AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG004263

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004263 MtrunA17_Chr1g0194481 83.283 329 25 3 1 303 1 325 5.73e-176 489
MsaG004263 MtrunA17_Chr7g0270191 58.086 303 73 17 27 303 21 295 1.92e-82 250
MsaG004263 MtrunA17_Chr2g0294231 44.409 313 110 11 44 303 71 372 5.36e-52 175
MsaG004263 MtrunA17_Chr5g0418781 43.721 215 86 5 94 299 82 270 7.80e-44 150
MsaG004263 MtrunA17_Chr4g0051881 48.663 187 70 6 122 300 164 332 8.11e-44 152
MsaG004263 MtrunA17_Chr5g0443131 80.769 78 15 0 122 199 143 220 2.19e-41 145
MsaG004263 MtrunA17_Chr4g0068541 39.301 229 74 7 120 295 192 408 7.63e-38 139
MsaG004263 MtrunA17_Chr7g0224801 71.429 70 20 0 124 193 81 150 2.00e-31 115
MsaG004263 MtrunA17_Chr3g0129361 64.634 82 28 1 120 200 128 209 5.28e-31 115
MsaG004263 MtrunA17_Chr1g0150801 62.500 80 30 0 115 194 81 160 5.48e-31 114
MsaG004263 MtrunA17_Chr8g0335811 63.855 83 29 1 111 192 128 210 2.79e-30 114
MsaG004263 MtrunA17_Chr5g0418191 65.333 75 26 0 121 195 305 379 3.49e-30 118
MsaG004263 MtrunA17_Chr5g0418191 58.065 62 23 2 136 195 151 211 8.66e-16 77.4
MsaG004263 MtrunA17_Chr7g0218081 61.728 81 31 0 121 201 395 475 9.35e-30 118
MsaG004263 MtrunA17_Chr7g0218081 46.809 94 34 2 121 199 198 290 1.82e-17 82.4
MsaG004263 MtrunA17_Chr8g0383351 67.568 74 23 1 120 192 143 216 2.37e-29 112
MsaG004263 MtrunA17_Chr7g0248721 68.831 77 23 1 117 193 122 197 2.81e-29 111
MsaG004263 MtrunA17_Chr4g0042831 64.000 75 27 0 121 195 263 337 5.73e-29 114
MsaG004263 MtrunA17_Chr4g0042831 44.444 81 43 1 119 199 130 208 2.22e-16 79.0
MsaG004263 MtrunA17_Chr3g0101131 59.091 88 36 0 109 196 388 475 2.45e-28 114
MsaG004263 MtrunA17_Chr3g0101131 56.522 69 28 2 136 204 243 309 1.19e-16 80.1
MsaG004263 MtrunA17_Chr1g0188941 48.913 92 47 0 105 196 20 111 4.47e-28 105
MsaG004263 MtrunA17_Chr5g0445311 56.977 86 37 0 116 201 344 429 5.04e-28 113
MsaG004263 MtrunA17_Chr5g0445311 45.283 106 49 2 99 204 171 267 3.68e-17 81.6
MsaG004263 MtrunA17_Chr8g0383251 51.064 94 43 1 108 198 77 170 3.11e-27 104
MsaG004263 MtrunA17_Chr3g0079691 59.756 82 33 0 120 201 479 560 4.89e-27 110
MsaG004263 MtrunA17_Chr3g0079691 54.795 73 32 1 136 208 280 351 1.44e-18 85.9
MsaG004263 MtrunA17_Chr3g0129321 57.143 77 33 0 122 198 104 180 6.29e-27 104
MsaG004263 MtrunA17_Chr3g0106491 53.846 91 42 0 120 210 349 439 1.33e-26 108
MsaG004263 MtrunA17_Chr3g0106491 44.444 81 40 2 119 199 185 260 2.39e-15 76.3
MsaG004263 MtrunA17_Chr7g0243891 48.485 99 43 1 120 210 358 456 7.07e-26 107
MsaG004263 MtrunA17_Chr7g0243891 56.250 64 27 1 136 199 216 278 1.33e-16 80.1
MsaG004263 MtrunA17_Chr4g0004911 57.895 76 32 0 120 195 320 395 4.09e-25 104
MsaG004263 MtrunA17_Chr4g0004911 54.688 64 29 0 136 199 184 247 2.72e-18 85.1
MsaG004263 MtrunA17_Chr8g0386241 53.521 71 33 0 123 193 90 160 4.42e-25 99.0
MsaG004263 MtrunA17_Chr7g0249301 52.874 87 39 1 112 196 266 352 5.36e-25 103
MsaG004263 MtrunA17_Chr7g0249301 55.385 65 28 1 135 199 61 124 3.44e-17 81.3
MsaG004263 MtrunA17_Chr7g0249311 57.143 77 33 0 120 196 376 452 7.65e-25 104
MsaG004263 MtrunA17_Chr7g0249311 59.375 64 25 1 136 199 179 241 1.12e-17 83.6
MsaG004263 MtrunA17_Chr5g0432161 56.098 82 36 0 120 201 405 486 1.57e-24 103
MsaG004263 MtrunA17_Chr5g0432161 55.000 60 26 1 136 195 244 302 1.40e-14 73.9
MsaG004263 MtrunA17_Chr7g0263531 57.333 75 32 0 121 195 346 420 2.86e-24 102
MsaG004263 MtrunA17_Chr7g0263531 46.341 82 38 2 137 218 190 265 4.12e-16 78.2
MsaG004263 MtrunA17_Chr7g0238921 66.667 57 19 0 136 192 124 180 3.74e-22 94.4
MsaG004263 MtrunA17_Chr2g0322391 40.517 116 65 2 120 234 333 445 7.25e-22 95.9
MsaG004263 MtrunA17_Chr2g0333851 53.247 77 33 2 123 196 154 230 8.90e-22 93.2
MsaG004263 MtrunA17_Chr3g0099641 40.351 114 64 3 120 232 235 345 1.50e-21 94.4
MsaG004263 MtrunA17_Chr4g0075201 51.948 77 36 1 120 195 251 327 2.02e-21 94.0
MsaG004263 MtrunA17_Chr4g0074001 37.190 121 61 1 116 221 339 459 3.96e-21 93.2
MsaG004263 MtrunA17_Chr2g0288871 51.948 77 36 1 120 195 289 365 5.14e-21 93.2
MsaG004263 MtrunA17_Chr6g0485431 46.835 79 41 1 122 199 140 218 5.89e-21 91.7
MsaG004263 MtrunA17_Chr5g0447701 55.263 76 34 0 121 196 237 312 1.13e-20 91.3
MsaG004263 MtrunA17_Chr5g0447701 40.909 110 58 4 136 241 92 198 1.14e-13 70.9
MsaG004263 MtrunA17_Chr7g0270831 49.351 77 38 1 120 195 200 276 2.59e-20 90.5
MsaG004263 MtrunA17_Chr4g0051181 50.649 77 37 1 120 195 227 303 4.55e-20 90.1
MsaG004263 MtrunA17_Chr7g0216891 44.211 95 52 1 100 193 183 277 5.29e-20 90.1
MsaG004263 MtrunA17_Chr2g0293481 55.072 69 29 2 137 204 268 335 7.22e-20 89.4
MsaG004263 MtrunA17_Chr7g0270051 52.055 73 34 1 137 208 54 126 1.67e-19 86.3
MsaG004263 MtrunA17_Chr8g0387501 50.704 71 33 2 135 204 128 197 1.80e-19 86.3
MsaG004263 MtrunA17_Chr2g0302391 37.500 104 58 2 103 199 172 275 2.25e-19 87.8
MsaG004263 MtrunA17_Chr8g0348311 52.174 69 31 2 137 204 156 223 2.49e-19 86.7
MsaG004263 MtrunA17_Chr1g0150281 39.604 101 56 2 124 219 124 224 4.37e-19 85.5
MsaG004263 MtrunA17_Chr4g0001361 54.839 62 27 1 135 195 161 222 6.17e-19 85.5
MsaG004263 MtrunA17_Chr1g0189391 50.704 71 34 1 123 192 84 154 1.63e-18 84.3
MsaG004263 MtrunA17_Chr5g0401821 45.679 81 43 1 113 192 176 256 2.32e-18 83.2
MsaG004263 MtrunA17_Chr3g0136961 51.471 68 30 2 134 198 136 203 3.62e-18 82.8
MsaG004263 MtrunA17_Chr1g0147881 45.333 75 40 1 119 192 245 319 4.81e-18 83.2
MsaG004263 MtrunA17_Chr7g0248691 45.000 80 40 2 137 212 155 234 4.85e-18 83.2
MsaG004263 MtrunA17_Chr4g0025051 44.872 78 42 1 123 199 322 399 5.45e-18 84.3
MsaG004263 MtrunA17_Chr4g0060271 46.753 77 40 1 120 195 239 315 6.16e-18 84.0
MsaG004263 MtrunA17_Chr4g0025061 46.154 78 41 1 123 199 347 424 9.09e-18 83.6
MsaG004263 MtrunA17_Chr1g0150271 41.860 86 46 2 135 219 100 182 4.96e-17 79.0
MsaG004263 MtrunA17_Chr4g0071521 40.000 85 50 1 119 202 228 312 8.55e-17 79.3
MsaG004263 MtrunA17_Chr3g0139021 45.455 77 41 1 117 192 295 371 1.16e-16 79.7
MsaG004263 MtrunA17_Chr8g0379461 50.000 60 29 1 137 195 77 136 2.36e-16 77.0
MsaG004263 MtrunA17_Chr2g0289181 44.286 70 38 1 136 204 14 83 2.66e-16 76.6
MsaG004263 MtrunA17_Chr2g0284321 48.333 60 30 1 137 195 36 95 3.67e-16 75.9
MsaG004263 MtrunA17_Chr4g0053281 43.590 78 43 1 116 192 246 323 3.73e-16 77.8
MsaG004263 MtrunA17_Chr1g0202461 49.275 69 33 2 137 204 262 329 8.04e-16 77.0
MsaG004263 MtrunA17_Chr7g0228941 54.237 59 26 1 137 194 53 111 8.15e-16 72.8
MsaG004263 MtrunA17_Chr5g0447711 46.053 76 41 0 121 196 215 290 1.31e-15 75.9
MsaG004263 MtrunA17_Chr5g0447711 30.345 145 80 4 136 271 83 215 4.43e-12 65.5
MsaG004263 MtrunA17_Chr2g0319961 35.537 121 55 4 88 195 30 140 1.37e-15 75.1
MsaG004263 MtrunA17_Chr1g0184691 50.877 57 27 1 137 192 294 350 5.65e-15 74.3
MsaG004263 MtrunA17_Chr8g0387981 34.848 132 64 4 82 191 59 190 1.39e-14 73.6
MsaG004263 MtrunA17_Chr5g0432071 49.206 63 31 1 136 198 104 165 6.39e-14 69.7
MsaG004263 MtrunA17_Chr8g0347251 39.623 106 52 4 97 191 90 194 1.59e-13 70.1
MsaG004263 MtrunA17_Chr3g0126391 51.667 60 26 1 135 191 132 191 1.92e-13 69.7
MsaG004263 MtrunA17_Chr7g0244981 50.847 59 26 1 136 191 122 180 2.41e-13 68.9
MsaG004263 MtrunA17_Chr4g0024391 37.179 78 48 1 123 199 216 293 3.16e-13 69.7
MsaG004263 MtrunA17_Chr7g0275531 50.000 60 27 1 135 191 117 176 4.80e-13 68.6
MsaG004263 MtrunA17_Chr7g0244971 46.667 60 29 1 135 191 122 181 3.92e-12 65.5
MsaG004263 MtrunA17_Chr2g0315361 48.333 60 28 1 135 191 147 206 7.82e-12 64.7
MsaG004263 MtrunA17_Chr1g0188961 41.935 62 36 0 156 217 3 64 1.47e-11 59.3
MsaG004263 MtrunA17_Chr2g0315381 46.667 60 29 1 135 191 143 202 1.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004263 AT2G47260.1 44.681 329 117 8 31 303 18 337 5.76e-63 202
MsaG004263 AT1G29860.1 51.087 184 68 4 120 303 120 281 2.37e-49 166
MsaG004263 AT4G18170.1 80.460 87 17 0 113 199 149 235 2.94e-47 161
MsaG004263 AT3G62340.1 37.184 277 155 5 27 303 19 276 2.40e-45 155
MsaG004263 AT5G49520.1 43.243 259 98 8 79 299 137 384 2.78e-44 155
MsaG004263 AT5G46350.1 77.647 85 18 1 122 205 169 253 3.89e-43 150
MsaG004263 AT1G69310.4 84.211 76 12 0 117 192 128 203 1.06e-41 146
MsaG004263 AT1G69310.2 84.211 76 12 0 117 192 128 203 1.06e-41 146
MsaG004263 AT1G69310.1 84.211 76 12 0 117 192 128 203 1.06e-41 146
MsaG004263 AT1G69310.3 78.947 76 12 1 117 192 128 199 3.89e-36 131
MsaG004263 AT4G39410.1 53.846 117 50 3 95 210 185 298 1.34e-33 125
MsaG004263 AT5G13080.1 70.423 71 21 0 123 193 54 124 3.09e-32 117
MsaG004263 AT2G46130.1 66.234 77 26 0 117 193 11 87 6.25e-32 115
MsaG004263 AT2G44745.1 61.538 91 34 1 103 192 111 201 9.07e-32 118
MsaG004263 AT3G01970.1 68.571 70 22 0 123 192 52 121 7.34e-31 113
MsaG004263 AT1G13960.2 66.667 75 25 0 121 195 241 315 5.90e-30 116
MsaG004263 AT1G13960.2 60.000 60 23 1 136 195 76 134 7.14e-17 80.5
MsaG004263 AT5G07100.2 43.939 132 70 2 68 199 77 204 7.98e-30 113
MsaG004263 AT5G07100.2 46.970 66 35 0 136 201 24 89 1.47e-14 71.6
MsaG004263 AT5G07100.4 43.939 132 70 2 68 199 77 204 7.98e-30 113
MsaG004263 AT5G07100.4 46.970 66 35 0 136 201 24 89 1.47e-14 71.6
MsaG004263 AT5G07100.5 43.939 132 70 2 68 199 77 204 7.98e-30 113
MsaG004263 AT5G07100.5 46.970 66 35 0 136 201 24 89 1.47e-14 71.6
MsaG004263 AT5G07100.3 43.939 132 70 2 68 199 77 204 7.98e-30 113
MsaG004263 AT5G07100.3 46.970 66 35 0 136 201 24 89 1.47e-14 71.6
MsaG004263 AT5G26170.1 50.476 105 51 1 90 194 68 171 1.20e-29 111
MsaG004263 AT5G41570.1 65.385 78 26 1 117 193 78 155 1.57e-29 111
MsaG004263 AT1G64000.1 61.628 86 30 1 108 193 89 171 1.94e-29 111
MsaG004263 AT1G13960.1 66.667 75 25 0 121 195 394 468 2.24e-29 117
MsaG004263 AT1G13960.1 60.000 60 23 1 136 195 229 287 6.19e-17 81.3
MsaG004263 AT2G03340.1 62.963 81 30 0 121 201 400 480 4.05e-29 116
MsaG004263 AT2G03340.1 61.667 60 22 1 136 195 250 308 5.79e-17 81.6
MsaG004263 AT5G07100.1 43.939 132 70 2 68 199 170 297 4.11e-29 113
MsaG004263 AT5G07100.1 46.970 66 35 0 136 201 117 182 3.24e-14 72.4
MsaG004263 AT4G26640.5 45.714 140 63 4 116 249 185 317 4.50e-28 112
MsaG004263 AT4G26640.5 54.286 70 31 1 136 205 35 103 5.95e-17 80.9
MsaG004263 AT4G26640.6 45.714 140 63 4 116 249 185 317 4.50e-28 112
MsaG004263 AT4G26640.6 54.286 70 31 1 136 205 35 103 5.95e-17 80.9
MsaG004263 AT4G26640.4 45.714 140 63 4 116 249 185 317 4.50e-28 112
MsaG004263 AT4G26640.4 54.286 70 31 1 136 205 35 103 5.95e-17 80.9
MsaG004263 AT4G26640.3 45.714 140 63 4 116 249 185 317 4.50e-28 112
MsaG004263 AT4G26640.3 54.286 70 31 1 136 205 35 103 5.95e-17 80.9
MsaG004263 AT4G26640.1 45.714 140 63 4 116 249 289 421 2.00e-27 111
MsaG004263 AT4G26640.1 54.286 70 31 1 136 205 139 207 9.98e-17 80.9
MsaG004263 AT4G26640.7 45.714 140 63 4 116 249 321 453 2.43e-27 111
MsaG004263 AT4G26640.7 54.286 70 31 1 136 205 171 239 1.14e-16 80.5
MsaG004263 AT4G26640.2 45.714 140 63 4 116 249 361 493 2.67e-27 111
MsaG004263 AT4G26640.2 54.286 70 31 1 136 205 211 279 1.11e-16 80.9
MsaG004263 AT3G01080.2 56.977 86 37 0 110 195 318 403 2.68e-27 110
MsaG004263 AT3G01080.2 53.030 66 30 1 136 201 205 269 1.24e-15 77.4
MsaG004263 AT2G38470.1 55.056 89 40 0 120 208 346 434 2.90e-27 111
MsaG004263 AT2G38470.1 58.333 60 24 1 136 195 184 242 5.33e-15 75.5
MsaG004263 AT3G01080.1 56.977 86 37 0 110 195 280 365 2.96e-27 110
MsaG004263 AT3G01080.1 53.030 66 30 1 136 201 167 231 1.26e-15 77.0
MsaG004263 AT2G21900.1 44.340 106 55 2 96 197 65 170 8.41e-27 104
MsaG004263 AT2G46130.2 61.039 77 26 1 117 193 11 83 1.41e-26 101
MsaG004263 AT5G56270.1 60.526 76 30 0 120 195 471 546 2.23e-25 106
MsaG004263 AT5G56270.1 52.778 72 31 2 136 207 273 341 5.92e-16 78.6
MsaG004263 AT4G26440.1 52.809 89 42 0 117 205 353 441 4.94e-25 105
MsaG004263 AT4G26440.1 50.725 69 33 1 136 204 178 245 2.60e-15 76.6
MsaG004263 AT5G64810.1 39.286 112 66 1 83 194 59 168 1.87e-24 98.2
MsaG004263 AT2G30250.1 57.500 80 34 0 120 199 312 391 5.23e-24 100
MsaG004263 AT2G30250.1 44.828 87 39 2 137 215 167 252 2.70e-13 70.1
MsaG004263 AT2G04880.2 57.534 73 31 0 123 195 270 342 2.09e-23 100
MsaG004263 AT2G04880.2 57.377 61 25 1 135 195 110 169 1.31e-15 77.4
MsaG004263 AT2G04880.1 57.534 73 31 0 123 195 294 366 2.10e-23 100
MsaG004263 AT2G04880.1 37.778 135 75 4 66 195 39 169 9.73e-16 77.8
MsaG004263 AT1G55600.1 56.164 73 32 0 123 195 294 366 4.74e-22 96.3
