:intergenic
TTCAGAGTTAGACTCAACCT+CGG 0.636881 1:+66506573 MsaT004185.1:CDS
GCACATTCAGATGAAAAGCT+CGG 0.636983 1:+66505354 MsaT004185.1:CDS
ATCGTCAAAATCTCTAAGAG+AGG 0.640134 1:+66504954 MsaT004185.1:CDS
GGAAGAGGCTAAGGATTCTG+AGG 0.640663 1:+66504837 MsaT004185.1:CDS
TCCTCGGGAATAGCTGTCAG+CGG 0.641403 1:-66508724 None:intergenic
TTTGCCGTGATTCTCATCAG+TGG 0.642588 1:+66507067 MsaT004185.1:CDS
CTTGCCAAGTATGTGGATCG+CGG 0.642622 1:+66508614 MsaT004185.1:CDS
AATCGAAAAGGCAGTATTTG+GGG 0.644225 1:+66506672 MsaT004185.1:CDS
GGCAGGAAAATTATTGCCAG+AGG 0.644253 1:+66507315 MsaT004185.1:CDS
ATGAGACAAGAGATGAGGCA+GGG 0.645233 1:+66506707 MsaT004185.1:CDS
GAAAGAAAGCCATCAGACAC+AGG 0.645551 1:-66505725 None:intergenic
ACAGGATACTCTTAAGCGTG+CGG 0.647401 1:+66507786 MsaT004185.1:intron
GAGAGAGGATGGAAAGATGT+TGG 0.648494 1:+66500955 MsaT004185.1:intron
TGAGATACCTTGTGTTGTAG+CGG 0.650742 1:+66507942 MsaT004185.1:CDS
TAAGGATTCTGAGGATGAGG+CGG 0.653839 1:+66504846 MsaT004185.1:CDS
TCCGCTGACAGCTATTCCCG+AGG 0.660558 1:+66508723 MsaT004185.1:CDS
GATCAATGTGAAGACAGAGA+AGG 0.661317 1:+66505432 MsaT004185.1:CDS
GGCAGAAGAGATTATCAAGG+AGG 0.663325 1:+66508555 MsaT004185.1:CDS
TCGGGAATAGCTGTCAGCGG+AGG 0.663496 1:-66508721 None:intergenic
ATGACCACTGATGAGAATCA+CGG 0.663566 1:-66507071 None:intergenic
GGACGGTGCCATCAATATGG+AGG 0.665513 1:+66507372 MsaT004185.1:CDS
AGGCGGAAGATTCCAAGCTG+GGG 0.675147 1:+66504863 MsaT004185.1:CDS
AGGATCGAAAGTGCCATCTG+TGG 0.676967 1:+66505691 MsaT004185.1:intron
ATGGCGGTGGAGTTGATGCG+GGG 0.679578 1:+66500777 MsaT004185.1:CDS
TGGAGGCTCCAAGAAAGTGG+CGG 0.683408 1:+66507389 MsaT004185.1:CDS
TGCCAGAGGAGCCTTATGAG+TGG 0.683644 1:+66507329 MsaT004185.1:CDS
TAGCTCCAGATCCTATAAGG+AGG 0.687705 1:+66507112 MsaT004185.1:CDS
CATACCAATCTTCCAGCCAA+CGG 0.689524 1:-66503955 None:intergenic
TCTTGAAACCCCTTCCACCA+AGG 0.691814 1:+66505461 MsaT004185.1:CDS
AGAAAGCCATCAGACACAGG+TGG 0.698252 1:-66505722 None:intergenic
GCTGACAGCTATTCCCGAGG+AGG 0.706393 1:+66508726 MsaT004185.1:CDS
TGGACCCACAAATCGACACG+TGG 0.713655 1:-66507904 None:intergenic
TGTCTCTCAAGGGAGAACCC+CGG 0.723873 1:-66507991 None:intergenic
TGATGAACACTCAAGATGTG+TGG 0.746588 1:-66505999 None:intergenic
GAGTATGCAGAAGATGCTGG+TGG 0.768912 1:+66506337 MsaT004185.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 66500578 66508843 66500578 ID=MsaG004185
Chr1 mRNA 66500578 66508843 66500578 ID=MsaT004185.1;Parent=MsaG004185
Chr1 exon 66500578 66500661 66500578 ID=MsaT004185.1.exon1;Parent=MsaT004185.1
Chr1 CDS 66500578 66500661 66500578 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66500758 66500847 66500758 ID=MsaT004185.1.exon2;Parent=MsaT004185.1
Chr1 CDS 66500758 66500847 66500758 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66500962 66501036 66500962 ID=MsaT004185.1.exon3;Parent=MsaT004185.1
Chr1 CDS 66500962 66501036 66500962 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66502801 66502890 66502801 ID=MsaT004185.1.exon4;Parent=MsaT004185.1
Chr1 CDS 66502801 66502890 66502801 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66502989 66503040 66502989 ID=MsaT004185.1.exon5;Parent=MsaT004185.1
Chr1 CDS 66502989 66503040 66502989 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66503903 66503972 66503903 ID=MsaT004185.1.exon6;Parent=MsaT004185.1
Chr1 CDS 66503903 66503972 66503903 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66504111 66504155 66504111 ID=MsaT004185.1.exon7;Parent=MsaT004185.1
Chr1 CDS 66504111 66504155 66504111 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66504813 66505639 66504813 ID=MsaT004185.1.exon8;Parent=MsaT004185.1
Chr1 CDS 66504813 66505639 66504813 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66505693 66506601 66505693 ID=MsaT004185.1.exon9;Parent=MsaT004185.1
Chr1 CDS 66505693 66506601 66505693 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66506644 66507169 66506644 ID=MsaT004185.1.exon10;Parent=MsaT004185.1
Chr1 CDS 66506644 66507169 66506644 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66507276 66507492 66507276 ID=MsaT004185.1.exon11;Parent=MsaT004185.1
Chr1 CDS 66507276 66507492 66507276 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66507790 66508091 66507790 ID=MsaT004185.1.exon12;Parent=MsaT004185.1
Chr1 CDS 66507790 66508091 66507790 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Chr1 exon 66508531 66508843 66508531 ID=MsaT004185.1.exon13;Parent=MsaT004185.1
Chr1 CDS 66508531 66508843 66508531 ID=cds.MsaT004185.1;Parent=MsaT004185.1
Gene Sequence

>MsaT004185.1

ATGCTCGAAACGAGTCACTCTTCGCGAGTCTTTCGCGGTGTTCATTTCGCTCTCTTTGGTTTCGATCATCTCACAGAAAACAAGATTCGATTCAAGCTTGTTAATGGCGGTGGAGTTGATGCGGGGAAGAACACTGGAAATTGCACGCATGTTATTGTTGATAAAATTGCTTATGATGGAAAGATGTTGGTGACTGCATTGTGGGTTGAACATAGTGCTGATGTTGGAATGCCTGTTGATGCTACCTCGACCGCTAAAGATTTGGATGGAATTCCGGGTGCAAAAGATTTGGTTGTCTGCTTGACTGGCTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAGTTTTCTGCCGCTGGTCGCAAACAAGGGGAGAAGTACGAGCTTGCCAAGAGATTGGCCACAATAAAGCTAGTTAATCACCGTTGGCTGGAAGATTGCTTGAAGGATTGGGTGCTTCTTCCTGAAAACAAATATAACAAGAGTGGTTTTGAACTAGAGATGATGGCGGAAGAGGCTAAGGATTCTGAGGATGAGGCGGAAGATTCCAAGCTGGGGCAATCAGGGGGAAGGACTATAAGCAAAAGTCCCCTAGGTTCAAAATTTGGCACAGCTGTGACTCATGGATCGTCAAAATCTCTAAGAGAGGAGGCATCAAAAGCCATCCCAAATTCTACTGGTCCACAAGTTTTTCCAAATGCCAATAAGGGTAAAGACTCTTCGATTACTACAGGAAATAAGAACAATTCTGATCAAGACGTAGACTTGCATAATATTAGCAACCTGAAGGTAAGCTGTCAGGTTCCTGACGTTTCTTTGCATTCTACATCATGTCAGCTACATGAATCATATGTTAGGACCATTGAGTCTAAGAATGCTGATTTTCCAAAGGCACCTGGCTTCCAGGATATTGACATTACTGGAAATACAAATTCATCTGGTCTGTGGCCTAATCTGCGTGATGACAATTTGGAGACCAAGAAGTTAAGTTACACAAGATCAACTTCTACAAGTGCTGATGGACTTGCACATTCAGATGAAAAGCTCGGTGCTACGAGTTATTCTAGGAAGAACCAAAAAGGGTTTACCTTTTCCAGGGTAGTAGATCAATGTGAAGACAGAGAAGGCAGCAATCTTGAAACCCCTTCCACCAAGGTAGAAAAGGCAAGTGAGGTAATCAAATCTGCATGTGTTGAAGGTTCTGGGAAAGAAACTGGTGTTATTCAAGAGGATTATCAAAATAATTCATTGCCTCAAAAGAGGACAAATGAAGCTGCTTCTTCTACCAAACTAAAATCAAGAAAGATCACTAGATCGAAAGTGCCATCTGTGGTTGATGAGCCACCTGTGTCTGATGGCTTTCTTTCTGTTGACAAAGATGGTAGAAATAACTTAAATACCTGCTTGGTTTCTAAATCCGCAGCTTCTGCCTCCAACACATTGGCATTTGATAAGCCTATCTCAGGAAATGCAGAATCTGCTCAACGTGATAATGCTTATCAGAATTCAGCACAAAAGACTGTTCAGAGCTTAATCAAGTCTAAAGATAGTGGTGAGCCTGATGCAACGGTTTTTGGAAAGGGGCAAGGTGATAACGAAGCAGAGCAACTTAATATCACCACACATCTTGAGTGTTCATCACCAGGAAAGAATTCAAAGAATGAAGGATTTCCTGGTCTTGATAATTGGGATTTAAGCAATGAAGAAAGCAATAAGCCGATTAGAAAGTCACCGCGCAAGAAGTCAGCTGCCAAGAGAACTTTGGGTTCTAGACCCAGAAAAGGTGTTACTGCTAAACTGAAAAGTTCAGTTTGCTTGAATAAAACTACTCAGCGAGATGAAGGTGTAAGTTTTTCCAGCAGAAGCAAAGAAATAGCAACTTCTGGTGTGAAGGAGCGTCACGCATCACCCCAAATCCTTGATGTTAACAAATTGATGGAGCAAAAACCGGTTAGTGAGTATGCAGAAGATGCTGGTGGCAGAACTGATTTTTTGGATGACGAAACTGAGGCTCCAGATGACAAATGTGAAGTAGAGTTGGGAATGGCTCCGGATGAAGAATTGGTTCATCTTTCAAATAAAGTAGACACCTCAGCAGAAGAGAAGTTAGAAGCAGTTGACCAGGATAAAAAATGTGAAGAAGCAATGCCTCCTAAAAAAGTCACAAATGAAACTAAAAAACAGAAATTACCTTCAGAGTTAGACTCAACCTCGGTTAAAAAAGACCACAGCTGCAAAGAAGTTAGCGAAATCGAAAAGGCAGTATTTGGGGAGAAGATTCCAAATGAGACAAGAGATGAGGCAGGGATAAAAATCCTGAAAGAAATGTCACTGTCTGTACCTTCTGATATAAGTGAGAACTCAAATGCACCAAAAAATAAGCTCGAGAATTTTATTGAAGAGGAAAAGGAGAATAGACCAAATGATGAAGAGCATGGTTTTGAGGAGAGAAGAAATGTTGGGAATCGAACTACTAAATCTAGTGCTAAGCCAGCAAATATCAAGTCTAAGGAAATGAAACACGCTCCATCTATATCAGAATTTAAGGCAAGAGTAAAACCTGAAACCACATGTTTTATTTTAAGTGGCCATCGCCTACAGAGAAAGGAGTTTCAGCAGGTGATCAAGCGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCTCCAGATCCTATAAGGAGGACAGAGAAATTTTTTGCCGCTACTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAAGTGCCAGTAGCCAGGCAGGAAAATTATTGCCAGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGCGAGGACGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGCATTGTTGTATATGGTGATTGTTTTGCTCCACCTTTGGATACTCTTAAGCGTGCGGTCAAAGCTGGAGATGGAACAATATTAGCAACATCTCCTCCTTATACTCGCTTTCTTGATACTGGGGTCGACTATGCCATAGTTAGCCCTGGCATGCCACGTGTCGATTTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTACTTGGTTGAGTACGTCTGCAAGCCGGGGTTCTCCCTTGAGAGACACGCATGTACGGCACTCATGCTTTGGCAGATAGGTCATTTGCAAAACTTCAAAGTAAGGCAGAAGAGATTATTGAGGAGGTCATTTACCAAACATCAAAGTAAGGCAGAAGAGATTATCAAGGAGGTCATTCCTCATGAGGGTTGCAATGATGACGATGTAGCTTGCCAAGTATGTGGATCGCGGGAAAGAGGAGATTTGATGCTGATTTGTGGTGATGAAACTGGTTCCATTGGCTGTGGAGTGGGTACCCATATTGATTGCTGCAATCCTCCGCTGACAGCTATTCCCGAGGAGGATTGGTTTTGCCCAAAATGCATTAGAATCCAAAAATGCTCAAAAAAAGTCAATAAAAGTAAAAAGGGTGCATTGTCTTCATCAAAGGCCAAGTGA

Protein sequence

>MsaT004185.1

MLETSHSSRVFRGVHFALFGFDHLTENKIRFKLVNGGGVDAGKNTGNCTHVIVDKIAYDGKMLVTALWVEHSADVGMPVDATSTAKDLDGIPGAKDLVVCLTGYLRQDRDDIMTMVGLMGAQFSAAGRKQGEKYELAKRLATIKLVNHRWLEDCLKDWVLLPENKYNKSGFELEMMAEEAKDSEDEAEDSKLGQSGGRTISKSPLGSKFGTAVTHGSSKSLREEASKAIPNSTGPQVFPNANKGKDSSITTGNKNNSDQDVDLHNISNLKVSCQVPDVSLHSTSCQLHESYVRTIESKNADFPKAPGFQDIDITGNTNSSGLWPNLRDDNLETKKLSYTRSTSTSADGLAHSDEKLGATSYSRKNQKGFTFSRVVDQCEDREGSNLETPSTKVEKASEVIKSACVEGSGKETGVIQEDYQNNSLPQKRTNEAASSTKLKSRKITRSKVPSVVDEPPVSDGFLSVDKDGRNNLNTCLVSKSAASASNTLAFDKPISGNAESAQRDNAYQNSAQKTVQSLIKSKDSGEPDATVFGKGQGDNEAEQLNITTHLECSSPGKNSKNEGFPGLDNWDLSNEESNKPIRKSPRKKSAAKRTLGSRPRKGVTAKLKSSVCLNKTTQRDEGVSFSSRSKEIATSGVKERHASPQILDVNKLMEQKPVSEYAEDAGGRTDFLDDETEAPDDKCEVELGMAPDEELVHLSNKVDTSAEEKLEAVDQDKKCEEAMPPKKVTNETKKQKLPSELDSTSVKKDHSCKEVSEIEKAVFGEKIPNETRDEAGIKILKEMSLSVPSDISENSNAPKNKLENFIEEEKENRPNDEEHGFEERRNVGNRTTKSSAKPANIKSKEMKHAPSISEFKARVKPETTCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAATASGRWILKTDFLSASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRAVKAGDGTILATSPPYTRFLDTGVDYAIVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHACTALMLWQIGHLQNFKVRQKRLLRRSFTKHQSKAEEIIKEVIPHEGCNDDDVACQVCGSRERGDLMLICGDETGSIGCGVGTHIDCCNPPLTAIPEEDWFCPKCIRIQKCSKKVNKSKKGALSSSKAK*