AlfalfaGEDB | MsaG004245

M. sativa ssp. caerulea / MsaG004245

KEGG: K14803
GO: -
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	XP_003591335.1	90.256	390	8	1	1	360	1	390	0.0	706

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	sp\|Q3EAF9\|P2C49_ARATH	55.357	392	131	8	1	356	1	384	7.85e-141	407

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	G7IBT6	90.256	390	8	1	1	360	1	390	0.0	706

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TFs/TRs:

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Gene ID	Type	Classification
MsaG004245	TF	DBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000842	MsaG004245	0.823666	2.164972e-53	5.251985e-51
MsaG001246	MsaG004245	0.811122	1.405302e-50	2.466445e-48
MsaG002209	MsaG004245	0.857059	4.108550e-62	2.860729e-59
MsaG002405	MsaG004245	0.831242	3.363837e-55	1.008774e-52
MsaG002484	MsaG004245	0.829076	1.129441e-54	3.183360e-52
MsaG003292	MsaG004245	0.834703	4.679887e-56	1.553768e-53
MsaG003740	MsaG004245	0.814074	3.200474e-51	6.044279e-49
MsaG003743	MsaG004245	0.815758	1.359973e-51	2.679809e-49
MsaG003769	MsaG004245	0.808883	4.240967e-50	7.050070e-48
MsaG003938	MsaG004245	0.806582	1.300920e-49	2.046901e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	MtrunA17_Chr1g0194191	90.256	390	8	1	1	360	1	390	0.0	706
MsaG004245	MtrunA17_Chr2g0293811	50.388	387	143	4	1	357	1	368	8.57e-127	368
MsaG004245	MtrunA17_Chr5g0407161	44.969	318	123	4	73	356	79	378	2.44e-89	273
MsaG004245	MtrunA17_Chr4g0065141	42.216	334	135	6	62	355	68	383	3.20e-81	253
MsaG004245	MtrunA17_Chr3g0144111	45.333	300	87	5	92	355	1	259	3.98e-81	248
MsaG004245	MtrunA17_Chr3g0138281	41.691	343	143	7	50	355	55	377	1.07e-75	238
MsaG004245	MtrunA17_Chr4g0068971	50.625	160	48	2	228	357	110	268	6.62e-44	152
MsaG004245	MtrunA17_Chr4g0068971	37.815	119	63	3	1	116	1	111	9.89e-15	73.6
MsaG004245	MtrunA17_Chr1g0150451	31.481	270	133	7	87	327	85	331	1.25e-35	132
MsaG004245	MtrunA17_Chr3g0136711	30.686	277	139	8	87	334	42	294	6.21e-34	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	AT3G62260.1	55.357	392	130	8	1	356	1	383	3.92e-142	408
MsaG004245	AT3G62260.2	55.357	392	131	8	1	356	1	384	7.98e-142	407
MsaG004245	AT3G62260.3	60.473	296	84	2	92	356	1	294	7.52e-126	363
MsaG004245	AT1G48040.1	53.299	394	128	11	1	356	7	382	2.02e-123	360
MsaG004245	AT3G17250.1	50.275	364	131	9	34	356	68	422	1.89e-112	334
MsaG004245	AT2G33700.1	47.649	319	114	4	73	356	78	378	4.84e-95	288
MsaG004245	AT3G51470.2	43.810	315	120	5	74	354	23	314	1.35e-85	262
MsaG004245	AT3G51470.1	43.810	315	120	5	74	354	67	358	2.90e-85	263
MsaG004245	AT2G25620.1	41.159	345	144	7	53	356	63	389	1.65e-78	246
MsaG004245	AT2G25620.2	41.159	345	144	7	53	356	63	389	1.65e-78	246

