AlfalfaGEDB | MsaG004246

M. sativa ssp. caerulea / MsaG004246

KEGG: K03083
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004246	P51138.1	100.000	411	0	0	1	411	1	411	0.0	857

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004246	sp\|P51138\|MSK2_MEDSA	100.000	411	0	0	1	411	1	411	0.0	857

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004246	G7IBT9	99.270	411	3	0	1	411	2	412	0.0	852

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004246	MtrunA17_Chr1g0194201	99.270	411	3	0	1	411	2	412	0.0	852
MsaG004246	MtrunA17_Chr7g0270371	90.291	412	38	2	1	411	2	412	0.0	781
MsaG004246	MtrunA17_Chr1g0193081	83.659	410	66	1	1	409	1	410	0.0	727
MsaG004246	MtrunA17_Chr2g0277011	71.971	421	106	2	1	410	6	425	0.0	642
MsaG004246	MtrunA17_Chr7g0246591	73.750	400	98	1	10	402	70	469	0.0	637
MsaG004246	MtrunA17_Chr2g0320011	77.394	376	84	1	32	407	46	420	0.0	629
MsaG004246	MtrunA17_Chr8g0350311	70.905	409	109	3	2	402	61	467	0.0	615
MsaG004246	MtrunA17_Chr2g0284091	74.799	373	93	1	35	407	1	372	0.0	612
MsaG004246	MtrunA17_Chr4g0045841	35.274	292	174	6	80	363	61	345	1.19e-56	191
MsaG004246	MtrunA17_Chr7g0248461	37.037	297	171	6	78	365	42	331	2.95e-55	187

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG004246	AT5G14640.1	84.841	409	62	0	1	409	1	409	740
MsaG004246	AT5G14640.2	84.841	409	62	0	1	409	1	409	740
MsaG004246	AT5G26751.1	85.679	405	53	1	1	405	1	400	736
MsaG004246	AT3G05840.2	83.130	409	68	1	1	409	1	408	730
MsaG004246	AT3G05840.1	83.130	409	68	1	1	409	1	408	730
MsaG004246	AT4G00720.1	75.312	401	91	2	10	402	66	466	646
MsaG004246	AT1G57870.1	72.993	411	104	2	5	409	8	417	639
MsaG004246	AT1G57870.4	72.993	411	104	2	5	409	8	417	639
MsaG004246	AT1G57870.2	72.993	411	104	2	5	409	8	417	639
MsaG004246	AT1G57870.3	72.993	411	104	2	5	409	8	417	638

