AlfalfaGEDB | MsaG004245

M. sativa ssp. caerulea / MsaG004245

KEGG: K14803
GO: -
PFAM: PF00481.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	XP_003591335.1	90.256	390	8	1	1	360	1	390	0.0	706

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	sp\|Q3EAF9\|P2C49_ARATH	55.357	392	131	8	1	356	1	384	7.85e-141	407

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	G7IBT6	90.256	390	8	1	1	360	1	390	0.0	706

TFs/TRs:

Gene ID	Type	Classification
MsaG004245	TF	DBP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000842	MsaG004245	0.823666	2.164972e-53	5.251985e-51
MsaG001246	MsaG004245	0.811122	1.405302e-50	2.466445e-48
MsaG002209	MsaG004245	0.857059	4.108550e-62	2.860729e-59
MsaG002405	MsaG004245	0.831242	3.363837e-55	1.008774e-52
MsaG002484	MsaG004245	0.829076	1.129441e-54	3.183360e-52
MsaG003292	MsaG004245	0.834703	4.679887e-56	1.553768e-53
MsaG003743	MsaG004245	0.815758	1.359973e-51	2.679809e-49
MsaG003740	MsaG004245	0.814074	3.200474e-51	6.044279e-49
MsaG003769	MsaG004245	0.808883	4.240967e-50	7.050070e-48
MsaG003938	MsaG004245	0.806582	1.300920e-49	2.046901e-47
MsaG004111	MsaG004245	0.812381	7.498789e-51	1.357547e-48
MsaG004199	MsaG004245	0.803523	5.635333e-49	8.256069e-47
MsaG004245	MsaG004465	0.805984	1.736270e-49	2.693356e-47
MsaG004245	MsaG004510	0.817725	4.948128e-52	1.025457e-49
MsaG004245	MsaG004805	0.839027	3.732245e-57	1.413317e-54
MsaG004245	MsaG005455	0.807540	8.174176e-50	1.315584e-47
MsaG004245	MsaG005524	0.833457	9.569883e-56	3.061857e-53
MsaG004245	MsaG005664	0.812732	6.288464e-51	1.148399e-48
MsaG004245	MsaG005850	0.838118	6.388049e-57	2.351406e-54
MsaG004245	MsaG005928	0.817442	5.727803e-52	1.178479e-49
MsaG004245	MsaG006140	0.803790	4.963958e-49	7.317408e-47
MsaG004245	MsaG006325	0.800496	2.346040e-48	3.207646e-46
MsaG004245	MsaG006586	0.813898	3.498339e-51	6.577901e-49
MsaG004245	MsaG006552	0.827886	2.181839e-54	5.947601e-52
MsaG004245	MsaG006701	0.810761	1.680387e-50	2.923384e-48
MsaG004245	MsaG006813	0.810814	1.637312e-50	2.852095e-48
MsaG004245	MsaG007525	0.821031	8.796929e-53	1.988381e-50
MsaG004245	MsaG008168	0.801972	1.173735e-48	1.659379e-46
MsaG004245	MsaG009772	0.821527	6.771557e-53	1.550716e-50
MsaG004245	MsaG010631	0.844478	1.380669e-58	6.218360e-56
MsaG004245	MsaG010703	0.853450	4.558279e-61	2.786508e-58
MsaG004245	MsaG011587	0.817213	6.444089e-52	1.318098e-49
MsaG004245	MsaG011657	0.822400	4.258523e-53	9.982468e-51
MsaG004245	MsaG011702	0.821039	8.764041e-53	1.981296e-50
MsaG004245	MsaG011918	0.812928	5.700890e-51	1.046192e-48
MsaG004245	MsaG012461	0.818069	4.140333e-52	8.657308e-50
MsaG004245	MsaG012521	0.829946	6.956875e-55	2.010322e-52
MsaG004245	MsaG012747	0.812279	7.892234e-51	1.425091e-48
MsaG004245	MsaG012982	0.808420	5.321614e-50	8.747968e-48
MsaG004245	MsaG013426	0.816585	8.903045e-52	1.791749e-49
MsaG004245	MsaG013895	0.807154	9.859241e-50	1.572277e-47
MsaG004245	MsaG015096	0.814285	2.876407e-51	5.461190e-49
MsaG004245	MsaG015329	0.817947	4.410583e-52	9.193425e-50
MsaG004245	MsaG015833	0.810978	1.509499e-50	2.639999e-48
MsaG004245	MsaG016390	0.842851	3.741871e-58	1.599072e-55
MsaG004245	MsaG016827	0.811630	1.091205e-50	1.939189e-48
MsaG004245	MsaG016906	0.827970	2.083401e-54	5.692575e-52
MsaG004245	MsaG016972	0.800791	2.043792e-48	2.813169e-46
MsaG004245	MsaG017085	0.808938	4.128118e-50	6.871450e-48
MsaG004245	MsaG017467	0.818099	4.076608e-52	8.530583e-50
MsaG004245	MsaG018806	0.805981	1.738489e-49	2.696639e-47
MsaG004245	MsaG018847	0.800176	2.723000e-48	3.696214e-46
MsaG004245	MsaG018919	0.827266	3.068833e-54	8.221158e-52
MsaG004245	MsaG018922	0.827605	2.547849e-54	6.890587e-52
MsaG004245	MsaG019501	0.835215	3.482906e-56	1.174112e-53
MsaG004245	MsaG019629	0.834274	5.989317e-56	1.963086e-53
MsaG004245	MsaG020191	0.802633	8.594775e-49	1.233615e-46
MsaG004245	MsaG020206	0.802044	1.134843e-48	1.606992e-46
MsaG004245	MsaG020365	0.815608	1.467827e-51	2.881509e-49
MsaG004245	MsaG020578	0.801262	1.638873e-48	2.279845e-46
MsaG004245	MsaG021001	0.816735	8.242735e-52	1.665260e-49
MsaG004245	MsaG022216	0.811926	9.413486e-51	1.685164e-48
MsaG004245	MsaG022478	0.811257	1.313841e-50	2.313593e-48
MsaG004245	MsaG022584	0.828083	1.958035e-54	5.366819e-52
MsaG004245	MsaG023177	0.813735	3.797849e-51	7.111808e-49
MsaG004245	MsaG024150	0.813090	5.254632e-51	9.682174e-49
MsaG004245	MsaG024152	0.815020	1.980135e-51	3.829709e-49
MsaG004245	MsaG025160	0.843451	2.593369e-58	1.129824e-55
MsaG004245	MsaG025404	0.823424	2.464845e-53	5.940072e-51
MsaG004245	MsaG026649	0.813763	3.743475e-51	7.015077e-49
MsaG004245	MsaG026770	0.844550	1.320051e-58	5.959671e-56
MsaG004245	MsaG027033	0.806335	1.465574e-49	2.292549e-47
MsaG004245	MsaG027630	0.804786	3.086480e-49	4.656101e-47
MsaG004245	MsaG027773	0.803757	5.042991e-49	7.428306e-47
MsaG004245	MsaG028553	0.827388	2.870963e-54	7.717386e-52
MsaG004245	MsaG028607	0.817801	4.755829e-52	9.875706e-50
MsaG004245	MsaG028787	0.815454	1.588190e-51	3.105592e-49
MsaG004245	MsaG028801	0.811132	1.398185e-50	2.454533e-48
MsaG004245	MsaG028813	0.811553	1.133685e-50	2.010907e-48
MsaG004245	MsaG028830	0.842476	4.699719e-58	1.984575e-55
MsaG004245	MsaG028985	0.804989	2.801034e-49	4.245401e-47
MsaG004245	MsaG029443	0.821373	7.343677e-53	1.674893e-50
MsaG004245	MsaG031612	0.805505	2.186511e-49	3.353868e-47
MsaG004245	MsaG031750	0.816174	1.098857e-51	2.188413e-49
MsaG004245	MsaG033966	0.826880	3.793490e-54	1.005321e-51
MsaG004245	MsaG034436	0.836475	1.674460e-56	5.862763e-54
MsaG004245	MsaG034949	0.815170	1.835137e-51	3.562682e-49
MsaG004245	MsaG035120	0.843571	2.409717e-58	1.053856e-55
MsaG004245	MsaG035147	0.805428	2.268545e-49	3.473520e-47
MsaG004245	MsaG035275	0.806703	1.226442e-49	1.935235e-47
MsaG004245	MsaG035554	0.814559	2.502696e-51	4.784323e-49
MsaG004245	MsaG036111	0.809244	3.553605e-50	5.958504e-48
MsaG004245	MsaG036130	0.803214	6.526848e-49	9.493984e-47
MsaG004245	MsaG036131	0.805253	2.467425e-49	3.762753e-47
MsaG004245	MsaG038022	0.830149	6.210212e-55	1.804984e-52
MsaG004245	MsaG039176	0.829486	8.991113e-55	2.564146e-52
MsaG004245	MsaG040366	0.803047	7.065760e-49	1.023820e-46
MsaG004245	MsaG040696	0.802169	1.069821e-48	1.519252e-46
MsaG004245	MsaG040835	0.806751	1.198261e-49	1.892907e-47
MsaG004245	MsaG043344	0.833853	7.629730e-56	2.469457e-53
MsaG004245	MsaG043767	0.800026	2.920783e-48	3.951470e-46
MsaG004245	MsaG044025	0.820831	9.780313e-53	2.198742e-50
MsaG004245	MsaG044793	0.801296	1.613227e-48	2.245938e-46
MsaG004245	MsaG045111	0.805048	2.722837e-49	4.132684e-47
MsaG004245	MsaG045309	0.836131	2.046690e-56	7.092292e-54
MsaG004245	MsaG045261	0.858835	1.227060e-62	9.128098e-60
MsaG004245	MsaG045550	0.820873	9.562287e-53	2.152218e-50
MsaG004245	MsaG045766	0.826040	6.000871e-54	1.553637e-51
MsaG004245	MsaG045883	0.809087	3.838649e-50	6.412486e-48
MsaG004245	MsaG046223	0.807974	6.615664e-50	1.075952e-47
MsaG004245	MsaG046532	0.835386	3.154404e-56	1.068870e-53
MsaG004245	MsaG046425	0.801711	1.327606e-48	1.865780e-46
MsaG004245	MsaG046491	0.810514	1.899872e-50	3.285334e-48
MsaG004245	MsaG046732	0.819393	2.079707e-52	4.501344e-50
MsaG004245	MsaG001553	0.812794	6.097961e-51	1.115311e-48
MsaG004245	MsaG001996	0.846421	4.132814e-59	1.984798e-56
MsaG004245	MsaG004869	0.826777	4.012741e-54	1.060357e-51
MsaG004245	MsaG001683	0.833408	9.842710e-56	3.144625e-53
MsaG004245	MsaG011523	0.816202	1.083349e-51	2.159030e-49
MsaG004245	MsaG013255	0.801393	1.541054e-48	2.150212e-46
MsaG004245	MsaG019334	0.839070	3.637247e-57	1.379215e-54
MsaG004245	MsaG022732	0.815922	1.250075e-51	2.473648e-49
MsaG004245	MsaG026416	0.811438	1.200488e-50	2.123389e-48
MsaG004245	MsaG025840	0.836479	1.670721e-56	5.850361e-54
MsaG004245	MsaG027119	0.840476	1.572098e-57	6.229554e-55
MsaG004245	MsaG034393	0.849280	6.796377e-60	3.594093e-57
MsaG004245	MsaG032019	0.809895	2.578669e-50	4.392511e-48
MsaG004245	MsaG031111	0.802939	7.434212e-49	1.074550e-46
MsaG004245	MsaG030868	0.826967	3.615553e-54	9.605079e-52
MsaG004245	MsaG036262	0.822156	4.848609e-53	1.129152e-50
MsaG004245	MsaG037255	0.824661	1.267529e-53	3.159005e-51
MsaG004245	MsaG036465	0.804742	3.151725e-49	4.749725e-47
MsaG004245	MsaG042389	0.801649	1.366508e-48	1.917768e-46
MsaG004245	MsaG043311	0.814594	2.459294e-51	4.705402e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	MtrunA17_Chr1g0194191	90.256	390	8	1	1	360	1	390	0.0	706
MsaG004245	MtrunA17_Chr2g0293811	50.388	387	143	4	1	357	1	368	8.57e-127	368
MsaG004245	MtrunA17_Chr5g0407161	44.969	318	123	4	73	356	79	378	2.44e-89	273
MsaG004245	MtrunA17_Chr4g0065141	42.216	334	135	6	62	355	68	383	3.20e-81	253
MsaG004245	MtrunA17_Chr3g0144111	45.333	300	87	5	92	355	1	259	3.98e-81	248
MsaG004245	MtrunA17_Chr3g0138281	41.691	343	143	7	50	355	55	377	1.07e-75	238
MsaG004245	MtrunA17_Chr4g0068971	50.625	160	48	2	228	357	110	268	6.62e-44	152
MsaG004245	MtrunA17_Chr4g0068971	37.815	119	63	3	1	116	1	111	9.89e-15	73.6
MsaG004245	MtrunA17_Chr1g0150451	31.481	270	133	7	87	327	85	331	1.25e-35	132
MsaG004245	MtrunA17_Chr3g0136711	30.686	277	139	8	87	334	42	294	6.21e-34	127
MsaG004245	MtrunA17_Chr5g0426141	31.197	234	115	5	114	317	62	279	2.10e-30	117
MsaG004245	MtrunA17_Chr1g0212961	32.018	228	111	6	117	317	125	335	7.47e-29	114
MsaG004245	MtrunA17_Chr3g0115851	32.051	234	113	6	114	317	62	279	9.17e-29	112
MsaG004245	MtrunA17_Chr1g0171571	29.003	331	163	11	41	326	348	651	5.22e-28	115
MsaG004245	MtrunA17_Chr5g0430481	29.588	267	139	7	83	319	127	374	2.10e-27	111
MsaG004245	MtrunA17_Chr2g0279151	31.169	231	113	5	117	317	64	278	5.18e-27	108
MsaG004245	MtrunA17_Chr4g0050381	31.602	231	112	6	117	317	60	274	5.24e-27	108
MsaG004245	MtrunA17_Chr1g0158781	29.830	352	185	11	10	319	48	379	4.52e-26	107
MsaG004245	MtrunA17_Chr6g0483411	28.322	286	151	8	78	319	43	318	2.68e-25	104
MsaG004245	MtrunA17_Chr3g0105371	30.189	265	132	8	87	319	95	338	4.01e-25	104
MsaG004245	MtrunA17_Chr1g0150781	29.137	278	133	7	113	338	285	550	6.80e-25	105
MsaG004245	MtrunA17_Chr3g0105351	28.996	269	138	8	83	319	67	314	6.81e-25	103
MsaG004245	MtrunA17_Chr1g0150071	28.221	326	130	10	77	317	21	327	1.17e-24	103
MsaG004245	MtrunA17_Chr4g0070871	27.336	289	151	8	86	322	225	506	1.86e-24	104
MsaG004245	MtrunA17_Chr3g0136811	27.682	289	110	6	78	286	22	291	6.29e-24	101
MsaG004245	MtrunA17_Chr4g0001761	26.975	367	150	11	59	333	10	350	2.08e-23	99.8
MsaG004245	MtrunA17_Chr3g0127091	27.331	311	149	8	76	323	57	353	5.36e-23	99.0
MsaG004245	MtrunA17_Chr2g0317021	30.303	231	119	8	117	319	116	332	6.46e-23	97.8
MsaG004245	MtrunA17_Chr3g0126511	28.049	246	130	7	118	334	125	352	1.34e-22	97.4
MsaG004245	MtrunA17_Chr8g0360351	31.169	231	113	9	117	317	65	279	3.44e-22	94.7
MsaG004245	MtrunA17_Chr3g0112291	27.740	292	132	8	87	317	100	373	1.58e-21	94.7
MsaG004245	MtrunA17_Chr5g0396731	29.752	242	127	7	81	289	74	305	1.73e-20	91.3
MsaG004245	MtrunA17_Chr2g0299981	29.358	218	102	5	118	284	267	483	2.10e-20	92.4
MsaG004245	MtrunA17_Chr3g0135961	27.734	256	133	5	118	321	286	541	5.71e-20	91.3
MsaG004245	MtrunA17_Chr4g0051661	28.571	231	118	8	117	317	182	395	2.04e-19	88.6
MsaG004245	MtrunA17_Chr5g0435721	26.587	252	127	5	77	287	190	424	2.06e-17	83.2
MsaG004245	MtrunA17_Chr2g0295401	29.545	264	124	9	120	322	94	356	2.29e-17	82.4
MsaG004245	MtrunA17_Chr8g0389921	25.786	318	178	8	54	321	127	436	1.13e-16	80.9
MsaG004245	MtrunA17_Chr4g0066371	26.429	280	119	8	118	327	86	348	2.32e-14	73.9
MsaG004245	MtrunA17_Chr6g0486661	34.815	135	70	5	118	244	124	248	1.98e-12	68.6
MsaG004245	MtrunA17_Chr7g0243571	25.781	256	118	8	118	305	92	343	2.18e-12	67.8
MsaG004245	MtrunA17_Chr1g0207571	26.230	305	121	11	112	327	54	343	2.29e-11	64.7
MsaG004245	MtrunA17_Chr2g0286951	25.090	279	127	10	118	328	87	351	4.43e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004245	AT3G62260.1	55.357	392	130	8	1	356	1	383	3.92e-142	408
MsaG004245	AT3G62260.2	55.357	392	131	8	1	356	1	384	7.98e-142	407
MsaG004245	AT3G62260.3	60.473	296	84	2	92	356	1	294	7.52e-126	363
MsaG004245	AT1G48040.1	53.299	394	128	11	1	356	7	382	2.02e-123	360
MsaG004245	AT3G17250.1	50.275	364	131	9	34	356	68	422	1.89e-112	334
MsaG004245	AT2G33700.1	47.649	319	114	4	73	356	78	378	4.84e-95	288
MsaG004245	AT3G51470.2	43.810	315	120	5	74	354	23	314	1.35e-85	262
MsaG004245	AT3G51470.1	43.810	315	120	5	74	354	67	358	2.90e-85	263
MsaG004245	AT2G25620.1	41.159	345	144	7	53	356	63	389	1.65e-78	246
MsaG004245	AT2G25620.2	41.159	345	144	7	53	356	63	389	1.65e-78	246
MsaG004245	AT5G10740.1	32.707	266	127	7	81	317	35	277	4.24e-37	137
MsaG004245	AT5G10740.2	32.707	266	127	7	81	317	35	277	4.24e-37	137
MsaG004245	AT4G31750.2	32.308	260	124	7	87	317	41	277	8.24e-36	132
MsaG004245	AT4G31750.1	32.308	260	124	7	87	317	41	277	8.30e-36	132
MsaG004245	AT4G31750.3	32.308	260	124	7	87	317	41	277	8.30e-36	132
MsaG004245	AT5G24940.1	31.579	266	130	7	81	317	35	277	2.65e-35	134
MsaG004245	AT1G07160.1	31.365	271	138	6	83	322	126	379	2.52e-31	122
MsaG004245	AT1G43900.1	30.888	259	128	8	87	317	131	366	2.22e-30	119
MsaG004245	AT1G78200.1	31.907	257	123	7	99	317	38	280	1.22e-28	112
MsaG004245	AT1G78200.3	31.907	257	123	7	99	317	38	280	1.22e-28	112
MsaG004245	AT1G78200.2	31.907	257	123	7	99	317	38	280	1.22e-28	112
MsaG004245	AT1G78200.5	31.837	245	121	7	105	317	5	235	1.52e-28	111
MsaG004245	AT1G78200.4	31.837	245	121	7	105	317	5	235	1.52e-28	111
MsaG004245	AT2G25070.1	27.003	337	142	6	78	329	22	339	5.78e-28	112
MsaG004245	AT2G25070.2	27.003	337	142	6	78	329	22	339	5.78e-28	112
MsaG004245	AT1G22280.3	29.870	231	122	5	117	317	64	284	1.02e-27	110
MsaG004245	AT5G53140.1	29.825	228	118	5	118	317	132	345	2.53e-27	112
MsaG004245	AT5G53140.2	29.825	228	118	5	118	317	132	345	2.53e-27	112
MsaG004245	AT2G30020.1	30.682	264	134	8	87	319	147	392	2.99e-27	111
MsaG004245	AT2G40860.1	28.438	320	166	9	47	326	359	655	8.41e-27	112
MsaG004245	AT2G40860.4	28.438	320	166	9	47	326	261	557	9.83e-27	111
MsaG004245	AT2G20630.2	28.755	233	120	8	117	319	62	278	2.24e-26	107
MsaG004245	AT1G67820.2	30.508	236	118	5	87	294	92	309	2.28e-26	108
MsaG004245	AT2G20630.1	28.571	231	119	8	117	317	62	276	5.75e-26	105
MsaG004245	AT1G67820.1	29.268	246	128	5	87	304	128	355	6.29e-26	108
MsaG004245	AT2G40180.1	29.492	295	163	7	58	322	109	388	6.69e-26	107
MsaG004245	AT4G26080.1	27.424	361	193	11	35	329	75	432	1.07e-25	107
MsaG004245	AT1G22280.1	29.004	231	118	5	117	317	64	278	1.39e-25	104
MsaG004245	AT1G34750.2	29.185	233	119	5	117	319	65	281	1.70e-25	104
MsaG004245	AT1G34750.1	29.185	233	119	5	117	319	65	281	1.70e-25	104
MsaG004245	AT1G34750.3	29.185	233	119	5	117	319	65	281	1.70e-25	104
MsaG004245	AT2G29380.1	29.766	299	141	9	75	317	73	358	7.94e-25	103
MsaG004245	AT4G31860.1	26.549	339	145	7	78	331	22	341	2.23e-24	102
MsaG004245	AT4G28400.3	28.571	231	119	8	117	317	44	258	2.76e-24	100
MsaG004245	AT4G28400.1	28.571	231	119	8	117	317	66	280	5.03e-24	100
MsaG004245	AT1G18030.1	27.857	280	146	8	85	319	80	348	8.14e-24	101
MsaG004245	AT1G07430.1	26.642	274	149	5	49	288	105	360	2.02e-23	101
MsaG004245	AT2G40860.2	28.283	297	150	9	47	303	359	632	3.94e-23	101
MsaG004245	AT4G31860.3	27.682	289	110	6	78	286	22	291	1.02e-22	97.1
MsaG004245	AT3G15260.2	27.273	231	122	6	117	317	72	286	6.52e-22	94.7
MsaG004245	AT3G15260.1	27.273	231	122	6	117	317	72	286	6.52e-22	94.7
MsaG004245	AT5G57050.1	30.102	196	107	3	118	284	160	354	1.14e-21	95.9
MsaG004245	AT5G57050.2	30.102	196	107	3	118	284	120	314	1.21e-21	95.5
MsaG004245	AT3G11410.1	29.134	254	131	5	75	287	102	347	3.49e-20	91.3
MsaG004245	AT2G20050.2	29.044	272	112	9	118	322	143	400	1.48e-19	90.9
MsaG004245	AT5G51760.2	28.287	251	133	4	81	287	80	327	1.53e-19	89.4
MsaG004245	AT2G20050.1	29.044	272	112	9	118	322	143	400	1.67e-19	90.9
MsaG004245	AT5G51760.1	28.287	251	133	4	81	287	110	357	1.89e-19	89.4
MsaG004245	AT1G17550.1	25.478	314	161	8	81	321	190	503	6.35e-19	88.2
MsaG004245	AT1G17550.2	25.478	314	161	8	81	321	190	503	6.35e-19	88.2
MsaG004245	AT1G72770.4	27.341	267	130	7	118	321	238	503	7.43e-19	88.2
MsaG004245	AT1G72770.1	27.341	267	130	7	118	321	238	503	7.43e-19	88.2
MsaG004245	AT1G72770.3	27.341	267	130	7	118	321	238	503	7.43e-19	88.2
MsaG004245	AT1G18030.2	27.155	232	114	7	85	272	80	300	1.31e-18	85.5
MsaG004245	AT4G27800.1	28.182	330	152	10	72	336	52	361	2.55e-18	85.9
MsaG004245	AT5G59220.1	28.146	302	157	10	32	287	60	347	3.52e-18	85.5
MsaG004245	AT4G31860.2	26.740	273	101	6	78	270	22	275	4.76e-18	83.6
MsaG004245	AT4G28400.2	29.032	186	90	6	117	272	66	239	2.01e-17	81.3
MsaG004245	AT2G34740.1	24.786	234	128	10	117	319	118	334	1.62e-15	77.0
MsaG004245	AT5G57050.3	32.558	129	84	2	118	244	160	287	3.00e-15	75.9
MsaG004245	AT1G34750.4	27.419	186	93	4	117	272	65	238	4.23e-15	74.7
MsaG004245	AT1G22280.2	35.766	137	67	4	117	248	64	184	4.94e-15	73.6
MsaG004245	AT4G08260.1	29.545	220	109	8	117	319	18	208	5.96e-15	73.6
MsaG004245	AT3G06270.1	35.338	133	70	3	118	244	88	210	1.78e-14	74.3
MsaG004245	AT2G40860.3	28.016	257	125	8	47	263	359	595	5.98e-14	73.6
MsaG004245	AT2G34740.2	26.768	198	100	10	117	282	132	316	1.50e-12	68.2
MsaG004245	AT2G34740.3	26.768	198	100	10	117	282	114	298	1.62e-12	67.8
MsaG004245	AT1G72770.2	32.192	146	79	4	118	244	238	382	6.72e-12	66.6
MsaG004245	AT1G72770.5	32.192	146	79	4	118	244	238	382	6.72e-12	66.6
MsaG004245	AT5G59220.2	28.879	232	132	9	32	244	60	277	1.42e-11	65.1
MsaG004245	AT3G23360.1	25.943	212	117	8	118	317	74	257	6.06e-11	62.8

Find 94 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCTCTTACTGCTTTGATATT+TGG	0.143776	1:-67271139	MsaT004245.1:CDS
AAATCCCTGGCGCACTTCTC+TGG	0.265688	1:+67270379	None:intergenic
CCATAAAAGGCACTTGGTTT+AGG	0.274695	1:+67271453	None:intergenic
CTTATATACGCTGCAGCTTC+AGG	0.274755	1:+67271328	None:intergenic
TCATAGGATGCGACGGCATC+TGG	0.286067	1:-67270465	MsaT004245.1:CDS
TGATTATTGCTTCCTTTATT+CGG	0.290741	1:+67272613	None:intergenic
CCAAAAGAAAAGCCTTTCTA+AGG	0.291213	1:+67271215	None:intergenic
AAAGCTCATTACCCCATAAA+AGG	0.322934	1:+67271440	None:intergenic
TGCTTCTTTCAGGCTTCTAA+TGG	0.327203	1:-67270756	MsaT004245.1:intron
CTCCGCTCTGATGGATAAAT+AGG	0.332580	1:+67270659	None:intergenic
AGATGATTTGTCATCTCATC+TGG	0.348517	1:-67271493	MsaT004245.1:CDS
TGTTCTAAAATTCTTCTTTG+AGG	0.363877	1:-67271299	MsaT004245.1:CDS
CTCAATTTCCGTTGGGGAGG+TGG	0.372037	1:+67270262	None:intergenic
GCCTCTCCTCCCTTGACCAT+GGG	0.399297	1:-67270300	MsaT004245.1:CDS
ACATGGAAGATGAACATATA+AGG	0.401510	1:-67271518	MsaT004245.1:CDS
TTTGTCCCCTCCATCCGTTC+CGG	0.407179	1:-67271570	MsaT004245.1:CDS
CAAATGTATCAGGTATTTGA+TGG	0.410247	1:-67271361	MsaT004245.1:intron
TTGTAGCTTGAGAAGCTTGT+TGG	0.428662	1:-67270212	MsaT004245.1:CDS
ATTTAGTTATGGAGGCATTA+CGG	0.434702	1:-67270360	MsaT004245.1:CDS
AGCAATGTGAACACTTCATC+AGG	0.438598	1:-67271169	MsaT004245.1:CDS
GGTAGAGAATTCCCTTAGAA+AGG	0.439506	1:-67271227	MsaT004245.1:CDS
GTGCGCCAGGGATTTAGTTA+TGG	0.439518	1:-67270371	MsaT004245.1:CDS
TTCCGTTGGGGAGGTGGTGA+TGG	0.442729	1:+67270268	None:intergenic
ACAGCATCTCAATTTCCGTT+GGG	0.444872	1:+67270255	None:intergenic
GCCTTGTTCGTAAAGGTTTG+AGG	0.452873	1:-67270414	MsaT004245.1:CDS
TTGACATGTCTCAAGATCAT+AGG	0.464758	1:-67270682	MsaT004245.1:CDS
TCAACTCGCCTCCGCTCTGA+TGG	0.483657	1:+67270650	None:intergenic
CTTCTAATGGTGGCAAATGC+CGG	0.483674	1:-67270743	MsaT004245.1:CDS
CCCAATGTCGGCAAAACTAC+CGG	0.492205	1:+67271551	None:intergenic
TACAGCATCTCAATTTCCGT+TGG	0.495681	1:+67270254	None:intergenic
TGCCTCTCCTCCCTTGACCA+TGG	0.496106	1:-67270301	MsaT004245.1:CDS
AATCCCTGGCGCACTTCTCT+GGG	0.496285	1:+67270380	None:intergenic
CATTGGGCCACGTAGATACA+TGG	0.506610	1:-67271535	MsaT004245.1:CDS
ATGACCCAGAGAAGTGCGCC+AGG	0.512332	1:-67270384	MsaT004245.1:CDS
CATAGGATGCGACGGCATCT+GGG	0.522185	1:-67270464	MsaT004245.1:CDS
TTCTTTCAGGCTTCTAATGG+TGG	0.526946	1:-67270753	MsaT004245.1:intron
GCTCTGACTCCCCATGGTCA+AGG	0.526959	1:+67270290	None:intergenic
GCTGTTAGCCTTGTTCGTAA+AGG	0.539320	1:-67270421	MsaT004245.1:CDS
GATGACGAATTCCTCATCAT+AGG	0.544393	1:-67270481	MsaT004245.1:CDS
AAAACTACCGGAACGGATGG+AGG	0.545279	1:+67271563	None:intergenic
CTCTGACTCCCCATGGTCAA+GGG	0.545804	1:+67270291	None:intergenic
CGAGCAGTTCTCAGTCGTAA+AGG	0.550384	1:-67270713	MsaT004245.1:CDS
AACTACCGGAACGGATGGAG+GGG	0.553531	1:+67271565	None:intergenic
AAACTACCGGAACGGATGGA+GGG	0.556241	1:+67271564	None:intergenic
TCCTCAAACCTTTACGAACA+AGG	0.556250	1:+67270413	None:intergenic
TGCCTCCATAACTAAATCCC+TGG	0.558404	1:+67270366	None:intergenic
CATCCTCTGTTAGAACCACT+TGG	0.559287	1:+67270500	None:intergenic
GGCAAAACTACCGGAACGGA+TGG	0.564330	1:+67271560	None:intergenic
TTACTGCTTTGATATTTGGA+AGG	0.566507	1:-67271135	MsaT004245.1:intron
ACAGATATAACCTCGGAAGC+TGG	0.566543	1:-67271615	MsaT004245.1:CDS
GGAAGCAATAATCACGAGAT+CGG	0.569319	1:-67272604	MsaT004245.1:CDS
AGAACCACTTGGTGGAACTC+AGG	0.569374	1:+67270511	None:intergenic
CGCCAGGGATTTAGTTATGG+AGG	0.569650	1:-67270368	MsaT004245.1:CDS
ATTACCCCATAAAAGGCACT+TGG	0.570593	1:+67271447	None:intergenic
TTGGGTGGCTATGTTGAGGA+TGG	0.578073	1:-67270623	MsaT004245.1:intron
GAGAACTGCTCGGCAGTCAC+CGG	0.579491	1:+67270724	None:intergenic
GTGATGGCTCTGACTCCCCA+TGG	0.582322	1:+67270284	None:intergenic
CCTCTGTTAGAACCACTTGG+TGG	0.583923	1:+67270503	None:intergenic
CCTCTCCTCCCTTGACCATG+GGG	0.584021	1:-67270299	MsaT004245.1:CDS
CAAAAGAAAAGCCTTTCTAA+GGG	0.589375	1:+67271216	None:intergenic
ATGCTGTAGCCTCTCTGCAG+AGG	0.592273	1:-67270239	MsaT004245.1:CDS
ATGATCTTGAGACATGTCAA+TGG	0.593621	1:+67270685	None:intergenic
TTCCTCATCATAGGATGCGA+CGG	0.597323	1:-67270472	MsaT004245.1:CDS
CCCCATGGTCAAGGGAGGAG+AGG	0.598657	1:+67270299	None:intergenic
AGCTTGAGAAGCTTGTTGGA+AGG	0.599170	1:-67270208	MsaT004245.1:CDS
GTATCTACGTGGCCCAATGT+CGG	0.599170	1:+67271539	None:intergenic
TATCAACTTCAGATATCTGA+GGG	0.604131	1:+67271266	None:intergenic
TATCAGGTATTTGATGGTCA+CGG	0.605355	1:-67271355	MsaT004245.1:intron
GATGATTTGTCATCTCATCT+GGG	0.605596	1:-67271492	MsaT004245.1:CDS
TTGTTCGTAAAGGTTTGAGG+AGG	0.607519	1:-67270411	MsaT004245.1:CDS
CATCTCAATTTCCGTTGGGG+AGG	0.607773	1:+67270259	None:intergenic
CAGCATCTCAATTTCCGTTG+GGG	0.615519	1:+67270256	None:intergenic
GGAAGCTGGTCTTGAATCTG+CGG	0.621302	1:-67271601	MsaT004245.1:CDS
AGATTCAAGACCAGCTTCCG+AGG	0.622877	1:+67271605	None:intergenic
TGCCGTCGCATCCTATGATG+AGG	0.626062	1:+67270470	None:intergenic
TTATCAACTTCAGATATCTG+AGG	0.626203	1:+67271265	None:intergenic
AGCCATCACCACCTCCCCAA+CGG	0.627178	1:-67270270	MsaT004245.1:CDS
AGATCCTGAGTTCCACCAAG+TGG	0.637528	1:-67270515	MsaT004245.1:CDS
TGACTCCCCATGGTCAAGGG+AGG	0.641391	1:+67270294	None:intergenic
AGTTCTCAGTCGTAAAGGAG+AGG	0.648854	1:-67270708	MsaT004245.1:CDS
TGTCGGCAAAACTACCGGAA+CGG	0.650590	1:+67271556	None:intergenic
CTATTTATCCATCAGAGCGG+AGG	0.652008	1:-67270658	MsaT004245.1:CDS
TATCAAAGCAGTAAGAGCTG+TGG	0.655912	1:+67271144	None:intergenic
CCACCAAGTGGTTCTAACAG+AGG	0.661607	1:-67270503	MsaT004245.1:CDS
TGTTGTGTGTCAACAAAGCG+TGG	0.664702	1:-67272650	MsaT004245.1:CDS
AAAATTGGGTGGCTATGTTG+AGG	0.666115	1:-67270627	MsaT004245.1:CDS
CTTTACGACTGAGAACTGCT+CGG	0.672783	1:+67270714	None:intergenic
TGACCCAGAGAAGTGCGCCA+GGG	0.686052	1:-67270383	MsaT004245.1:CDS
TACAAAGAGCCTCTGCAGAG+AGG	0.687122	1:+67270230	None:intergenic
GCAATGTGAACACTTCATCA+GGG	0.690510	1:-67271168	MsaT004245.1:CDS
TAAGACTACAGATATAACCT+CGG	0.729528	1:-67271622	MsaT004245.1:CDS
TCATCTTCCATGTATCTACG+TGG	0.732485	1:+67271528	None:intergenic
GGCCTATTTATCCATCAGAG+CGG	0.741189	1:-67270661	MsaT004245.1:CDS
CAGGTATTTGATGGTCACGG+AGG	0.753703	1:-67271352	MsaT004245.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	67270192	67272692	67270192	ID=MsaG004245
Chr1	mRNA	67270192	67272692	67270192	ID=MsaT004245.1;Parent=MsaG004245
Chr1	exon	67270192	67270535	67270192	ID=MsaT004245.1.exon5;Parent=MsaT004245.1
Chr1	CDS	67270192	67270535	67270192	ID=cds.MsaT004245.1;Parent=MsaT004245.1
Chr1	exon	67270624	67270766	67270624	ID=MsaT004245.1.exon4;Parent=MsaT004245.1
Chr1	CDS	67270624	67270766	67270624	ID=cds.MsaT004245.1;Parent=MsaT004245.1
Chr1	exon	67271136	67271371	67271136	ID=MsaT004245.1.exon3;Parent=MsaT004245.1
Chr1	CDS	67271136	67271371	67271136	ID=cds.MsaT004245.1;Parent=MsaT004245.1
Chr1	exon	67271452	67271649	67271452	ID=MsaT004245.1.exon2;Parent=MsaT004245.1
Chr1	CDS	67271452	67271649	67271452	ID=cds.MsaT004245.1;Parent=MsaT004245.1
Chr1	exon	67272531	67272692	67272531	ID=MsaT004245.1.exon1;Parent=MsaT004245.1
Chr1	CDS	67272531	67272692	67272531	ID=cds.MsaT004245.1;Parent=MsaT004245.1

Gene Sequence

>MsaT004245.1

ATGGTGGCTGAAGCAGAGGTTGTTGTGTGTCAACAAAGCGTGGATGTGAAGTATTTTCCGAATAAAGGAAGCAATAATCACGAGATCGGTGATGTAGATTCGAATTTTGATCGAGTTCGTGTTTCTGAATCAGTTTCTGCTGAGTTACTTACTACAAAAGAAGATGTTAAGACTACAGATATAACCTCGGAAGCTGGTCTTGAATCTGCGGTTCTGCAATTTGTCCCCTCCATCCGTTCCGGTAGTTTTGCCGACATTGGGCCACGTAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCATCTGGGATCACAATACAATTTTCCTAAACCAAGTGCCTTTTATGGGGTATTTGATGGTCACGGAGGACCTGAAGCTGCAGCGTATATAAGAAAAAATGTTCTAAAATTCTTCTTTGAGGATGTCAATTTCCCTCAGATATCTGAAGTTGATAATGTATTTTTACAAGAGGTAGAGAATTCCCTTAGAAAGGCTTTTCTTTTGGCAGACTCAGCTTTGGCTGATGATAGCAATGTGAACACTTCATCAGGGACCACAGCTCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCAAATGCCGGTGACTGCCGAGCAGTTCTCAGTCGTAAAGGAGAGGCCATTGACATGTCTCAAGATCATAGGCCTATTTATCCATCAGAGCGGAGGCGAGTTGAAAAATTGGGTGGCTATGTTGAGGATGATCCTGAGTTCCACCAAGTGGTTCTAACAGAGGATGACGAATTCCTCATCATAGGATGCGACGGCATCTGGGATGTGATGACAAGTCAGCATGCTGTTAGCCTTGTTCGTAAAGGTTTGAGGAGGCATGATGACCCAGAGAAGTGCGCCAGGGATTTAGTTATGGAGGCATTACGGCTCAACACATTTGACAATCTTACAGTGATCATCATATGCCTCTCCTCCCTTGACCATGGGGAGTCAGAGCCATCACCACCTCCCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAGCTTGTTGGAAGGCAATGCTAGCAACTGA

Protein sequence

>MsaT004245.1

MVAEAEVVVCQQSVDVKYFPNKGSNNHEIGDVDSNFDRVRVSESVSAELLTTKEDVKTTDITSEAGLESAVLQFVPSIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSQYNFPKPSAFYGVFDGHGGPEAAAYIRKNVLKFFFEDVNFPQISEVDNVFLQEVENSLRKAFLLADSALADDSNVNTSSGTTALTALIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPSERRRVEKLGGYVEDDPEFHQVVLTEDDEFLIIGCDGIWDVMTSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIICLSSLDHGESEPSPPPQRKLRCCSLSAEALCSLRSLLEGNASN*