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Find 94 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACCGGAACGGATGG+AGG	0.545279	1:+67271563	None:intergenic
AAAATTGGGTGGCTATGTTG+AGG	0.666115	1:-67270627	MsaT004245.1:CDS
AAACTACCGGAACGGATGGA+GGG	0.556241	1:+67271564	None:intergenic
AAAGCTCATTACCCCATAAA+AGG	0.322934	1:+67271440	None:intergenic
AAATCCCTGGCGCACTTCTC+TGG	0.265688	1:+67270379	None:intergenic
AACTACCGGAACGGATGGAG+GGG	0.553531	1:+67271565	None:intergenic
AATCCCTGGCGCACTTCTCT+GGG	0.496285	1:+67270380	None:intergenic
ACAGATATAACCTCGGAAGC+TGG	0.566543	1:-67271615	MsaT004245.1:CDS
ACAGCATCTCAATTTCCGTT+GGG	0.444872	1:+67270255	None:intergenic
ACATGGAAGATGAACATATA+AGG	0.401510	1:-67271518	MsaT004245.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	67270192	67272692	67270192	ID=MsaG004245
Chr1	mRNA	67270192	67272692	67270192	ID=MsaT004245.1;Parent=MsaG004245
Chr1	exon	67270192	67270535	67270192	ID=MsaT004245.1.exon5;Parent=MsaT004245.1
Chr1	CDS	67270192	67270535	67270192	ID=cds.MsaT004245.1;Parent=MsaT004245.1
Chr1	exon	67270624	67270766	67270624	ID=MsaT004245.1.exon4;Parent=MsaT004245.1
Chr1	CDS	67270624	67270766	67270624	ID=cds.MsaT004245.1;Parent=MsaT004245.1
Chr1	exon	67271136	67271371	67271136	ID=MsaT004245.1.exon3;Parent=MsaT004245.1
Chr1	CDS	67271136	67271371	67271136	ID=cds.MsaT004245.1;Parent=MsaT004245.1
Chr1	exon	67271452	67271649	67271452	ID=MsaT004245.1.exon2;Parent=MsaT004245.1
Chr1	CDS	67271452	67271649	67271452	ID=cds.MsaT004245.1;Parent=MsaT004245.1
Chr1	exon	67272531	67272692	67272531	ID=MsaT004245.1.exon1;Parent=MsaT004245.1
Chr1	CDS	67272531	67272692	67272531	ID=cds.MsaT004245.1;Parent=MsaT004245.1

Gene Sequence

>MsaT004245.1

ATGGTGGCTGAAGCAGAGGTTGTTGTGTGTCAACAAAGCGTGGATGTGAAGTATTTTCCGAATAAAGGAAGCAATAATCACGAGATCGGTGATGTAGATTCGAATTTTGATCGAGTTCGTGTTTCTGAATCAGTTTCTGCTGAGTTACTTACTACAAAAGAAGATGTTAAGACTACAGATATAACCTCGGAAGCTGGTCTTGAATCTGCGGTTCTGCAATTTGTCCCCTCCATCCGTTCCGGTAGTTTTGCCGACATTGGGCCACGTAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCATCTGGGATCACAATACAATTTTCCTAAACCAAGTGCCTTTTATGGGGTATTTGATGGTCACGGAGGACCTGAAGCTGCAGCGTATATAAGAAAAAATGTTCTAAAATTCTTCTTTGAGGATGTCAATTTCCCTCAGATATCTGAAGTTGATAATGTATTTTTACAAGAGGTAGAGAATTCCCTTAGAAAGGCTTTTCTTTTGGCAGACTCAGCTTTGGCTGATGATAGCAATGTGAACACTTCATCAGGGACCACAGCTCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCAAATGCCGGTGACTGCCGAGCAGTTCTCAGTCGTAAAGGAGAGGCCATTGACATGTCTCAAGATCATAGGCCTATTTATCCATCAGAGCGGAGGCGAGTTGAAAAATTGGGTGGCTATGTTGAGGATGATCCTGAGTTCCACCAAGTGGTTCTAACAGAGGATGACGAATTCCTCATCATAGGATGCGACGGCATCTGGGATGTGATGACAAGTCAGCATGCTGTTAGCCTTGTTCGTAAAGGTTTGAGGAGGCATGATGACCCAGAGAAGTGCGCCAGGGATTTAGTTATGGAGGCATTACGGCTCAACACATTTGACAATCTTACAGTGATCATCATATGCCTCTCCTCCCTTGACCATGGGGAGTCAGAGCCATCACCACCTCCCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAGCTTGTTGGAAGGCAATGCTAGCAACTGA

Protein sequence

>MsaT004245.1

MVAEAEVVVCQQSVDVKYFPNKGSNNHEIGDVDSNFDRVRVSESVSAELLTTKEDVKTTDITSEAGLESAVLQFVPSIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSQYNFPKPSAFYGVFDGHGGPEAAAYIRKNVLKFFFEDVNFPQISEVDNVFLQEVENSLRKAFLLADSALADDSNVNTSSGTTALTALIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPSERRRVEKLGGYVEDDPEFHQVVLTEDDEFLIIGCDGIWDVMTSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIICLSSLDHGESEPSPPPQRKLRCCSLSAEALCSLRSLLEGNASN*