AlfalfaGEDB | MsaG004297

M. sativa ssp. caerulea / MsaG004297

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004297	XP_039685751.1	93.817	372	10	4	1	360	1	371	0.0	695

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004297	sp\|O22264\|MYB12_ARATH	37.783	397	184	14	1	360	1	371	1.15e-63	210

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004297	A0A396JRX5	93.817	372	10	4	1	360	1	371	0.0	695

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TFs/TRs:

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Gene ID	Type	Classification
MsaG004297	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000015	MsaG004297	0.816000	1.201619e-51	2.382382e-49
MsaG000030	MsaG004297	0.827999	2.050752e-54	5.607849e-52
MsaG000045	MsaG004297	0.848843	8.975812e-60	4.676381e-57
MsaG000062	MsaG004297	0.847378	2.267107e-59	1.124354e-56
MsaG000070	MsaG004297	0.828021	2.026066e-54	5.543760e-52
MsaG000083	MsaG004297	0.913569	1.302243e-83	1.560762e-79
MsaG000110	MsaG004297	0.808843	4.326558e-50	7.185417e-48
MsaG000113	MsaG004297	0.910182	6.034851e-82	5.761618e-78
MsaG000121	MsaG004297	0.800135	2.776497e-48	3.765354e-46
MsaG000127	MsaG004297	0.857306	3.476657e-62	2.443166e-59

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004297	MtrunA17_Chr1g0194951	93.817	372	10	4	1	360	1	371	0.0	695
MsaG004297	MtrunA17_Chr7g0269831	43.832	381	165	11	1	358	1	355	8.78e-84	258
MsaG004297	MtrunA17_Chr4g0068061	55.307	179	56	4	1	164	1	170	1.01e-60	198
MsaG004297	MtrunA17_Chr7g0275911	61.475	122	37	1	1	112	1	122	4.07e-51	171
MsaG004297	MtrunA17_Chr8g0346561	62.069	116	34	1	1	106	1	116	4.87e-49	167
MsaG004297	MtrunA17_Chr4g0070641	59.677	124	40	1	1	114	1	124	1.52e-48	161
MsaG004297	MtrunA17_Chr4g0070611	59.677	124	40	1	1	114	1	124	2.79e-48	165
MsaG004297	MtrunA17_Chr1g0187761	58.647	133	42	2	1	120	1	133	1.24e-47	162
MsaG004297	MtrunA17_Chr7g0217741	56.296	135	49	1	1	125	1	135	2.13e-47	162
MsaG004297	MtrunA17_Chr4g0042671	58.915	129	43	1	1	119	1	129	5.93e-47	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004297	AT2G47460.1	37.783	397	184	14	1	360	1	371	1.17e-64	210
MsaG004297	AT5G49330.1	60.355	169	40	2	1	142	1	169	1.59e-63	206
MsaG004297	AT3G62610.1	46.371	248	109	4	1	232	1	240	2.96e-56	187
MsaG004297	AT3G61250.1	57.031	128	45	1	1	118	1	128	1.62e-47	163
MsaG004297	AT5G15310.4	56.589	129	46	1	1	119	1	129	5.63e-47	160
MsaG004297	AT1G35515.1	55.396	139	48	2	1	125	1	139	7.92e-47	159
MsaG004297	AT5G15310.1	56.589	129	46	1	1	119	1	129	1.29e-46	161
MsaG004297	AT5G15310.2	56.589	129	46	1	1	119	1	129	1.52e-46	161
MsaG004297	AT2G31180.1	61.207	116	35	1	1	106	1	116	2.42e-46	159
MsaG004297	AT1G06180.1	59.829	117	37	1	1	107	1	117	7.64e-46	157

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Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAATGATTTGATTGCT+TGG	0.355944	1:+68007241	MsaT004297.1:CDS
AACTATAGAGCCAAAGATCA+TGG	0.469285	1:+68006534	MsaT004297.1:CDS
AAGACTGTCTCCATCATCAT+TGG	0.394370	1:-68006968	None:intergenic
AAGTACTCATGTCAAGACAA+TGG	0.614680	1:+68006852	MsaT004297.1:CDS
AAGTCAAGAGAGAGAAATGA+TGG	0.429496	1:+68006915	MsaT004297.1:CDS
AAGTCAATGGAGAAGGTTCT+TGG	0.351813	1:+68002248	MsaT004297.1:CDS
AATGTGGTAAAACAAGTCGT+TGG	0.554279	1:+68006578	MsaT004297.1:CDS
AATTATGTGACGACATCTTA+GGG	0.454312	1:+68006779	MsaT004297.1:CDS
AATTGTTTGCTGGAAACAAG+TGG	0.575262	1:+68006877	MsaT004297.1:CDS
ACAACTTCACAATCTAGTGA+AGG	0.654135	1:-68006691	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	68002160	68007275	68002160	ID=MsaG004297
Chr1	mRNA	68002160	68007275	68002160	ID=MsaT004297.1;Parent=MsaG004297
Chr1	exon	68002160	68002272	68002160	ID=MsaT004297.1.exon1;Parent=MsaT004297.1
Chr1	CDS	68002160	68002272	68002160	ID=cds.MsaT004297.1;Parent=MsaT004297.1
Chr1	exon	68002959	68003078	68002959	ID=MsaT004297.1.exon2;Parent=MsaT004297.1
Chr1	CDS	68002959	68003078	68002959	ID=cds.MsaT004297.1;Parent=MsaT004297.1
Chr1	exon	68006426	68007275	68006426	ID=MsaT004297.1.exon3;Parent=MsaT004297.1
Chr1	CDS	68006426	68007275	68006426	ID=cds.MsaT004297.1;Parent=MsaT004297.1

Gene Sequence

>MsaT004297.1

ATGGGAAGAACTCCTTGTTGTGAGAAAGTAGGGCTGAAAAGGGGTAGATGGACAACAGAAGAAGATGAGATCTTGTCAAAATACATTCAAGTCAATGGAGAAGGTTCTTGGAGGTGCGGGAAGAGTTGTAGACTAAGATGGATTAACTATTTGAGAACTGACCTCAAAAGAGGAAACATATCTGCTCAAGAGGAAGACACCATTGTGAAGCTCCACACTACTTATGGTAACAGGTGGTCCATGATAGCTAGCCACTTGCCAGGAAGAACGGACAATGAAATTAAAAACCATTGGAATTCTCACCTCAGCAGAAAAATCTACAGTTTCTCAAAAATTTCCACAACTATAGAGCCAAAGATCATGGATGTTCGTCCTCCTAAGCGTAAATGTGGTAAAACAAGTCGTTGGGCCATGAAGAAGAACAAAAGCTACAAAAAACAAACCGTTATTAATACTAAAGAAAATTATATTGAACCAGAAGTTCAAATTCCACGTACTCCTTCACTAGATTGTGAAGTTGTTACAGAGAAAATAATTGATGACGTGGAGGTAAAAACAACACATGATGAGAAAGAAACAACGTATGAATTATGTGACGACATCTTAGGGCTGAGTGAGTTGTTAGATGACATTAATGAAGACAGTGGGGCATTGTGCATAAGTACTCATGTCAAGACAATGGAAAATTGTTTGCTGGAAACAAGTGGGTCTGTTTCAAATTTAAGTCAAGAGAGAGAAATGATGGGTGATGGAGGTGAAGAAAATGAAAGAACAACCAATGATGATGGAGACAGTCTTAAATATAATTTGGTTTCATGTGAAGACCCCGAAAGTAGTGTGAACCAAACCTCAAATAACGGTGAAAGTGGAGAATGGTCTTTGAATATGGGTTTAGATTTGGATGATAAATGGAATTGGGAGAGTGTGATGGAATTTAGTGTTGATGATAATAGTAATAGGGAGCATAAAGATAATCTTTTGAATTGGTTGTGTGAAGATGATGATTGGGAAGGTGATAGTAAGAGTTTGGGAGAGATAGATCCTCAGAAACAAAATGATTTGATTGCTTGGTTTCTCTCTTGA

Protein sequence

>MsaT004297.1

MGRTPCCEKVGLKRGRWTTEEDEILSKYIQVNGEGSWRCGKSCRLRWINYLRTDLKRGNISAQEEDTIVKLHTTYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYSFSKISTTIEPKIMDVRPPKRKCGKTSRWAMKKNKSYKKQTVINTKENYIEPEVQIPRTPSLDCEVVTEKIIDDVEVKTTHDEKETTYELCDDILGLSELLDDINEDSGALCISTHVKTMENCLLETSGSVSNLSQEREMMGDGGEENERTTNDDGDSLKYNLVSCEDPESSVNQTSNNGESGEWSLNMGLDLDDKWNWESVMEFSVDDNSNREHKDNLLNWLCEDDDWEGDSKSLGEIDPQKQNDLIAWFLS*