AlfalfaGEDB | MsaG004191

M. sativa ssp. caerulea / MsaG004191

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564
PFAM: PF00512.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004191	AES61663.2	96.283	1103	36	4	7	1105	1	1102	0.0	2184

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004191	sp\|O22267\|CKI1_ARATH	37.892	1148	616	25	11	1101	12	1119	0.0	674

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004191	G7IDR2	96.283	1103	36	4	7	1105	1	1102	0.0	2184

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TFs/TRs:

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Gene ID	Type	Classification
MsaG004191	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG004191	0.835566	2.840856e-56	9.678707e-54
MsaG000032	MsaG004191	0.844437	1.415321e-58	6.366174e-56
MsaG000048	MsaG004191	0.880513	1.091366e-69	2.017841e-66
MsaG000069	MsaG004191	0.839064	3.650494e-57	1.384009e-54
MsaG000137	MsaG004191	0.877578	1.174573e-68	1.896213e-65
MsaG000202	MsaG004191	0.905865	6.462519e-80	4.694187e-76
MsaG000286	MsaG004191	0.877193	1.596906e-68	2.533141e-65
MsaG000350	MsaG004191	0.865427	1.191011e-64	1.144510e-61
MsaG000413	MsaG004191	0.838769	4.348579e-57	1.633482e-54
MsaG000416	MsaG004191	0.869487	6.056913e-66	6.869428e-63

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004191	MtrunA17_Chr1g0194741	96.472	652	20	2	1	649	1	652	0.0	1283
MsaG004191	MtrunA17_Chr1g0197591	61.706	1102	348	20	10	1096	3	1045	0.0	1223
MsaG004191	MtrunA17_Chr1g0194731	95.415	458	19	2	649	1105	1	457	0.0	833
MsaG004191	MtrunA17_Chr8g0371601	28.772	570	352	17	129	674	196	735	4.47e-43	171
MsaG004191	MtrunA17_Chr8g0371601	31.658	199	111	7	912	1087	957	1153	1.34e-16	85.5
MsaG004191	MtrunA17_Chr5g0405701	28.086	559	330	16	152	674	251	773	6.67e-42	167
MsaG004191	MtrunA17_Chr5g0405701	34.483	145	71	4	966	1087	1040	1183	3.42e-16	84.3
MsaG004191	MtrunA17_Chr8g0343551	73.239	71	19	0	1026	1096	12	82	1.72e-31	118
MsaG004191	MtrunA17_Chr8g0377481	31.429	315	177	10	383	679	381	674	3.43e-31	132
MsaG004191	MtrunA17_Chr8g0377481	32.609	138	69	6	973	1097	838	964	1.37e-13	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004191	AT2G47430.1	37.892	1148	616	25	11	1101	12	1119	0.0	674
MsaG004191	AT2G17820.1	33.159	383	232	10	296	674	400	762	1.22e-43	173
MsaG004191	AT2G17820.1	31.658	199	97	7	927	1096	1004	1192	3.40e-16	84.7
MsaG004191	AT1G27320.1	27.475	404	225	12	380	769	436	785	2.13e-30	130
MsaG004191	AT1G27320.1	29.221	154	75	5	973	1102	887	1030	1.13e-11	69.7
MsaG004191	AT2G01830.2	27.596	366	221	11	338	677	415	762	4.74e-28	123
MsaG004191	AT2G01830.2	37.037	135	67	4	973	1097	942	1068	7.50e-16	83.6
MsaG004191	AT2G01830.1	27.596	366	221	11	338	677	392	739	5.06e-28	123
MsaG004191	AT2G01830.1	37.037	135	67	4	973	1097	919	1045	7.36e-16	83.6
MsaG004191	AT2G01830.4	27.596	366	221	11	338	677	392	739	5.06e-28	123

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Find 202 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGGGAGATAAGAGAGA+TGG	0.610075	1:+66582115	MsaT004191.1:CDS
AACAATCTACTACCATGAAA+TGG	0.422179	1:-66581531	None:intergenic
AACACTCTTGTGGTTAGTCT+TGG	0.422431	1:-66579351	None:intergenic
AACATGGTGTCAATGAGGCA+AGG	0.632743	1:-66576610	None:intergenic
AACTACATCCTCAAGGAGAG+AGG	0.617424	1:-66579120	None:intergenic
AAGAGTTCCTTTCAAAGCTA+TGG	0.440702	1:+66581272	MsaT004191.1:CDS
AAGATTTCACAACACTCTTG+TGG	0.579252	1:-66579361	None:intergenic
AAGGCTCAGGCCTCTGAGAG+GGG	0.603713	1:-66581026	None:intergenic
AAGTGTGGAACAATGTTGGA+AGG	0.593740	1:+66581665	MsaT004191.1:CDS
AATACAAAATCCATAAGACA+TGG	0.641986	1:-66579455	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	66576357	66582295	66576357	ID=MsaG004191
Chr1	mRNA	66576357	66582295	66576357	ID=MsaT004191.1;Parent=MsaG004191
Chr1	exon	66576357	66576413	66576357	ID=MsaT004191.1.exon1;Parent=MsaT004191.1
Chr1	CDS	66576357	66576413	66576357	ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1	exon	66576590	66576826	66576590	ID=MsaT004191.1.exon2;Parent=MsaT004191.1
Chr1	CDS	66576590	66576826	66576590	ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1	exon	66577099	66577764	66577099	ID=MsaT004191.1.exon3;Parent=MsaT004191.1
Chr1	CDS	66577099	66577764	66577099	ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1	exon	66578458	66578863	66578458	ID=MsaT004191.1.exon4;Parent=MsaT004191.1
Chr1	CDS	66578458	66578863	66578458	ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1	exon	66579042	66579610	66579042	ID=MsaT004191.1.exon5;Parent=MsaT004191.1
Chr1	CDS	66579042	66579610	66579042	ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1	exon	66580799	66581974	66580799	ID=MsaT004191.1.exon6;Parent=MsaT004191.1
Chr1	CDS	66580799	66581974	66580799	ID=cds.MsaT004191.1;Parent=MsaT004191.1
Chr1	exon	66582089	66582295	66582089	ID=MsaT004191.1.exon7;Parent=MsaT004191.1
Chr1	CDS	66582089	66582295	66582089	ID=cds.MsaT004191.1;Parent=MsaT004191.1

Gene Sequence

>MsaT004191.1

ATGAATACTGGTTTATCAATGGCATTACTTCGACCTTCATCTTTCATGATCTTGCTGGCATATGGTGCACTAATAGTCCTTGCCTCATTGACACCATGTTGGTATCTCATGGTCACACATATTGAGAAAAGTGTGAATTTGCACTCAGCAAATATTGTGTCACAATTGCAATCAGAAATTGAGTACTCAGCTGAACTATTGCAACCAATGAAATCATCATCAACAAATTTATCTACATTATTGAGCTCAACCCTTAATTCTACTAATGTCACCTTCTCTGATGTTCACACCAAGGTGGCTCCGTTATTATTTCAAGCATTGAAGACAATTCCTCACTTGACACAAATCTCATACATAGGAATGGAAGGTCTTTTTTTCACACACTACAATGATGGTGATCAAGTTCTAGCAATGTACTCTAACTCATCTAGTGGGGGTGCTTCAAACAAAACTATATACTATATCCAACCTGTGAACCATGACACTGGAATGGTTTTTGGGGAAGCCATAATATCTAACAACACTATCAATATTGATGCAAGTTGGATAAATGGAACAAATAATATTTCACATGAATTTGCATCATTGGGAACAAAGTTGAATAATGTTAGTGATCTTTTGTTCATGAATTCAGCTAGAATCAACAGAATAGGAGGGGTCTCTCTTGGATTTTCGACGAAAGCAATAACCGATTATATCACTCGCATTGTCGATCGTCAAGGGACAAAATCATATTTGGCTACCAAAGATGGAAAAGTTATTGTAAAAGGAATTCAAAATATCCGTTTGATGATTTTTAATGATAGTGTTTCAATTCAAGCTGTTAATGGTAATGGAGATCTAATAAGGAATGAGGGAGCTGTATCTTGCAAGGATCAAGCTGTTGGTTCTAGTTTGAATATTCATGATACTCAATATTTGATTCATTGCTACCCCATTGATATTATGGGAATAGAATCGGTGCATGTGTTAGCTGTCCCACAAAATGGATCTCTCATCTTTAATCCAAGTCATAAAGAAAAGGGATTGACACTCTTGATTGTAATGATGATGATGATATTTATTGCTATCTTGAGTTTTCTATTCTTGAATGTTGGAGTGACAAAGAGAGAAATGCATTTGTGTGCATCACTCATACAACAAAAAGAAGCCACAGAACAAGCTGAGAGAAAGAATACCAATAAGAGTCTTGCTTTTGCTACTGCTAGCCATGATCTTCGTGCTTATCTTGCAGGCCTTATTGGTTTGATTGAAATGTCCTCTAAATTAGTTGTTACTAATTCAAAATTGGACACCAATTTGAAACCAAGTTCAGAATTGGAGACCAACTTAAAACAAATGGATAATTGTGCCCAAGATTTGCTAGGACTGTTGAATTCTATACTTGACACAAGCAAGATTGAGGCAGGAAAAATGCAACTAGAGGAAGAGGAATTTGATTTATCCTCTCTCCTTGAGGATGTAGTTGATTTGTACCATCCAATGGCAATGAAGAAAGGTGTAGAAGTTGTATTGGACTCTTGTAATGGCTCAGTGATCAAACATTCACGTGTGAAAGGTGATAGGAGAAAATTGAAGCAAGTTTTGTGTAACTTGCTTAGCAATGCTGTTAAATTTACTGATGAAGGGCACATAACAGTTAGAGCATGGACTCAGAAGGCCAAATTGCAAAAATCCAAGACTAACCACAAGAGTGTTGTGAAATCTTTGTCTTGGTTGTTTAATAAGAAAGACAAAGAATGTGAAGACATAGAAGCTGTGAATTTAGCCCAACAAGATCCATGTCTTATGGATTTTGTATTTGAAGTGGATGATACAGGGAAAGGTATTCCTAAAGAGAATCACAAGTCAGTGTTTGAGAATTATGTTCAAGTTAAAGAGAATTCTGTTGGCCAAGTAGGAACTGGCTTGGGACTTGGGATTGTGCAGTCATTGGTACGTTTGATGCATGGAGACATTGGTATTGTGGACAAGGAAGTTGGCAAAAGAGGAACATGCTTCAAGTTCAATGTGCTTCTCACCTTATGTGAGAATGAGACAGTGAATTATGAGTATGGATCAACCTCAGGTGACAAAAACCAAACCCTAGAGAAAAAATTAACAATTCGTACTGCTAGTTCTGGTTCAAGCATTTGTTCTTTGAGTCCAAAACTCCATGTTAGCCCCTCTCAGAGGCCTGAGCCTTCACATGTCATTCTTTACATTACTGATGAGGAAAGAAGAAGAACTTCGCAGTTGTTCATAGAGAGCTTAGGGATTAAAGTCAAGGTTGTGAAGAGTAGAAATCATCTAATTCATACTCTCAAGAAGATCAAAAAAGAAAAGGGTGACGATATCAGTGATCAAAGTTCACCGGAGTCTTCGGAGATGAGTTCTAGGTGTACATCTTATAACTCTTCTTGTAGTAGAAGAGTTCCTTTCAAAGCTATGGATCATGGAAATGAATATCTATCTTCAATGTTCAAGAAGAAAAACAATGGAGCTGCACCAAGTTTTGTTTTGATTATCATTGATGCAAATGCAGGACCATTTTCTAAGCTTTGTAAGATTGTGTCAAACTTCAAGAAAGATCTTCTCAATCCTAGTAAAGTTGTTTGGTTGGAAAAGCCTTTTGAGAGTAGTGTTGATTACCAAGCAATTGATCAAGATGATATTGTGATATCAAAACCATTTCATGGTAGTAGATTGTTCCAAGTCATTAGGCTTCTTCCTGAGTTCGGTGGTAATTGGATAAGCAATTCTAGTAAACCAAGAAATGAACCTAGATCACAAGTACCTTCCAATGATGAAAGTGTGTGTCTAAGTGTGGAACAATGTTGGAAGGGAACACAAAAGTCCTATGTTAATCTGGGAAGAAAAGGTTCTGTTCATCAAGGTGAAATAGAAGAAAGTGGAGAATCAAGCAATCCTAAACCATTAAGTGGAAAGAAGTTTTTGGTTGTTGATGATAGTCCTATGCTGAGAAAGATTTGTATGGCTACTTTGAGATCTCTTGGTGTGACTACTATTGACCAATGTGAGAATGGTGAAGAGGCTGTGAGAACTGTTCAAGAGGGTTTAACCAAGGATTTTACTAATCCTCCTTATGATTATATCTTAATGGATTGTCAGATGCCAGTGAAGGATGGGTTTGAGGCAACAAGGGAGATAAGAGAGATGGAGAAACACTATGGTCTTCACATTTCTATCATTGCATTATCTGCTGAAATTGACAAGCTGACCACTGAGACTGGAATGGATTTCCACATTACCAAACCTATCAAGAAAGAGCATTTACTCAAAGCTATTGCGTACATAGAAAATAGTGACATAATGTAA

Protein sequence

>MsaT004191.1

MNTGLSMALLRPSSFMILLAYGALIVLASLTPCWYLMVTHIEKSVNLHSANIVSQLQSEIEYSAELLQPMKSSSTNLSTLLSSTLNSTNVTFSDVHTKVAPLLFQALKTIPHLTQISYIGMEGLFFTHYNDGDQVLAMYSNSSSGGASNKTIYYIQPVNHDTGMVFGEAIISNNTINIDASWINGTNNISHEFASLGTKLNNVSDLLFMNSARINRIGGVSLGFSTKAITDYITRIVDRQGTKSYLATKDGKVIVKGIQNIRLMIFNDSVSIQAVNGNGDLIRNEGAVSCKDQAVGSSLNIHDTQYLIHCYPIDIMGIESVHVLAVPQNGSLIFNPSHKEKGLTLLIVMMMMIFIAILSFLFLNVGVTKREMHLCASLIQQKEATEQAERKNTNKSLAFATASHDLRAYLAGLIGLIEMSSKLVVTNSKLDTNLKPSSELETNLKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSSLLEDVVDLYHPMAMKKGVEVVLDSCNGSVIKHSRVKGDRRKLKQVLCNLLSNAVKFTDEGHITVRAWTQKAKLQKSKTNHKSVVKSLSWLFNKKDKECEDIEAVNLAQQDPCLMDFVFEVDDTGKGIPKENHKSVFENYVQVKENSVGQVGTGLGLGIVQSLVRLMHGDIGIVDKEVGKRGTCFKFNVLLTLCENETVNYEYGSTSGDKNQTLEKKLTIRTASSGSSICSLSPKLHVSPSQRPEPSHVILYITDEERRRTSQLFIESLGIKVKVVKSRNHLIHTLKKIKKEKGDDISDQSSPESSEMSSRCTSYNSSCSRRVPFKAMDHGNEYLSSMFKKKNNGAAPSFVLIIIDANAGPFSKLCKIVSNFKKDLLNPSKVVWLEKPFESSVDYQAIDQDDIVISKPFHGSRLFQVIRLLPEFGGNWISNSSKPRNEPRSQVPSNDESVCLSVEQCWKGTQKSYVNLGRKGSVHQGEIEESGESSNPKPLSGKKFLVVDDSPMLRKICMATLRSLGVTTIDQCENGEEAVRTVQEGLTKDFTNPPYDYILMDCQMPVKDGFEATREIREMEKHYGLHISIIALSAEIDKLTTETGMDFHITKPIKKEHLLKAIAYIENSDIM*