MsaG004263 AT2G37260.3 43.810 105 56 2 91 192 221 325 1.11e-21 94.0
MsaG004263 AT2G37260.3 40.984 122 61 4 119 230 67 187 8.87e-16 77.0
MsaG004263 AT2G37260.2 43.810 105 56 2 91 192 219 323 1.17e-21 94.0
MsaG004263 AT2G37260.2 40.984 122 61 4 119 230 65 185 9.81e-16 77.0
MsaG004263 AT2G37260.1 43.810 105 56 2 91 192 301 405 2.34e-21 94.0
MsaG004263 AT2G37260.1 40.984 122 61 4 119 230 147 267 1.87e-15 76.6
MsaG004263 AT4G04450.2 51.948 77 36 1 120 195 182 258 3.36e-21 93.6
MsaG004263 AT1G80840.1 40.179 112 56 3 96 196 96 207 7.55e-21 90.9
MsaG004263 AT4G22070.4 51.948 77 36 1 120 195 281 357 7.86e-21 92.8
MsaG004263 AT4G22070.3 51.948 77 36 1 120 195 281 357 7.86e-21 92.8
MsaG004263 AT4G22070.2 51.948 77 36 1 120 195 281 357 7.86e-21 92.8
MsaG004263 AT4G22070.1 51.948 77 36 1 120 195 281 357 7.86e-21 92.8
MsaG004263 AT4G04450.1 51.948 77 36 1 120 195 276 352 8.13e-21 92.8
MsaG004263 AT1G62300.1 51.948 77 36 1 120 195 296 372 1.16e-20 92.4
MsaG004263 AT1G68150.1 45.263 95 51 1 102 195 201 295 1.76e-20 90.9
MsaG004263 AT1G30650.1 55.072 69 29 2 137 204 218 285 1.10e-19 89.0
MsaG004263 AT5G52830.1 55.072 69 29 2 137 204 166 233 1.20e-19 88.2
MsaG004263 AT2G34830.1 55.072 69 29 2 137 204 216 283 1.24e-19 89.0
MsaG004263 AT2G34830.2 55.072 69 29 2 137 204 225 292 1.26e-19 89.0
MsaG004263 AT4G31800.2 53.846 65 29 1 135 198 110 174 1.89e-19 85.9
MsaG004263 AT4G31800.1 53.846 65 29 1 135 198 175 239 3.09e-19 86.7
MsaG004263 AT5G43290.1 52.113 71 33 1 123 192 100 170 3.18e-19 85.9
MsaG004263 AT2G25000.2 45.882 85 39 2 135 218 102 180 3.45e-19 84.7
MsaG004263 AT2G25000.4 45.882 85 39 2 135 218 102 180 3.45e-19 84.7
MsaG004263 AT1G18860.1 49.351 77 38 1 120 195 223 299 4.54e-19 87.8
MsaG004263 AT2G25000.3 45.882 85 39 2 135 218 124 202 5.49e-19 84.7
MsaG004263 AT2G25000.1 45.882 85 39 2 135 218 145 223 6.76e-19 85.1
MsaG004263 AT5G45050.1 55.072 69 29 2 137 204 1181 1248 7.12e-19 87.8
MsaG004263 AT5G45050.2 55.072 69 29 2 137 204 1153 1220 7.16e-19 87.8
MsaG004263 AT5G45050.4 55.072 69 29 2 137 204 1042 1109 7.23e-19 87.4
MsaG004263 AT4G01720.1 49.351 77 38 1 120 195 223 299 7.31e-19 87.0
MsaG004263 AT4G01250.1 36.134 119 71 4 87 204 82 196 1.41e-18 84.3
MsaG004263 AT3G58710.2 35.714 140 72 4 69 198 2 133 2.24e-18 83.6
MsaG004263 AT5G15130.1 40.952 105 54 2 92 195 190 287 2.86e-18 85.5
MsaG004263 AT5G15130.2 40.952 105 54 2 92 195 148 245 3.18e-18 85.1
MsaG004263 AT4G30935.1 39.394 99 55 1 123 221 318 411 3.84e-18 84.7
MsaG004263 AT3G58710.1 35.075 134 82 3 69 198 2 134 5.03e-18 82.4
MsaG004263 AT1G29280.1 52.381 63 29 1 137 198 75 137 9.10e-18 81.6
MsaG004263 AT4G31550.2 44.156 77 42 1 117 192 226 302 6.05e-17 80.1
MsaG004263 AT4G31550.1 44.156 77 42 1 117 192 227 303 6.35e-17 80.1
MsaG004263 AT2G30590.1 43.421 76 42 1 119 193 296 371 7.30e-17 80.5
MsaG004263 AT2G23320.1 41.489 94 54 1 100 192 204 297 1.88e-16 79.0
MsaG004263 AT5G28650.1 35.833 120 75 2 83 201 210 328 6.63e-16 77.4
MsaG004263 AT3G01080.3 53.030 66 30 1 136 201 205 269 6.79e-16 77.4
MsaG004263 AT2G24570.1 38.835 103 61 2 96 197 204 305 7.50e-16 77.0
MsaG004263 AT4G23550.1 46.667 75 38 2 131 204 135 208 1.55e-15 76.3
MsaG004263 AT3G04670.1 40.000 90 53 1 113 201 239 328 2.04e-15 75.9
MsaG004263 AT1G69810.2 37.273 110 64 3 98 205 110 216 5.27e-15 74.7
MsaG004263 AT1G69810.1 40.909 88 50 2 120 205 187 274 6.03e-15 75.1
MsaG004263 AT5G45260.1 33.557 149 90 5 58 203 1135 1277 8.15e-15 75.5
MsaG004263 AT4G24240.1 40.426 94 53 2 100 192 247 338 1.07e-14 73.9
MsaG004263 AT1G66560.1 50.847 59 26 1 136 191 103 161 5.47e-14 70.9
MsaG004263 AT4G11070.2 37.500 112 59 3 91 191 56 167 2.02e-13 69.7
MsaG004263 AT4G11070.1 38.938 113 56 4 91 191 88 199 2.34e-13 69.7
MsaG004263 AT2G46400.1 37.615 109 64 2 86 191 55 162 2.64e-13 69.3
MsaG004263 AT3G56400.1 48.333 60 28 1 135 191 119 178 4.33e-13 68.9
MsaG004263 AT4G12020.6 44.118 68 37 1 134 201 466 532 1.38e-12 68.9
MsaG004263 AT4G12020.6 72.973 37 10 0 120 156 625 661 3.33e-12 67.8
MsaG004263 AT4G12020.8 44.118 68 37 1 134 201 466 532 1.38e-12 68.9
MsaG004263 AT4G12020.8 72.973 37 10 0 120 156 625 661 3.33e-12 67.8
MsaG004263 AT4G12020.10 44.118 68 37 1 134 201 466 532 1.45e-12 68.9
MsaG004263 AT4G12020.10 72.973 37 10 0 120 156 625 661 3.50e-12 67.8
MsaG004263 AT4G12020.4 44.118 68 37 1 134 201 466 532 1.47e-12 68.9
MsaG004263 AT4G12020.4 72.973 37 10 0 120 156 625 661 3.57e-12 67.4
MsaG004263 AT4G12020.3 44.118 68 37 1 134 201 466 532 1.49e-12 68.6
MsaG004263 AT4G12020.3 72.973 37 10 0 120 156 625 661 3.41e-12 67.8
MsaG004263 AT4G12020.7 44.118 68 37 1 134 201 466 532 1.55e-12 68.6
MsaG004263 AT4G12020.7 72.973 37 10 0 120 156 625 661 3.68e-12 67.4
MsaG004263 AT4G12020.2 44.118 68 37 1 134 201 466 532 1.60e-12 68.6
MsaG004263 AT4G12020.2 72.973 37 10 0 120 156 625 661 3.67e-12 67.4
MsaG004263 AT4G12020.1 44.118 68 37 1 134 201 466 532 1.62e-12 68.6
MsaG004263 AT4G12020.1 72.973 37 10 0 120 156 625 661 3.75e-12 67.4
MsaG004263 AT4G12020.9 44.118 68 37 1 134 201 466 532 1.62e-12 68.6
MsaG004263 AT4G12020.9 72.973 37 10 0 120 156 625 661 3.75e-12 67.4
MsaG004263 AT4G12020.5 44.118 68 37 1 134 201 399 465 1.65e-12 68.6
MsaG004263 AT4G12020.5 72.973 37 10 0 120 156 558 594 3.93e-12 67.4
MsaG004263 AT4G12020.11 44.118 68 37 1 134 201 466 532 1.93e-12 68.2
MsaG004263 AT4G12020.11 72.973 37 10 0 120 156 625 661 3.90e-12 67.4
MsaG004263 AT1G66600.1 50.000 60 27 1 135 191 102 161 3.95e-12 65.5
MsaG004263 AT1G80590.1 44.615 65 33 1 137 198 86 150 4.80e-12 65.1
MsaG004263 AT1G66550.2 50.000 58 26 1 137 191 104 161 5.31e-12 65.1
MsaG004263 AT1G66550.1 50.000 58 26 1 137 191 109 166 6.12e-12 65.1
MsaG004263 AT2G40740.3 35.922 103 58 2 136 230 182 284 1.40e-11 64.3
MsaG004263 AT2G40740.1 35.922 103 58 2 136 230 173 275 1.53e-11 64.3
MsaG004263 AT2G40750.1 35.185 108 58 3 92 191 107 210 1.56e-11 64.7
MsaG004263 AT5G24110.1 38.961 77 39 2 135 208 112 183 2.37e-11 63.9
MsaG004263 AT4G23810.1 49.153 59 27 1 136 191 158 216 5.56e-11 62.8
MsaG004263 AT5G01900.1 47.368 57 27 1 137 190 111 167 6.28e-11 62.0

Find 66 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTCTTCTTTAGGGTTTA+TGG 0.122782 1:-67551046 MsaT004263.1:CDS
AAGGGACAACTGCATTTCTT+AGG 0.222393 1:-67549689 MsaT004263.1:CDS
TCTTCCTCATCTTTGCTAAA+TGG 0.233660 1:-67551111 MsaT004263.1:CDS
ACTGCATTTCTTAGGGATAA+TGG 0.268383 1:-67549681 MsaT004263.1:CDS
TTGAAAGAAGTTCTTCTTTA+GGG 0.269989 1:-67551053 MsaT004263.1:CDS
AATGATGAAGAATTGTTATA+AGG 0.284749 1:+67549759 None:intergenic
GTTGAAAGAAGTTCTTCTTT+AGG 0.298040 1:-67551054 MsaT004263.1:CDS
CTGCATTTCTTAGGGATAAT+GGG 0.307370 1:-67549680 MsaT004263.1:CDS
TAGGAGTTGCAGGTTGTTGC+TGG 0.317655 1:+67550905 None:intergenic
ACTCTCTCTTGGGCAGTAAA+AGG 0.341688 1:+67549726 None:intergenic
ATGTCCCGTTCCGCCTTTGC+CGG 0.342549 1:-67549936 MsaT004263.1:CDS
AAGTAGTTGTTGATGTTGAT+AGG 0.343522 1:+67549809 None:intergenic
TAGGGATAATGGGCTACTTC+AGG 0.363679 1:-67549670 MsaT004263.1:CDS
AACTCCGGCAAAGGCGGAAC+GGG 0.372094 1:+67549932 None:intergenic
TATGGAGTTACTTGGTGGTC+AGG 0.386026 1:-67551028 MsaT004263.1:CDS
TTTGTCATGAAAGCAAATCT+TGG 0.391626 1:+67550282 None:intergenic
TACAAAGCTGTACTCTCTCT+TGG 0.398729 1:+67549715 None:intergenic
GAACAAGAGTTAGGAGTTGC+AGG 0.406933 1:+67550895 None:intergenic
GATGAAATCGAACAAGAGTT+AGG 0.413947 1:+67550886 None:intergenic
TATGAGTAGTACCTTGGAAA+AGG 0.414311 1:+67550189 None:intergenic
TTAGGGTTTATGGAGTTACT+TGG 0.415443 1:-67551036 MsaT004263.1:CDS
AGAGTACAGCTTTGTAATCA+AGG 0.440017 1:-67549708 MsaT004263.1:CDS
ACCACCCGCCGGTGTAGTCT+CGG 0.441892 1:-67549901 MsaT004263.1:CDS
GGATTTCCAGCTACTAACTT+TGG 0.448624 1:-67549876 MsaT004263.1:CDS
ATGATGAAGAATTGTTATAA+GGG 0.461940 1:+67549760 None:intergenic
AGGGACAACTGCATTTCTTA+GGG 0.464209 1:-67549688 MsaT004263.1:CDS
ATGAGTAGTACCTTGGAAAA+GGG 0.468338 1:+67550190 None:intergenic
ACTGAACCAAAGTTAGTAGC+TGG 0.485678 1:+67549870 None:intergenic
GGGTTTATGGAGTTACTTGG+TGG 0.488572 1:-67551033 MsaT004263.1:CDS
ACAAAGCTGTACTCTCTCTT+GGG 0.501900 1:+67549716 None:intergenic
AAGGCGGAACGGGACATAGT+TGG 0.509083 1:+67549942 None:intergenic
ATTGTAGTCACAACATATGA+AGG 0.530444 1:-67549984 MsaT004263.1:CDS
TTTGACCGTACTTTCTCCAT+CGG 0.538876 1:+67550229 None:intergenic
AGTAGTTGTTGATGTTGATA+GGG 0.541403 1:+67549810 None:intergenic
TATGTTGTGACTACAATGCT+TGG 0.546996 1:+67549990 None:intergenic
TCATATGGAGAAGAAAGAGA+TGG 0.554668 1:-67551169 None:intergenic
CATATGGAGAAGAAAGAGAT+GGG 0.559126 1:-67551168 MsaT004263.1:CDS
CCACCCGCCGGTGTAGTCTC+GGG 0.562733 1:-67549900 MsaT004263.1:CDS
CTTGACATTACATGCAGCAG+TGG 0.566999 1:+67550040 None:intergenic
GAACGGGACATAGTTGGACT+TGG 0.567628 1:+67549948 None:intergenic
TTGGACTTGGATGTGTGTGT+TGG 0.571102 1:+67549961 None:intergenic
GGATACCGATGGAGAAAGTA+CGG 0.573593 1:-67550234 MsaT004263.1:CDS
GAGTACAGCTTTGTAATCAA+GGG 0.578972 1:-67549707 MsaT004263.1:CDS
GAGGTTGATCATCTGGAAGA+TGG 0.579335 1:-67550255 MsaT004263.1:CDS
GAGACTACACCGGCGGGTGG+TGG 0.579641 1:+67549903 None:intergenic
CAGACATGGTTGGTACATCA+AGG 0.580908 1:+67550992 None:intergenic
GTTATAAGGGTGATTCAAAG+AGG 0.581408 1:+67549773 None:intergenic
TGGTATTTGAACTCCGGCAA+AGG 0.581607 1:+67549923 None:intergenic
TCTTCTTTCAACATATGTGA+AGG 0.587303 1:+67549639 None:intergenic
GAACTCCGGCAAAGGCGGAA+CGG 0.591004 1:+67549931 None:intergenic
ATAACCATTTAGCAAAGATG+AGG 0.592773 1:+67551107 None:intergenic
GGGTGGTGGTATTTGAACTC+CGG 0.600942 1:+67549917 None:intergenic
CCCGCCGGTGTAGTCTCGGG+TGG 0.601478 1:-67549897 MsaT004263.1:CDS
GGGTGTAAGTGTGAAGAGTG+AGG 0.617036 1:-67551148 MsaT004263.1:CDS
ATCTGGAAGATGGATACCGA+TGG 0.620143 1:-67550245 MsaT004263.1:CDS
CCACCCGAGACTACACCGGC+GGG 0.621520 1:+67549897 None:intergenic
TGAGTCACTGCAGACATGGT+TGG 0.623255 1:+67550982 None:intergenic
CCCGAGACTACACCGGCGGG+TGG 0.635933 1:+67549900 None:intergenic
AAATCCACCCGAGACTACAC+CGG 0.638946 1:+67549893 None:intergenic
TATTTGAACTCCGGCAAAGG+CGG 0.643870 1:+67549926 None:intergenic
TCCACCCGAGACTACACCGG+CGG 0.646130 1:+67549896 None:intergenic
ATGGTTGGTACATCAAGGAG+AGG 0.679075 1:+67550997 None:intergenic
GTTCAAATACCACCACCCGC+CGG 0.680657 1:-67549912 MsaT004263.1:CDS
ATTATGAGTCACTGCAGACA+TGG 0.710153 1:+67550978 None:intergenic
AAGCGTGTTTGATTTCTGTG+AGG 0.717658 1:-67551076 MsaT004263.1:CDS
ATGTAATGTCAAGAAACGTG+TGG 0.745114 1:-67550030 MsaT004263.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 67549635 67551187 67549635 ID=MsaG004263
Chr1 mRNA 67549635 67551187 67549635 ID=MsaT004263.1;Parent=MsaG004263
Chr1 exon 67549635 67550079 67549635 ID=MsaT004263.1.exon3;Parent=MsaT004263.1
Chr1 CDS 67549635 67550079 67549635 ID=cds.MsaT004263.1;Parent=MsaT004263.1
Chr1 exon 67550201 67550331 67550201 ID=MsaT004263.1.exon2;Parent=MsaT004263.1
Chr1 CDS 67550201 67550331 67550201 ID=cds.MsaT004263.1;Parent=MsaT004263.1
Chr1 exon 67550852 67551187 67550852 ID=MsaT004263.1.exon1;Parent=MsaT004263.1
Chr1 CDS 67550852 67551187 67550852 ID=cds.MsaT004263.1;Parent=MsaT004263.1
Gene Sequence

>MsaT004263.1

ATGGAGAAGAAAGAGATGGGTGTAAGTGTGAAGAGTGAGGATGTTATTGTTGATTCTTCCTCATCTTTGCTAAATGGTTATCAATTTTCAAGCGTGTTTGATTTCTGTGAGGTTGAAAGAAGTTCTTCTTTAGGGTTTATGGAGTTACTTGGTGGTCAGGACTATACTCCTCTCCTTGATGTACCAACCATGTCTGCAGTGACTCATAATCACAATACAGTTAAATCTTCATCTGAAAAAGAGTGTTCTGAGGTTTTGAACCAGCAACAACCTGCAACTCCTAACTCTTGTTCGATTTCATCTGCATCTAGTGAAGCAGTCAATGATAATAAGATTAAGACAAATCTAAAGAGACAGAGAGAACCAAGATTTGCTTTCATGACAAAAAGCGAGGTTGATCATCTGGAAGATGGATACCGATGGAGAAAGTACGGTCAAAAAGCTGTCAAAAATAGCCCTTTTCCAAGGAGCTACTATCGTTGCACCACTGCTGCATGTAATGTCAAGAAACGTGTGGAACGTTCTTACACTGATCCAAGCATTGTAGTCACAACATATGAAGGCCAACACACACATCCAAGTCCAACTATGTCCCGTTCCGCCTTTGCCGGAGTTCAAATACCACCACCCGCCGGTGTAGTCTCGGGTGGATTTCCAGCTACTAACTTTGGTTCAGTTTTGCAAGGAAACTACTTATCACAATATCATCAACAACCCTATCAACATCAACAACTACTTGTTAATACATTGTCCTCTTTGAATCACCCTTATAACAATTCTTCATCATTCAAGAATTCACCTTTTACTGCCCAAGAGAGAGTACAGCTTTGTAATCAAGGGACAACTGCATTTCTTAGGGATAATGGGCTACTTCAGGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG
Protein sequence

>MsaT004263.1

MEKKEMGVSVKSEDVIVDSSSSLLNGYQFSSVFDFCEVERSSSLGFMELLGGQDYTPLLDVPTMSAVTHNHNTVKSSSEKECSEVLNQQQPATPNSCSISSASSEAVNDNKIKTNLKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTAACNVKKRVERSYTDPSIVVTTYEGQHTHPSPTMSRSAFAGVQIPPPAGVVSGGFPATNFGSVLQGNYLSQYHQQPYQHQQLLVNTLSSLNHPYNNSSSFKNSPFTAQERVQLCNQGTTAFLRDNGLLQDVVPSHMLKEE*