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Find 98 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTCTTCAAGACAAG+AGG	0.595284	1:+67296560	MsaT004246.1:CDS
AACTTCACCAGCATTTCAGC+AGG	0.533683	1:-67298663	None:intergenic
AAGACAAGAGGTATAAGAAC+CGG	0.414384	1:+67296572	MsaT004246.1:CDS
AAGTTACCTGATGAGATTCT+TGG	0.357811	1:+67295629	MsaT004246.1:CDS
AATTTGAACTCAGTGTAATT+AGG	0.303776	1:-67297852	None:intergenic
ACACCTCAGCCATTGACATT+TGG	0.424221	1:+67297388	MsaT004246.1:CDS
ACAGCTGTGCTTCGAAGATT+TGG	0.289263	1:-67298061	None:intergenic
ACATATCTTACATCTGTTCG+AGG	0.526199	1:+67297325	MsaT004246.1:CDS
ACATCTACTATTCCAGAAGC+AGG	0.513318	1:-67295578	None:intergenic
ACGAGATCCACAGCTTCCGG+TGG	0.669001	1:-67298016	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	67295557	67298734	67295557	ID=MsaG004246
Chr1	mRNA	67295557	67298734	67295557	ID=MsaT004246.1;Parent=MsaG004246
Chr1	exon	67295557	67295673	67295557	ID=MsaT004246.1.exon1;Parent=MsaT004246.1
Chr1	CDS	67295557	67295673	67295557	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67296165	67296257	67296165	ID=MsaT004246.1.exon2;Parent=MsaT004246.1
Chr1	CDS	67296165	67296257	67296165	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67296367	67296426	67296367	ID=MsaT004246.1.exon3;Parent=MsaT004246.1
Chr1	CDS	67296367	67296426	67296367	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67296523	67296795	67296523	ID=MsaT004246.1.exon4;Parent=MsaT004246.1
Chr1	CDS	67296523	67296795	67296523	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67296920	67296994	67296920	ID=MsaT004246.1.exon5;Parent=MsaT004246.1
Chr1	CDS	67296920	67296994	67296920	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67297161	67297217	67297161	ID=MsaT004246.1.exon6;Parent=MsaT004246.1
Chr1	CDS	67297161	67297217	67297161	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67297309	67297449	67297309	ID=MsaT004246.1.exon7;Parent=MsaT004246.1
Chr1	CDS	67297309	67297449	67297309	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67297541	67297591	67297541	ID=MsaT004246.1.exon8;Parent=MsaT004246.1
Chr1	CDS	67297541	67297591	67297541	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67297810	67297905	67297810	ID=MsaT004246.1.exon9;Parent=MsaT004246.1
Chr1	CDS	67297810	67297905	67297810	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67297998	67298081	67297998	ID=MsaT004246.1.exon10;Parent=MsaT004246.1
Chr1	CDS	67297998	67298081	67297998	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67298458	67298560	67298458	ID=MsaT004246.1.exon11;Parent=MsaT004246.1
Chr1	CDS	67298458	67298560	67298458	ID=cds.MsaT004246.1;Parent=MsaT004246.1
Chr1	exon	67298649	67298734	67298649	ID=MsaT004246.1.exon12;Parent=MsaT004246.1
Chr1	CDS	67298649	67298734	67298649	ID=cds.MsaT004246.1;Parent=MsaT004246.1

Gene Sequence

>MsaT004246.1

ATGGCAACAGCGGGTGTAGCACCTGCTTCTGGAATAGTAGATGTAAATGCAAGTTCAGCTATTGCTGTTGATAAGTTACCTGATGAGATTCTTGGCATGAGAATTAAGGATGATAAGGAAATGGAAGCACATGTGGTAGATGGAAATAGTACTGAAGCAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCGTGCTGTTGGACAGGGATCATTTGGTGTAGTTTTCCAGGCTAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAATTGCAAACAATGCGCCTTCTGGACCACCCCAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGACGAGCTCTATCTTAACTTGGTACTTGAGTTTGTTCCTGAGACTGTCCATCGTGTGATCAGACACTACAGCAAAATGAATCAGAGGATGCCATTGATATACGTAAAACTTTATTCTTACCAGATATGTAGATCACTAGCTTATATTCATAACTGTGTTGGAGTGTCTCATAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCATCAGCTGAAGCTGTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAGGGTGAACCAAACATATCTTACATCTGTTCGAGGTATTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAATACACCTCAGCCATTGACATTTGGTCAGCTGGCTGTGTGCTTGGCGAACTATTGCTTGGCCAGCCTCTCTTTCCCGGTGCGAGTGGAGTAGACCAGCTCGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACTGAGTTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCGCAAGCGTATGCCACCGGAAGCTGTGGATCTCGTCTCAAGACTACTTCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTGGTTCATCCCTTCTTTGATGAATTGCGTGATCCAAATACCCGCTTACCAAATGGGCGACATCTTCCTCCTTTATTTAACTTCAAAGCCAACGAGCTTAAGGGAGTGCCTGCTGAAATGCTGGTGAAGTTGGTTCCGTCTCACGCAAGAAAGCAGTGTTCTTTGTTTGCGTCGTCATAG

Protein sequence

>MsaT004246.1

MATAGVAPASGIVDVNASSAIAVDKLPDEILGMRIKDDKEMEAHVVDGNSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEFVPETVHRVIRHYSKMNQRMPLIYVKLYSYQICRSLAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLVPSHARKQCSLFASS*