AlfalfaGEDB | MsaG004237

M. sativa ssp. caerulea / MsaG004237

KEGG: K13436
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004237	AES61573.1	99.723	361	1	0	1	361	116	476	0.0	751

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004237	sp\|O80719\|Y2706_ARATH	83.702	362	55	3	1	358	1	362	0.0	595

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004237	G7IBS1	99.723	361	1	0	1	361	116	476	0.0	751

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004237	MtrunA17_Chr1g0194101	99.723	361	1	0	1	361	1	361	0.0	747
MsaG004237	MtrunA17_Chr4g0069241	72.571	350	95	1	1	350	1	349	0.0	524
MsaG004237	MtrunA17_Chr1g0213501	80.064	311	59	2	51	359	94	403	6.12e-177	497
MsaG004237	MtrunA17_Chr7g0258951	69.254	335	97	3	30	361	36	367	1.22e-158	449
MsaG004237	MtrunA17_Chr1g0175731	69.649	313	90	2	48	355	56	368	4.83e-154	437
MsaG004237	MtrunA17_Chr3g0084191	61.709	316	98	4	47	359	205	500	1.16e-123	365
MsaG004237	MtrunA17_Chr0c20g0493811	66.802	247	41	2	113	350	29	243	1.07e-111	326
MsaG004237	MtrunA17_Chr7g0270121	49.834	301	142	4	50	346	361	656	1.09e-90	287
MsaG004237	MtrunA17_Chr1g0194541	48.113	318	154	5	50	361	272	584	1.54e-90	284
MsaG004237	MtrunA17_Chr7g0262521	50.000	298	140	4	52	346	329	620	5.31e-90	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG004237	AT3G62220.1	83.611	360	59	0	1	360	1	360	605
MsaG004237	AT3G62220.3	83.611	360	59	0	1	360	1	360	605
MsaG004237	AT2G47060.4	76.904	394	55	4	1	358	1	394	601
MsaG004237	AT2G47060.2	83.702	362	55	3	1	358	1	362	595
MsaG004237	AT2G47060.1	83.702	362	55	3	1	358	1	362	595
MsaG004237	AT1G48210.1	75.000	356	87	2	1	355	1	355	557
MsaG004237	AT1G48210.7	75.000	356	87	2	1	355	1	355	557
MsaG004237	AT1G48210.2	75.000	356	87	2	1	355	1	355	557
MsaG004237	AT1G48210.3	75.000	356	87	2	1	355	1	355	557
MsaG004237	AT3G17410.2	78.674	347	72	2	10	355	11	356	545

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Find 82 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTATACAGTTT+TGG	0.393450	1:-67213620	MsaT004237.1:CDS
AAACTCATAAGCAAGAATAC+GGG	0.634002	1:+67214477	None:intergenic
AAAGAAGTTACGGATAACTT+TGG	0.441223	1:-67214788	MsaT004237.1:CDS
AAAGGTTCCAAGGACACGGG+TGG	0.638801	1:+67213949	None:intergenic
AACACCTTGGCAACAGCTTT+TGG	0.309071	1:+67213304	None:intergenic
AACCAAAGGTTCCAAGGACA+CGG	0.555158	1:+67213945	None:intergenic
AACTCAGTGAGGATAAAGTC+AGG	0.563530	1:-67213363	MsaT004237.1:CDS
ACAAGATTCTCTTATTGGAG+AGG	0.607728	1:-67214765	MsaT004237.1:CDS
ACAGCAGAGTCTGGTTACTT+GGG	0.607143	1:-67213537	MsaT004237.1:intron
ACAGCCTGATGAGGAATTCT+TGG	0.370002	1:-67214666	MsaT004237.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	67212743	67215217	67212743	ID=MsaG004237
Chr1	mRNA	67212743	67215217	67212743	ID=MsaT004237.1;Parent=MsaG004237
Chr1	exon	67212743	67212871	67212743	ID=MsaT004237.1.exon7;Parent=MsaT004237.1
Chr1	CDS	67212743	67212871	67212743	ID=cds.MsaT004237.1;Parent=MsaT004237.1
Chr1	exon	67213309	67213395	67213309	ID=MsaT004237.1.exon6;Parent=MsaT004237.1
Chr1	CDS	67213309	67213395	67213309	ID=cds.MsaT004237.1;Parent=MsaT004237.1
Chr1	exon	67213538	67213670	67213538	ID=MsaT004237.1.exon5;Parent=MsaT004237.1
Chr1	CDS	67213538	67213670	67213538	ID=cds.MsaT004237.1;Parent=MsaT004237.1
Chr1	exon	67213932	67214205	67213932	ID=MsaT004237.1.exon4;Parent=MsaT004237.1
Chr1	CDS	67213932	67214205	67213932	ID=cds.MsaT004237.1;Parent=MsaT004237.1
Chr1	exon	67214443	67214569	67214443	ID=MsaT004237.1.exon3;Parent=MsaT004237.1
Chr1	CDS	67214443	67214569	67214443	ID=cds.MsaT004237.1;Parent=MsaT004237.1
Chr1	exon	67214661	67214911	67214661	ID=MsaT004237.1.exon2;Parent=MsaT004237.1
Chr1	CDS	67214661	67214911	67214661	ID=cds.MsaT004237.1;Parent=MsaT004237.1
Chr1	exon	67215133	67215217	67215133	ID=MsaT004237.1.exon1;Parent=MsaT004237.1
Chr1	CDS	67215133	67215217	67215133	ID=cds.MsaT004237.1;Parent=MsaT004237.1

Gene Sequence

>MsaT004237.1

ATGAGTTGTTTTGGCTGTTGCGAAGAGGATGAGTTTCACAAGGCTGCTGAAAGTGGTGGACCATATGTTGTAAAAAACCCAGCAGGGAATGATGGAAATTATCATGCTTCTGAGACTGCAAAGCAGGGAGCTCAGACTGTTAAAGTGCAACCCATTGAAGTTCCTGAGATACAGGCAGATGAACTAAAAGAAGTTACGGATAACTTTGGACAAGATTCTCTTATTGGAGAGGGATCCTATGGAAGAGTATATTACGGAGTTCTTAAAAGTGGGCAGGCTGCAGCAATCAAGAAGTTAGATGCCAGCAAACAGCCTGATGAGGAATTCTTGGCCCAGGTTTCAATGGTATCAAGGCTAAAACACGATAATTTTGTCCAATTGCTTGGATACTGCGTTGATGGAAACTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGACATTTTACATGGCAGAAAAGGAGTTAAAGGAGCTCAGCCTGGTCCAGTTTTGACATGGGCACAGAGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCATATTATCCACCGGGACATCAAGTCAAGCAATGTGCTAATCTTTGACGATGATGTTGCAAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCAGACATGGCTGCTCGTCTTCATTCCACCCGTGTCCTTGGAACCTTTGGTTACCATGCACCTGAATATGCAATGACCGGACAGTTGAATGCTAAAAGTGATGTATACAGTTTTGGTGTTGTCCTTCTAGAACTTTTGACTGGAAGAAAACCTGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCAAAAGCTGTTGCCAAGATGGCTGCTGTTGCTGCATTGTGTGTGCAATATGAAGCTGATTTCAGACCTAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGACTGCCCGAGCTGGACCTGCTGGTGAAACAGCTAATTAA

Protein sequence

>MsaT004237.1

MSCFGCCEEDEFHKAAESGGPYVVKNPAGNDGNYHASETAKQGAQTVKVQPIEVPEIQADELKEVTDNFGQDSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARAGPAGETAN*