AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG004191


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004191 MtrunA17_Chr1g0194741 96.472 652 20 2 1 649 1 652 0.0 1283
MsaG004191 MtrunA17_Chr1g0197591 61.706 1102 348 20 10 1096 3 1045 0.0 1223
MsaG004191 MtrunA17_Chr1g0194731 95.415 458 19 2 649 1105 1 457 0.0 833
MsaG004191 MtrunA17_Chr8g0371601 28.772 570 352 17 129 674 196 735 4.47e-43 171
MsaG004191 MtrunA17_Chr8g0371601 31.658 199 111 7 912 1087 957 1153 1.34e-16 85.5
MsaG004191 MtrunA17_Chr5g0405701 28.086 559 330 16 152 674 251 773 6.67e-42 167
MsaG004191 MtrunA17_Chr5g0405701 34.483 145 71 4 966 1087 1040 1183 3.42e-16 84.3
MsaG004191 MtrunA17_Chr8g0343551 73.239 71 19 0 1026 1096 12 82 1.72e-31 118
MsaG004191 MtrunA17_Chr8g0377481 31.429 315 177 10 383 679 381 674 3.43e-31 132
MsaG004191 MtrunA17_Chr8g0377481 32.609 138 69 6 973 1097 838 964 1.37e-13 75.5
MsaG004191 MtrunA17_Chr3g0122391 28.188 447 253 18 272 678 305 723 3.04e-29 126
MsaG004191 MtrunA17_Chr3g0122391 32.716 162 83 8 948 1097 874 1021 3.36e-14 77.8
MsaG004191 MtrunA17_Chr5g0447641 26.158 367 215 12 342 685 575 908 1.15e-23 108
MsaG004191 MtrunA17_Chr5g0447641 33.333 150 62 7 976 1099 1074 1211 1.72e-12 72.0
MsaG004191 MtrunA17_Chr8g0392301 26.075 372 221 9 351 684 340 695 5.51e-22 102
MsaG004191 MtrunA17_Chr8g0392301 33.775 151 75 5 964 1097 849 991 7.37e-15 79.7
MsaG004191 MtrunA17_Chr3g0136601 29.464 336 180 14 367 669 335 646 4.54e-20 96.7
MsaG004191 MtrunA17_Chr4g0013831 27.049 366 203 12 364 708 310 632 2.09e-18 90.9
MsaG004191 MtrunA17_Chr1g0150511 26.027 365 203 12 399 713 381 728 7.84e-18 89.4
MsaG004191 MtrunA17_Chr7g0269631 29.130 230 127 7 454 678 393 591 6.63e-16 82.8
MsaG004191 MtrunA17_Chr8g0364781 36.496 137 61 6 979 1102 15 138 5.27e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004191 AT2G47430.1 37.892 1148 616 25 11 1101 12 1119 0.0 674
MsaG004191 AT2G17820.1 33.159 383 232 10 296 674 400 762 1.22e-43 173
MsaG004191 AT2G17820.1 31.658 199 97 7 927 1096 1004 1192 3.40e-16 84.7
MsaG004191 AT1G27320.1 27.475 404 225 12 380 769 436 785 2.13e-30 130
MsaG004191 AT1G27320.1 29.221 154 75 5 973 1102 887 1030 1.13e-11 69.7
MsaG004191 AT2G01830.2 27.596 366 221 11 338 677 415 762 4.74e-28 123
MsaG004191 AT2G01830.2 37.037 135 67 4 973 1097 942 1068 7.50e-16 83.6
MsaG004191 AT2G01830.1 27.596 366 221 11 338 677 392 739 5.06e-28 123
MsaG004191 AT2G01830.1 37.037 135 67 4 973 1097 919 1045 7.36e-16 83.6
MsaG004191 AT2G01830.4 27.596 366 221 11 338 677 392 739 5.06e-28 123
MsaG004191 AT2G01830.4 37.037 135 67 4 973 1097 919 1045 7.36e-16 83.6
MsaG004191 AT2G01830.6 27.596 366 221 11 338 677 392 739 5.06e-28 123
MsaG004191 AT2G01830.6 37.037 135 67 4 973 1097 919 1045 7.36e-16 83.6
MsaG004191 AT2G01830.3 27.596 366 221 11 338 677 392 739 5.06e-28 123
MsaG004191 AT2G01830.3 37.037 135 67 4 973 1097 919 1045 7.36e-16 83.6
MsaG004191 AT2G01830.5 27.596 366 221 11 338 677 404 751 6.07e-28 122
MsaG004191 AT2G01830.5 37.500 136 65 5 973 1097 931 1057 8.26e-16 83.6
MsaG004191 AT5G35750.1 29.305 331 173 12 380 680 573 872 2.93e-25 114
MsaG004191 AT5G35750.1 31.544 149 68 5 973 1097 1032 1170 9.78e-12 70.1
MsaG004191 AT5G10720.1 30.403 273 153 11 399 669 371 608 8.01e-19 93.2
MsaG004191 AT1G66340.1 28.481 316 175 10 378 686 323 594 8.34e-19 92.8
MsaG004191 AT2G40940.1 25.231 325 186 9 364 676 309 588 4.87e-15 80.1

Find 202 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTATGATTATATCTTAA+TGG 0.123404 1:+66581944 MsaT004191.1:CDS
TTGCTACCCCATTGATATTA+TGG 0.146001 1:+66577731 MsaT004191.1:CDS
GCTTATCTTGCAGGCCTTAT+TGG 0.151594 1:+66578719 MsaT004191.1:CDS
GATAGTGTTGTTAGATATTA+TGG 0.179176 1:-66577310 None:intergenic
AGGTGACATTAGTAGAATTA+AGG 0.196080 1:-66576784 None:intergenic
TGTGATCTAGGTTCATTTCT+TGG 0.224149 1:-66581612 None:intergenic
ATTGATGCAAGTTGGATAAA+TGG 0.240438 1:+66577336 MsaT004191.1:CDS
AGTTGTTACTAATTCAAAAT+TGG 0.240702 1:+66578766 MsaT004191.1:CDS
GTTTCAATTCAAGCTGTTAA+TGG 0.241296 1:+66577612 MsaT004191.1:CDS
GATGGAAAAGTTATTGTAAA+AGG 0.243895 1:+66577552 MsaT004191.1:CDS
TCAAGGGACAAAATCATATT+TGG 0.248361 1:+66577521 MsaT004191.1:CDS
TTCTGAACTTGGTTTCAAAT+TGG 0.254047 1:-66578792 None:intergenic
ACTGACTTGTGATTCTCTTT+AGG 0.274643 1:-66579506 None:intergenic
TTCACATGAATTTGCATCAT+TGG 0.275818 1:+66577371 MsaT004191.1:CDS
AGCAAAAGCAAGACTCTTAT+TGG 0.282452 1:-66578675 None:intergenic
GATCTTCGTGCTTATCTTGC+AGG 0.288028 1:+66578710 MsaT004191.1:CDS
ATTAGTAACAACTAATTTAG+AGG 0.290279 1:-66578756 None:intergenic
ACAAAAGTCCTATGTTAATC+TGG 0.291733 1:+66581692 MsaT004191.1:CDS
TTCTTTCCACTTAATGGTTT+AGG 0.294905 1:-66581771 None:intergenic
AGTAAATGCTCTTTCTTGAT+AGG 0.295947 1:-66582233 None:intergenic
TTCCTGAGTTCGGTGGTAAT+TGG 0.302430 1:+66581571 MsaT004191.1:CDS
TTTGAAACCAAGTTCAGAAT+TGG 0.304813 1:+66578796 MsaT004191.1:CDS
TGCTACCCCATTGATATTAT+GGG 0.314042 1:+66577732 MsaT004191.1:CDS
GTGTTAGCTGTCCCACAAAA+TGG 0.319563 1:+66578464 MsaT004191.1:CDS
TTCATCTTTCATGATCTTGC+TGG 0.339861 1:+66576392 MsaT004191.1:CDS
ATGATTTACCTAGCAAATCT+TGG 0.341823 1:-66578850 None:intergenic
TTGGAAGGTACTTGTGATCT+AGG 0.351381 1:-66581624 None:intergenic
GCTGTTAAATTTACTGATGA+AGG 0.355175 1:+66579281 MsaT004191.1:CDS
GGTGACATTAGTAGAATTAA+GGG 0.356467 1:-66576783 None:intergenic
ATTCAAGCTGTTAATGGTAA+TGG 0.357123 1:+66577618 MsaT004191.1:CDS
GTAGATTGTTCCAAGTCATT+AGG 0.359195 1:+66581544 MsaT004191.1:CDS
TCCAACCAAACAACTTTACT+AGG 0.359940 1:-66581444 None:intergenic
GTGATATCAAAACCATTTCA+TGG 0.361788 1:+66581519 MsaT004191.1:CDS
CCAACAAGATCCATGTCTTA+TGG 0.374116 1:+66579445 MsaT004191.1:CDS
ACAATTCGTACTGCTAGTTC+TGG 0.375945 1:+66580964 MsaT004191.1:CDS
ATGCTCTTTCTTGATAGGTT+TGG 0.386579 1:-66582228 None:intergenic
ACACCTTTCTTCATTGCCAT+TGG 0.389100 1:-66579155 None:intergenic
GAGACAGTGAATTATGAGTA+TGG 0.390792 1:+66580898 MsaT004191.1:CDS
TCACATGAATTTGCATCATT+GGG 0.392411 1:+66577372 MsaT004191.1:CDS
GTATTTGAAGTGGATGATAC+AGG 0.399459 1:+66579473 MsaT004191.1:CDS
TCAATCCTAGTAAAGTTGTT+TGG 0.399703 1:+66581439 MsaT004191.1:CDS
TAGACACACACTTTCATCAT+TGG 0.402470 1:-66581643 None:intergenic
TTCTATTCCCATAATATCAA+TGG 0.403961 1:-66577739 None:intergenic
GTAGGAACTGGCTTGGGACT+TGG 0.405420 1:+66579572 MsaT004191.1:CDS
GAGGGGCTAACATGGAGTTT+TGG 0.406382 1:-66581009 None:intergenic
AGTCTTCGGAGATGAGTTCT+AGG 0.419954 1:+66581220 MsaT004191.1:CDS
ATCTTACAAAGCTTAGAAAA+TGG 0.421080 1:-66581390 None:intergenic
AACAATCTACTACCATGAAA+TGG 0.422179 1:-66581531 None:intergenic
AACACTCTTGTGGTTAGTCT+TGG 0.422431 1:-66579351 None:intergenic
ATTAGGCTTCTTCCTGAGTT+CGG 0.422475 1:+66581561 MsaT004191.1:CDS
ACATTTCAATCAAACCAATA+AGG 0.422617 1:-66578733 None:intergenic
CAGTTGTTCATAGAGAGCTT+AGG 0.425096 1:+66581096 MsaT004191.1:CDS
TTTGTTGATGATGATTTCAT+TGG 0.427329 1:-66576737 None:intergenic
TCATATTTGGCTACCAAAGA+TGG 0.429385 1:+66577534 MsaT004191.1:CDS
ATGGCTACTTTGAGATCTCT+TGG 0.429609 1:+66581837 MsaT004191.1:CDS
TTATATCTTAATGGATTGTC+AGG 0.430305 1:+66581953 MsaT004191.1:CDS
CCATAAGACATGGATCTTGT+TGG 0.432881 1:-66579445 None:intergenic
AGTTGTTCATAGAGAGCTTA+GGG 0.434205 1:+66581097 MsaT004191.1:CDS
CCACCATACTCAATGAATAC+TGG 0.434464 1:+66576345 None:intergenic
TCCTAGTAAAGTTGTTTGGT+TGG 0.434623 1:+66581443 MsaT004191.1:CDS
TTGGTCTCCAATTCTGAACT+TGG 0.436377 1:-66578803 None:intergenic
TCTATTCCCATAATATCAAT+GGG 0.437409 1:-66577738 None:intergenic
GAAAGGTGTAGAAGTTGTAT+TGG 0.437547 1:+66579169 MsaT004191.1:CDS
CATAAGACATGGATCTTGTT+GGG 0.439105 1:-66579444 None:intergenic
GACAAGCTGACCACTGAGAC+TGG 0.440049 1:+66582188 MsaT004191.1:CDS
AAGAGTTCCTTTCAAAGCTA+TGG 0.440702 1:+66581272 MsaT004191.1:CDS
CCTTTCAAAGCTATGGATCA+TGG 0.441919 1:+66581279 MsaT004191.1:CDS
TCAAAGTTCACCGGAGTCTT+CGG 0.442260 1:+66581206 MsaT004191.1:CDS
AATCCAAGTCATAAAGAAAA+GGG 0.444621 1:+66578500 MsaT004191.1:CDS
CACTGTCTCATTCTCACATA+AGG 0.445103 1:-66580884 None:intergenic
TCTGTTGGCCAAGTAGGAAC+TGG 0.448175 1:+66579560 MsaT004191.1:CDS
TATCATCTTGATCAATTGCT+TGG 0.448900 1:-66581494 None:intergenic
GGAGACCAACTTAAAACAAA+TGG 0.449087 1:+66578817 MsaT004191.1:CDS
TAATCCAAGTCATAAAGAAA+AGG 0.450153 1:+66578499 MsaT004191.1:CDS
ATTATCATTGATGCAAATGC+AGG 0.450739 1:+66581366 MsaT004191.1:CDS
TATGTTAATCTGGGAAGAAA+AGG 0.456024 1:+66581702 MsaT004191.1:CDS
ATGGTAATGGAGATCTAATA+AGG 0.458097 1:+66577631 MsaT004191.1:CDS
GTTGTGTTATTGTAGGCATA+TGG 0.458179 1:+66576575 MsaT004191.1:intron
GCCTCAAACCCATCCTTCAC+TGG 0.462390 1:-66582092 None:intergenic
GTCCCAAGCCAGTTCCTACT+TGG 0.464624 1:-66579568 None:intergenic
TAGGAACTGGCTTGGGACTT+GGG 0.466445 1:+66579573 MsaT004191.1:CDS
GGCCAAGTAGGAACTGGCTT+GGG 0.467713 1:+66579566 MsaT004191.1:CDS
GAGAATTCTGTTGGCCAAGT+AGG 0.471261 1:+66579554 MsaT004191.1:CDS
AGAATAGGAGGGGTCTCTCT+TGG 0.472858 1:+66577450 MsaT004191.1:CDS
GAAAATAGTGACATAATGTA+AGG 0.473865 1:+66582275 MsaT004191.1:CDS
GTTGTATTGGACTCTTGTAA+TGG 0.481853 1:+66579182 MsaT004191.1:CDS
TGATATTATGGGAATAGAAT+CGG 0.482331 1:+66577743 MsaT004191.1:CDS
GCCTCTGAGAGGGGCTAACA+TGG 0.484367 1:-66581017 None:intergenic
ACTTGGGATTGTGCAGTCAT+TGG 0.486079 1:+66579589 MsaT004191.1:CDS
TCCATTAAGATATAATCATA+AGG 0.487002 1:-66581945 None:intergenic
TCAGCTAGAATCAACAGAAT+AGG 0.488864 1:+66577435 MsaT004191.1:CDS
AGCAATCCTAAACCATTAAG+TGG 0.490150 1:+66581765 MsaT004191.1:CDS
GCCAGTGAAGGATGGGTTTG+AGG 0.491157 1:+66582091 MsaT004191.1:CDS
TCTTGATAGGTTTGGTAATG+TGG 0.491525 1:-66582220 None:intergenic
TAATCAACACTACTCTCAAA+AGG 0.491934 1:-66581471 None:intergenic
TGATTTACCTAGCAAATCTT+GGG 0.494105 1:-66578849 None:intergenic
ATTCACGTGTGAAAGGTGAT+AGG 0.495625 1:+66579219 MsaT004191.1:CDS
TTCAATGCTTGAAATAATAA+CGG 0.495873 1:-66577105 None:intergenic
GGTATTGTGGACAAGGAAGT+TGG 0.498320 1:+66580823 MsaT004191.1:CDS
TTGACACAAATCTCATACAT+AGG 0.498626 1:+66577141 MsaT004191.1:CDS
CAAGTTAAAGAGAATTCTGT+TGG 0.500351 1:+66579545 MsaT004191.1:CDS
CAAGATAAGCACGAAGATCA+TGG 0.500470 1:-66578706 None:intergenic
CAGGAAGAAGCCTAATGACT+TGG 0.500658 1:-66581554 None:intergenic
AGGAGGATTAGTAAAATCCT+TGG 0.504201 1:-66581925 None:intergenic
TTCTAGGTACGTTTGATGCA+TGG 0.504400 1:+66580793 MsaT004191.1:intron
TATGCTGAGAAAGATTTGTA+TGG 0.505750 1:+66581818 MsaT004191.1:CDS
ATTCCAGTGTCATGGTTCAC+AGG 0.507966 1:-66577273 None:intergenic
CAGTGTCATGGTTCACAGGT+TGG 0.508152 1:-66577269 None:intergenic
GACAGATGCCAGTGAAGGAT+GGG 0.510140 1:+66582084 MsaT004191.1:intron
CCATGATCCATAGCTTTGAA+AGG 0.512640 1:-66581279 None:intergenic
AATGAATACTGGTTTATCAA+TGG 0.512649 1:+66576356 None:intergenic
CAAAAGTCCTATGTTAATCT+GGG 0.514695 1:+66581693 MsaT004191.1:CDS
CTTTCTTCATTGCCATTGGA+TGG 0.517203 1:-66579151 None:intergenic
GACAAGGAAGTTGGCAAAAG+AGG 0.518131 1:+66580832 MsaT004191.1:CDS
ATGATAATCAAAACAAAACT+TGG 0.518308 1:-66581351 None:intergenic
TGGAGATCTAATAAGGAATG+AGG 0.518743 1:+66577638 MsaT004191.1:CDS
CATCCAATGGCAATGAAGAA+AGG 0.522261 1:+66579152 MsaT004191.1:CDS
CTATCAATATTGATGCAAGT+TGG 0.529019 1:+66577328 MsaT004191.1:CDS
CGTTTGATGCATGGAGACAT+TGG 0.531016 1:+66580802 MsaT004191.1:CDS
GGACAGATGCCAGTGAAGGA+TGG 0.536750 1:+66582083 MsaT004191.1:intron
GAGCTTAGGGATTAAAGTCA+AGG 0.538142 1:+66581110 MsaT004191.1:CDS
GAAGGCTCAGGCCTCTGAGA+GGG 0.538284 1:-66581027 None:intergenic
AATTGTGCCCAAGATTTGCT+AGG 0.541010 1:+66578842 MsaT004191.1:CDS
GACAATGCGAGTGATATAAT+CGG 0.541959 1:-66577493 None:intergenic
CTTTCTCTCAGCTTGTTCTG+TGG 0.542457 1:-66578648 None:intergenic
ATCTCATACATAGGAATGGA+AGG 0.542582 1:+66577150 MsaT004191.1:CDS
TATGAGTATGGATCAACCTC+AGG 0.543399 1:+66580910 MsaT004191.1:CDS
CATTCTTTACATTACTGATG+AGG 0.545789 1:+66581056 MsaT004191.1:CDS
CTCGCATTGTCGATCGTCAA+GGG 0.547004 1:+66577505 MsaT004191.1:CDS
TATTTGAAGTGGATGATACA+GGG 0.550570 1:+66579474 MsaT004191.1:CDS
CAAGGTGAAATAGAAGAAAG+TGG 0.553365 1:+66581735 MsaT004191.1:CDS
GCTAGAATCAACAGAATAGG+AGG 0.555811 1:+66577438 MsaT004191.1:CDS
GACACAAGCAAGATTGAGGC+AGG 0.556358 1:+66579062 MsaT004191.1:CDS
TGTACTCTAACTCATCTAGT+GGG 0.561197 1:+66577217 MsaT004191.1:CDS
ACTATTGACCAATGTGAGAA+TGG 0.561890 1:+66581867 MsaT004191.1:CDS
AGAGAGATGGAGAAACACTA+TGG 0.561980 1:+66582128 MsaT004191.1:CDS
ATCAAACATTCACGTGTGAA+AGG 0.562833 1:+66579212 MsaT004191.1:CDS
ACAAATCTCATACATAGGAA+TGG 0.563392 1:+66577146 MsaT004191.1:CDS
AGCAAGATCATGAAAGATGA+AGG 0.564158 1:-66576390 None:intergenic
CTGTTAAATTTACTGATGAA+GGG 0.567152 1:+66579282 MsaT004191.1:CDS
GACACCATGTTGGTATCTCA+TGG 0.568120 1:+66576622 MsaT004191.1:CDS
TGGCCAAGTAGGAACTGGCT+TGG 0.570068 1:+66579565 MsaT004191.1:CDS
AGGATGGGTTTGAGGCAACA+AGG 0.571342 1:+66582099 MsaT004191.1:CDS
ACTCGCATTGTCGATCGTCA+AGG 0.572216 1:+66577504 MsaT004191.1:CDS
ATGTAAAGAATGACATGTGA+AGG 0.573120 1:-66581045 None:intergenic
TCTTGCAAGGATCAAGCTGT+TGG 0.574460 1:+66577669 MsaT004191.1:CDS
CACACACTTTCATCATTGGA+AGG 0.574607 1:-66581639 None:intergenic
GTGTTGTGAAATCTTTGTCT+TGG 0.576550 1:+66579369 MsaT004191.1:CDS
GGAGATCTAATAAGGAATGA+GGG 0.576644 1:+66577639 MsaT004191.1:CDS
GGCTGTGAGAACTGTTCAAG+AGG 0.577188 1:+66581896 MsaT004191.1:CDS
AAGATTTCACAACACTCTTG+TGG 0.579252 1:-66579361 None:intergenic
ATCCAATTACCACCGAACTC+AGG 0.583478 1:-66581573 None:intergenic
GCTGACCACTGAGACTGGAA+TGG 0.584171 1:+66582193 MsaT004191.1:CDS
AGTTGATTTGTACCATCCAA+TGG 0.585418 1:+66579139 MsaT004191.1:CDS
ACTTGACACAAGCAAGATTG+AGG 0.587753 1:+66579058 MsaT004191.1:CDS
TATCAGTGATCAAAGTTCAC+CGG 0.592353 1:+66581197 MsaT004191.1:CDS
TTGCCTCATTGACACCATGT+TGG 0.593071 1:+66576612 MsaT004191.1:CDS
AAGTGTGGAACAATGTTGGA+AGG 0.593740 1:+66581665 MsaT004191.1:CDS
GCATGGAGACATTGGTATTG+TGG 0.595262 1:+66580810 MsaT004191.1:CDS
AGAAAAGGTTCTGTTCATCA+AGG 0.596627 1:+66581717 MsaT004191.1:CDS
CCTCTTCACCATTCTCACAT+TGG 0.597986 1:-66581875 None:intergenic
ATACAAATCTTTCTCAGCAT+AGG 0.598094 1:-66581816 None:intergenic
AGGCTTCTTCCTGAGTTCGG+TGG 0.599749 1:+66581564 MsaT004191.1:CDS
GGCACATAACAGTTAGAGCA+TGG 0.600016 1:+66579303 MsaT004191.1:CDS
TGATTTATCCTCTCTCCTTG+AGG 0.602251 1:+66579112 MsaT004191.1:CDS
TGAGGGAGCTGTATCTTGCA+AGG 0.603521 1:+66577656 MsaT004191.1:CDS
AAGGCTCAGGCCTCTGAGAG+GGG 0.603713 1:-66581026 None:intergenic
AGAATGACATGTGAAGGCTC+AGG 0.609075 1:-66581039 None:intergenic
AACAAGGGAGATAAGAGAGA+TGG 0.610075 1:+66582115 MsaT004191.1:CDS
GAAGTGGATGATACAGGGAA+AGG 0.611039 1:+66579479 MsaT004191.1:CDS
GTCTAAGTGTGGAACAATGT+TGG 0.612167 1:+66581661 MsaT004191.1:CDS
ATGTACTCTAACTCATCTAG+TGG 0.614715 1:+66577216 MsaT004191.1:CDS
GAACTCATCTCCGAAGACTC+CGG 0.615301 1:-66581216 None:intergenic
CAACCTGTGAACCATGACAC+TGG 0.615905 1:+66577270 MsaT004191.1:CDS
AACTACATCCTCAAGGAGAG+AGG 0.617424 1:-66579120 None:intergenic
AGACATTGGTATTGTGGACA+AGG 0.619613 1:+66580816 MsaT004191.1:CDS
TGTTCAAGAGGGTTTAACCA+AGG 0.619844 1:+66581908 MsaT004191.1:CDS
GGATGGGTTTGAGGCAACAA+GGG 0.621462 1:+66582100 MsaT004191.1:CDS
GTACTCTAACTCATCTAGTG+GGG 0.623166 1:+66577218 MsaT004191.1:CDS
AACATGGTGTCAATGAGGCA+AGG 0.632743 1:-66576610 None:intergenic
AGTGTGGAACAATGTTGGAA+GGG 0.632865 1:+66581666 MsaT004191.1:CDS
CTAGAATCAACAGAATAGGA+GGG 0.634091 1:+66577439 MsaT004191.1:CDS
AGTTAGAGCATGGACTCAGA+AGG 0.635220 1:+66579313 MsaT004191.1:CDS
ACAAATCAACTACATCCTCA+AGG 0.638614 1:-66579127 None:intergenic
AATACAAAATCCATAAGACA+TGG 0.641986 1:-66579455 None:intergenic
GCTGTGAGAACTGTTCAAGA+GGG 0.647146 1:+66581897 MsaT004191.1:CDS
TACTCTAACTCATCTAGTGG+GGG 0.650632 1:+66577219 MsaT004191.1:CDS
CTTGGTGTGAACATCAGAGA+AGG 0.651051 1:-66576804 None:intergenic
CCAATGTGAGAATGGTGAAG+AGG 0.657628 1:+66581875 MsaT004191.1:CDS
TGAAGGCTCAGGCCTCTGAG+AGG 0.658399 1:-66581028 None:intergenic
TGAAAGTGTGTGTCTAAGTG+TGG 0.660501 1:+66581650 MsaT004191.1:CDS
TGTGAACCATGACACTGGAA+TGG 0.664217 1:+66577275 MsaT004191.1:CDS
ATACCAACATGGTGTCAATG+AGG 0.665423 1:-66576615 None:intergenic
ATTAAGATATAATCATAAGG+AGG 0.668188 1:-66581942 None:intergenic
AATTGGACAGATGCCAGTGA+AGG 0.672213 1:+66582079 MsaT004191.1:intron
TATGAGATTTGTGTCAAGTG+AGG 0.675612 1:-66577135 None:intergenic
GAAATCCATTCCAGTCTCAG+TGG 0.681772 1:-66582198 None:intergenic
TAGAATCAACAGAATAGGAG+GGG 0.688378 1:+66577440 MsaT004191.1:CDS
TCCATGTTAGCCCCTCTCAG+AGG 0.694979 1:+66581016 MsaT004191.1:CDS
CTTCTCTGATGTTCACACCA+AGG 0.706528 1:+66576805 MsaT004191.1:CDS
CTATTCCCATAATATCAATG+GGG 0.765530 1:-66577737 None:intergenic
GTGACCATGAGATACCAACA+TGG 0.814649 1:-66576626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 66576357 66582295 66576357 ID=MsaG004191
Chr1 mRNA 66576357 66582295 66576357 ID=MsaT004191.1;Parent=MsaG004191
Chr1 exon 66576357 66576413 66576357 ID=MsaT004191.1.exon1;Parent=MsaT004191.1
Chr1 CDS 66576357 66576413 66576357 ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1 exon 66576590 66576826 66576590 ID=MsaT004191.1.exon2;Parent=MsaT004191.1
Chr1 CDS 66576590 66576826 66576590 ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1 exon 66577099 66577764 66577099 ID=MsaT004191.1.exon3;Parent=MsaT004191.1
Chr1 CDS 66577099 66577764 66577099 ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1 exon 66578458 66578863 66578458 ID=MsaT004191.1.exon4;Parent=MsaT004191.1
Chr1 CDS 66578458 66578863 66578458 ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1 exon 66579042 66579610 66579042 ID=MsaT004191.1.exon5;Parent=MsaT004191.1
Chr1 CDS 66579042 66579610 66579042 ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1 exon 66580799 66581974 66580799 ID=MsaT004191.1.exon6;Parent=MsaT004191.1
Chr1 CDS 66580799 66581974 66580799 ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1 exon 66582089 66582295 66582089 ID=MsaT004191.1.exon7;Parent=MsaT004191.1
Chr1 CDS 66582089 66582295 66582089 ID=cds.MsaT004191.1;Parent=MsaT004191.1
Gene Sequence

>MsaT004191.1

ATGAATACTGGTTTATCAATGGCATTACTTCGACCTTCATCTTTCATGATCTTGCTGGCATATGGTGCACTAATAGTCCTTGCCTCATTGACACCATGTTGGTATCTCATGGTCACACATATTGAGAAAAGTGTGAATTTGCACTCAGCAAATATTGTGTCACAATTGCAATCAGAAATTGAGTACTCAGCTGAACTATTGCAACCAATGAAATCATCATCAACAAATTTATCTACATTATTGAGCTCAACCCTTAATTCTACTAATGTCACCTTCTCTGATGTTCACACCAAGGTGGCTCCGTTATTATTTCAAGCATTGAAGACAATTCCTCACTTGACACAAATCTCATACATAGGAATGGAAGGTCTTTTTTTCACACACTACAATGATGGTGATCAAGTTCTAGCAATGTACTCTAACTCATCTAGTGGGGGTGCTTCAAACAAAACTATATACTATATCCAACCTGTGAACCATGACACTGGAATGGTTTTTGGGGAAGCCATAATATCTAACAACACTATCAATATTGATGCAAGTTGGATAAATGGAACAAATAATATTTCACATGAATTTGCATCATTGGGAACAAAGTTGAATAATGTTAGTGATCTTTTGTTCATGAATTCAGCTAGAATCAACAGAATAGGAGGGGTCTCTCTTGGATTTTCGACGAAAGCAATAACCGATTATATCACTCGCATTGTCGATCGTCAAGGGACAAAATCATATTTGGCTACCAAAGATGGAAAAGTTATTGTAAAAGGAATTCAAAATATCCGTTTGATGATTTTTAATGATAGTGTTTCAATTCAAGCTGTTAATGGTAATGGAGATCTAATAAGGAATGAGGGAGCTGTATCTTGCAAGGATCAAGCTGTTGGTTCTAGTTTGAATATTCATGATACTCAATATTTGATTCATTGCTACCCCATTGATATTATGGGAATAGAATCGGTGCATGTGTTAGCTGTCCCACAAAATGGATCTCTCATCTTTAATCCAAGTCATAAAGAAAAGGGATTGACACTCTTGATTGTAATGATGATGATGATATTTATTGCTATCTTGAGTTTTCTATTCTTGAATGTTGGAGTGACAAAGAGAGAAATGCATTTGTGTGCATCACTCATACAACAAAAAGAAGCCACAGAACAAGCTGAGAGAAAGAATACCAATAAGAGTCTTGCTTTTGCTACTGCTAGCCATGATCTTCGTGCTTATCTTGCAGGCCTTATTGGTTTGATTGAAATGTCCTCTAAATTAGTTGTTACTAATTCAAAATTGGACACCAATTTGAAACCAAGTTCAGAATTGGAGACCAACTTAAAACAAATGGATAATTGTGCCCAAGATTTGCTAGGACTGTTGAATTCTATACTTGACACAAGCAAGATTGAGGCAGGAAAAATGCAACTAGAGGAAGAGGAATTTGATTTATCCTCTCTCCTTGAGGATGTAGTTGATTTGTACCATCCAATGGCAATGAAGAAAGGTGTAGAAGTTGTATTGGACTCTTGTAATGGCTCAGTGATCAAACATTCACGTGTGAAAGGTGATAGGAGAAAATTGAAGCAAGTTTTGTGTAACTTGCTTAGCAATGCTGTTAAATTTACTGATGAAGGGCACATAACAGTTAGAGCATGGACTCAGAAGGCCAAATTGCAAAAATCCAAGACTAACCACAAGAGTGTTGTGAAATCTTTGTCTTGGTTGTTTAATAAGAAAGACAAAGAATGTGAAGACATAGAAGCTGTGAATTTAGCCCAACAAGATCCATGTCTTATGGATTTTGTATTTGAAGTGGATGATACAGGGAAAGGTATTCCTAAAGAGAATCACAAGTCAGTGTTTGAGAATTATGTTCAAGTTAAAGAGAATTCTGTTGGCCAAGTAGGAACTGGCTTGGGACTTGGGATTGTGCAGTCATTGGTACGTTTGATGCATGGAGACATTGGTATTGTGGACAAGGAAGTTGGCAAAAGAGGAACATGCTTCAAGTTCAATGTGCTTCTCACCTTATGTGAGAATGAGACAGTGAATTATGAGTATGGATCAACCTCAGGTGACAAAAACCAAACCCTAGAGAAAAAATTAACAATTCGTACTGCTAGTTCTGGTTCAAGCATTTGTTCTTTGAGTCCAAAACTCCATGTTAGCCCCTCTCAGAGGCCTGAGCCTTCACATGTCATTCTTTACATTACTGATGAGGAAAGAAGAAGAACTTCGCAGTTGTTCATAGAGAGCTTAGGGATTAAAGTCAAGGTTGTGAAGAGTAGAAATCATCTAATTCATACTCTCAAGAAGATCAAAAAAGAAAAGGGTGACGATATCAGTGATCAAAGTTCACCGGAGTCTTCGGAGATGAGTTCTAGGTGTACATCTTATAACTCTTCTTGTAGTAGAAGAGTTCCTTTCAAAGCTATGGATCATGGAAATGAATATCTATCTTCAATGTTCAAGAAGAAAAACAATGGAGCTGCACCAAGTTTTGTTTTGATTATCATTGATGCAAATGCAGGACCATTTTCTAAGCTTTGTAAGATTGTGTCAAACTTCAAGAAAGATCTTCTCAATCCTAGTAAAGTTGTTTGGTTGGAAAAGCCTTTTGAGAGTAGTGTTGATTACCAAGCAATTGATCAAGATGATATTGTGATATCAAAACCATTTCATGGTAGTAGATTGTTCCAAGTCATTAGGCTTCTTCCTGAGTTCGGTGGTAATTGGATAAGCAATTCTAGTAAACCAAGAAATGAACCTAGATCACAAGTACCTTCCAATGATGAAAGTGTGTGTCTAAGTGTGGAACAATGTTGGAAGGGAACACAAAAGTCCTATGTTAATCTGGGAAGAAAAGGTTCTGTTCATCAAGGTGAAATAGAAGAAAGTGGAGAATCAAGCAATCCTAAACCATTAAGTGGAAAGAAGTTTTTGGTTGTTGATGATAGTCCTATGCTGAGAAAGATTTGTATGGCTACTTTGAGATCTCTTGGTGTGACTACTATTGACCAATGTGAGAATGGTGAAGAGGCTGTGAGAACTGTTCAAGAGGGTTTAACCAAGGATTTTACTAATCCTCCTTATGATTATATCTTAATGGATTGTCAGATGCCAGTGAAGGATGGGTTTGAGGCAACAAGGGAGATAAGAGAGATGGAGAAACACTATGGTCTTCACATTTCTATCATTGCATTATCTGCTGAAATTGACAAGCTGACCACTGAGACTGGAATGGATTTCCACATTACCAAACCTATCAAGAAAGAGCATTTACTCAAAGCTATTGCGTACATAGAAAATAGTGACATAATGTAA

Protein sequence

>MsaT004191.1

MNTGLSMALLRPSSFMILLAYGALIVLASLTPCWYLMVTHIEKSVNLHSANIVSQLQSEIEYSAELLQPMKSSSTNLSTLLSSTLNSTNVTFSDVHTKVAPLLFQALKTIPHLTQISYIGMEGLFFTHYNDGDQVLAMYSNSSSGGASNKTIYYIQPVNHDTGMVFGEAIISNNTINIDASWINGTNNISHEFASLGTKLNNVSDLLFMNSARINRIGGVSLGFSTKAITDYITRIVDRQGTKSYLATKDGKVIVKGIQNIRLMIFNDSVSIQAVNGNGDLIRNEGAVSCKDQAVGSSLNIHDTQYLIHCYPIDIMGIESVHVLAVPQNGSLIFNPSHKEKGLTLLIVMMMMIFIAILSFLFLNVGVTKREMHLCASLIQQKEATEQAERKNTNKSLAFATASHDLRAYLAGLIGLIEMSSKLVVTNSKLDTNLKPSSELETNLKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSSLLEDVVDLYHPMAMKKGVEVVLDSCNGSVIKHSRVKGDRRKLKQVLCNLLSNAVKFTDEGHITVRAWTQKAKLQKSKTNHKSVVKSLSWLFNKKDKECEDIEAVNLAQQDPCLMDFVFEVDDTGKGIPKENHKSVFENYVQVKENSVGQVGTGLGLGIVQSLVRLMHGDIGIVDKEVGKRGTCFKFNVLLTLCENETVNYEYGSTSGDKNQTLEKKLTIRTASSGSSICSLSPKLHVSPSQRPEPSHVILYITDEERRRTSQLFIESLGIKVKVVKSRNHLIHTLKKIKKEKGDDISDQSSPESSEMSSRCTSYNSSCSRRVPFKAMDHGNEYLSSMFKKKNNGAAPSFVLIIIDANAGPFSKLCKIVSNFKKDLLNPSKVVWLEKPFESSVDYQAIDQDDIVISKPFHGSRLFQVIRLLPEFGGNWISNSSKPRNEPRSQVPSNDESVCLSVEQCWKGTQKSYVNLGRKGSVHQGEIEESGESSNPKPLSGKKFLVVDDSPMLRKICMATLRSLGVTTIDQCENGEEAVRTVQEGLTKDFTNPPYDYILMDCQMPVKDGFEATREIREMEKHYGLHISIIALSAEIDKLTTETGMDFHITKPIKKEHLLKAIAYIENSDIM*