Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG004371 | XP_024639704.1 | 98.633 | 439 | 5 | 1 | 1 | 438 | 32 | 470 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG004371 | sp|Q84W91|C3H32_ARATH | 66.742 | 445 | 130 | 8 | 1 | 438 | 32 | 465 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| MsaG004371 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG004371 | MtrunA17_Chr1g0195891 | 99.359 | 312 | 1 | 1 | 1 | 311 | 32 | 343 | 0.0 | 624 |
| MsaG004371 | MtrunA17_Chr1g0195891 | 53.947 | 76 | 33 | 1 | 263 | 336 | 91 | 166 | 3.32e-21 | 94.4 |
| MsaG004371 | MtrunA17_Chr4g0066941 | 55.076 | 463 | 153 | 9 | 12 | 425 | 41 | 497 | 3.69e-143 | 418 |
| MsaG004371 | MtrunA17_Chr2g0286151 | 52.969 | 421 | 169 | 10 | 12 | 410 | 42 | 455 | 1.08e-126 | 375 |
| MsaG004371 | MtrunA17_Chr7g0249221 | 48.619 | 362 | 170 | 8 | 1 | 352 | 11 | 366 | 1.13e-107 | 324 |
| MsaG004371 | MtrunA17_Chr5g0438891 | 36.923 | 390 | 209 | 10 | 14 | 399 | 36 | 392 | 9.77e-77 | 244 |
| MsaG004371 | MtrunA17_Chr5g0438891 | 44.706 | 85 | 46 | 1 | 4 | 88 | 252 | 335 | 1.83e-15 | 77.8 |
| MsaG004371 | MtrunA17_Chr5g0438891 | 38.614 | 101 | 50 | 2 | 259 | 354 | 32 | 125 | 2.66e-15 | 77.4 |
| MsaG004371 | MtrunA17_Chr4g0058011 | 36.207 | 348 | 168 | 13 | 10 | 340 | 227 | 537 | 2.87e-61 | 208 |
| MsaG004371 | MtrunA17_Chr4g0058011 | 41.880 | 117 | 65 | 1 | 59 | 175 | 458 | 571 | 1.41e-21 | 97.4 |
| MsaG004371 | MtrunA17_Chr3g0116431 | 34.985 | 343 | 177 | 9 | 8 | 336 | 165 | 475 | 3.80e-59 | 201 |
| MsaG004371 | MtrunA17_Chr3g0116431 | 47.368 | 114 | 54 | 3 | 58 | 170 | 399 | 507 | 1.92e-20 | 93.6 |
| MsaG004371 | MtrunA17_Chr3g0116431 | 35.000 | 100 | 58 | 2 | 263 | 359 | 171 | 266 | 8.55e-13 | 70.1 |
| MsaG004371 | MtrunA17_Chr1g0195901 | 96.970 | 99 | 3 | 0 | 340 | 438 | 1 | 99 | 3.72e-56 | 181 |
| MsaG004371 | MtrunA17_Chr8g0356241 | 33.803 | 355 | 197 | 9 | 8 | 336 | 132 | 474 | 6.04e-56 | 193 |
| MsaG004371 | MtrunA17_Chr8g0356241 | 36.025 | 161 | 56 | 3 | 22 | 136 | 317 | 476 | 1.97e-23 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG004371 | AT2G47850.1 | 66.742 | 445 | 130 | 8 | 1 | 438 | 32 | 465 | 0.0 | 553 |
| MsaG004371 | AT2G47850.3 | 66.742 | 445 | 130 | 8 | 1 | 438 | 32 | 465 | 0.0 | 553 |
| MsaG004371 | AT2G47850.2 | 61.573 | 445 | 127 | 9 | 1 | 438 | 32 | 439 | 1.01e-170 | 486 |
| MsaG004371 | AT2G47850.4 | 63.818 | 351 | 112 | 7 | 95 | 438 | 1 | 343 | 2.09e-136 | 395 |
| MsaG004371 | AT2G47850.4 | 53.571 | 84 | 39 | 0 | 52 | 135 | 157 | 240 | 1.40e-23 | 101 |
| MsaG004371 | AT2G47850.4 | 41.414 | 99 | 51 | 2 | 12 | 103 | 162 | 260 | 2.42e-16 | 80.5 |
| MsaG004371 | AT5G18550.3 | 49.543 | 438 | 184 | 13 | 12 | 431 | 14 | 432 | 1.08e-123 | 366 |
| MsaG004371 | AT5G18550.1 | 49.543 | 438 | 184 | 13 | 12 | 431 | 46 | 464 | 1.43e-123 | 367 |
| MsaG004371 | AT5G18550.4 | 53.077 | 390 | 148 | 11 | 12 | 383 | 46 | 418 | 4.27e-123 | 365 |
| MsaG004371 | AT5G18550.2 | 48.046 | 435 | 182 | 13 | 12 | 431 | 46 | 451 | 1.52e-116 | 348 |
| MsaG004371 | AT3G06410.1 | 53.704 | 378 | 149 | 9 | 1 | 359 | 33 | 403 | 2.68e-115 | 346 |
| MsaG004371 | AT3G02830.1 | 46.409 | 362 | 164 | 7 | 1 | 352 | 21 | 362 | 2.19e-102 | 310 |
| MsaG004371 | AT3G02830.2 | 46.409 | 362 | 164 | 7 | 1 | 352 | 1 | 342 | 3.67e-102 | 309 |
| MsaG004371 | AT5G16540.1 | 43.223 | 391 | 152 | 13 | 1 | 376 | 22 | 357 | 1.46e-90 | 279 |
| MsaG004371 | AT5G16540.1 | 37.107 | 159 | 78 | 6 | 263 | 412 | 84 | 229 | 2.28e-20 | 92.8 |
| MsaG004371 | AT5G16540.3 | 42.054 | 409 | 163 | 14 | 1 | 390 | 1 | 354 | 1.73e-90 | 278 |
| MsaG004371 | AT5G16540.3 | 37.107 | 159 | 78 | 6 | 263 | 412 | 63 | 208 | 1.87e-20 | 92.8 |
| MsaG004371 | AT5G16540.2 | 41.645 | 389 | 154 | 13 | 1 | 376 | 22 | 350 | 2.05e-84 | 263 |
| MsaG004371 | AT5G16540.2 | 37.107 | 159 | 78 | 6 | 263 | 412 | 84 | 229 | 1.69e-20 | 93.2 |
| MsaG004371 | AT5G16540.4 | 43.614 | 321 | 119 | 11 | 1 | 311 | 1 | 269 | 2.24e-75 | 237 |
| MsaG004371 | AT5G16540.4 | 37.107 | 159 | 78 | 6 | 263 | 412 | 63 | 208 | 9.22e-21 | 92.0 |
| MsaG004371 | AT5G16540.4 | 43.878 | 98 | 50 | 2 | 263 | 359 | 18 | 111 | 5.47e-17 | 81.3 |
| MsaG004371 | AT1G04990.1 | 36.494 | 348 | 161 | 9 | 4 | 336 | 31 | 333 | 4.34e-64 | 212 |
| MsaG004371 | AT1G04990.6 | 36.494 | 348 | 161 | 9 | 4 | 336 | 31 | 333 | 4.34e-64 | 212 |
| MsaG004371 | AT1G04990.2 | 36.494 | 348 | 161 | 9 | 4 | 336 | 31 | 333 | 4.34e-64 | 212 |
| MsaG004371 | AT3G48440.1 | 35.511 | 352 | 192 | 9 | 14 | 353 | 107 | 435 | 4.03e-62 | 208 |
| MsaG004371 | AT3G48440.1 | 33.858 | 127 | 34 | 2 | 260 | 336 | 104 | 230 | 2.88e-15 | 78.2 |
| MsaG004371 | AT3G48440.1 | 39.241 | 79 | 45 | 2 | 11 | 87 | 340 | 417 | 3.92e-11 | 65.1 |
| MsaG004371 | AT2G32930.3 | 36.338 | 355 | 179 | 11 | 14 | 358 | 14 | 331 | 1.69e-58 | 198 |
| MsaG004371 | AT2G32930.2 | 36.338 | 355 | 179 | 11 | 14 | 358 | 41 | 358 | 1.91e-58 | 198 |
| MsaG004371 | AT1G04990.5 | 34.682 | 346 | 150 | 9 | 4 | 336 | 31 | 313 | 2.50e-56 | 191 |
| MsaG004371 | AT1G04990.5 | 38.043 | 92 | 56 | 1 | 263 | 354 | 44 | 134 | 6.97e-14 | 73.2 |
| MsaG004371 | AT5G63260.1 | 35.429 | 350 | 189 | 11 | 14 | 352 | 98 | 421 | 5.16e-54 | 186 |
| MsaG004371 | AT5G63260.1 | 42.718 | 103 | 54 | 1 | 55 | 157 | 327 | 424 | 2.13e-18 | 87.4 |
| MsaG004371 | AT5G63260.1 | 32.394 | 142 | 41 | 3 | 262 | 354 | 97 | 232 | 3.24e-15 | 77.8 |
| MsaG004371 | AT5G63260.1 | 38.462 | 78 | 47 | 1 | 11 | 87 | 328 | 405 | 4.11e-12 | 68.2 |
| MsaG004371 | AT2G32930.1 | 35.493 | 355 | 178 | 12 | 14 | 358 | 41 | 354 | 2.37e-53 | 185 |
| MsaG004371 | AT3G12680.1 | 34.012 | 344 | 191 | 8 | 14 | 336 | 171 | 499 | 4.87e-52 | 183 |
| MsaG004371 | AT3G12680.1 | 41.860 | 172 | 71 | 4 | 12 | 157 | 220 | 388 | 4.17e-34 | 134 |
| MsaG004371 | AT3G12680.1 | 39.024 | 164 | 58 | 4 | 15 | 136 | 338 | 501 | 4.90e-27 | 114 |
| MsaG004371 | AT3G12680.1 | 46.429 | 84 | 37 | 1 | 13 | 88 | 416 | 499 | 2.71e-17 | 84.7 |
| MsaG004371 | AT3G12680.1 | 42.169 | 83 | 39 | 2 | 262 | 336 | 170 | 251 | 2.84e-13 | 72.0 |
| MsaG004371 | AT5G63260.2 | 33.880 | 366 | 189 | 11 | 14 | 352 | 98 | 437 | 1.09e-51 | 181 |
| MsaG004371 | AT5G63260.2 | 44.000 | 100 | 51 | 1 | 58 | 157 | 346 | 440 | 2.19e-18 | 87.4 |
| MsaG004371 | AT5G63260.2 | 45.652 | 92 | 42 | 2 | 265 | 354 | 163 | 248 | 8.25e-18 | 85.9 |
| MsaG004371 | AT5G63260.2 | 38.462 | 78 | 47 | 1 | 11 | 87 | 344 | 421 | 4.31e-12 | 68.2 |
| MsaG004371 | AT1G04990.3 | 35.714 | 280 | 125 | 7 | 69 | 336 | 16 | 252 | 1.85e-44 | 158 |
| MsaG004371 | AT1G04990.3 | 48.571 | 70 | 36 | 0 | 25 | 94 | 17 | 86 | 7.71e-18 | 84.7 |
| MsaG004371 | AT1G04990.3 | 38.017 | 121 | 61 | 4 | 47 | 156 | 165 | 282 | 9.28e-14 | 72.4 |
| MsaG004371 | AT1G04990.4 | 33.453 | 278 | 114 | 7 | 69 | 336 | 16 | 232 | 4.70e-37 | 137 |
| MsaG004371 | AT1G04990.4 | 48.571 | 70 | 36 | 0 | 25 | 94 | 17 | 86 | 9.83e-18 | 84.0 |
| MsaG004371 | AT1G48195.1 | 51.250 | 80 | 37 | 1 | 258 | 335 | 1 | 80 | 3.63e-20 | 85.1 |
| MsaG004371 | AT1G48195.1 | 52.000 | 75 | 36 | 0 | 59 | 133 | 6 | 80 | 1.42e-18 | 80.5 |
Find 152 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGGGTTGTTCCATTTCC+TGG | 0.149575 | 1:+68842102 | MsaT004371.1:CDS |
| ACCGGTTCACCGGGTCTTTC+AGG | 0.153591 | 1:-68842421 | None:intergenic |
| AAAACTGGAACCTGTAAATT+TGG | 0.163743 | 1:+68841642 | MsaT004371.1:CDS |
| AAAACGGGGCAGTGCAAATT+TGG | 0.196691 | 1:+68841874 | MsaT004371.1:CDS |
| AGAACTGGGGACTGTAAATT+TGG | 0.217131 | 1:+68842460 | MsaT004371.1:CDS |
| CAAGCTCCACTAAATATTTA+TGG | 0.224349 | 1:+68841714 | MsaT004371.1:CDS |
| CTTCAACATCTTCAGAATTT+CGG | 0.252360 | 1:+68844823 | MsaT004371.1:CDS |
| CAAAATGGGCACTGCAAGTT+TGG | 0.265662 | 1:+68844681 | MsaT004371.1:CDS |
| CTGGCGCGCAACCTGCTGTT+GGG | 0.306993 | 1:+68842278 | MsaT004371.1:CDS |
| ACAAGACGCGCCAAATTTAC+AGG | 0.307599 | 1:-68841652 | None:intergenic |
| GAAGAGGGCAGAGGAGTATA+AGG | 0.330274 | 1:-68842358 | None:intergenic |
| TCCTGAAGTGTGTTTCCTCC+AGG | 0.341736 | 1:-68842388 | None:intergenic |
| GGAGATAACACAGGGCTTAC+AGG | 0.346214 | 1:-68842256 | None:intergenic |
| TCCTGGATGGAGTCCTTATT+CGG | 0.346285 | 1:+68842119 | MsaT004371.1:CDS |
| CTGCCCTCTTCTCCTGGCCC+TGG | 0.347929 | 1:+68842370 | MsaT004371.1:CDS |
| GTTGGGGCTACTTCTCTTTA+CGG | 0.355067 | 1:+68842295 | MsaT004371.1:CDS |
| TGCTCCTATTATTTGAAAAC+GGG | 0.359605 | 1:+68841859 | MsaT004371.1:CDS |
| CATTCATCTGGAAATGGTTC+TGG | 0.366848 | 1:+68844888 | MsaT004371.1:CDS |
| TCATATGTACAAGGGGCTTA+TGG | 0.368244 | 1:+68842063 | MsaT004371.1:CDS |
| CCAACAGCAGGTTGCGCGCC+AGG | 0.368459 | 1:-68842277 | None:intergenic |
| CGACCACTTCTTAGTCCCTT+TGG | 0.371098 | 1:+68842526 | MsaT004371.1:CDS |
| TATGTGTCTCTTACCGAATA+AGG | 0.372520 | 1:-68842132 | None:intergenic |
| TGCCAATACTATATGAGAAC+TGG | 0.381157 | 1:+68842445 | MsaT004371.1:CDS |
| CATTCTGGCTGAAAAGGAAT+TGG | 0.388564 | 1:-68844865 | None:intergenic |
| ACTCCTCTGCCCTCTTCTCC+TGG | 0.392892 | 1:+68842364 | MsaT004371.1:CDS |
| GGAGGTTCGCCAAGCCTCTC+CGG | 0.397154 | 1:-68841495 | None:intergenic |
| AGAGTCGAACCGGTCGTAAT+GGG | 0.398417 | 1:-68841740 | None:intergenic |
| TGTGCTTATTATATGAGAAC+CGG | 0.398738 | 1:+68840970 | MsaT004371.1:CDS |
| CCTGGCGCGCAACCTGCTGT+TGG | 0.402151 | 1:+68842277 | MsaT004371.1:CDS |
| AAGAGTCGAACCGGTCGTAA+TGG | 0.402365 | 1:-68841741 | None:intergenic |
| TCAGCCAGAATGCATTCATC+TGG | 0.404570 | 1:+68844876 | MsaT004371.1:CDS |
| AGCCCCTTGTACATATGAAC+CGG | 0.406272 | 1:-68842058 | None:intergenic |
| TAAGGACTCCATCCAGGAAA+TGG | 0.406810 | 1:-68842114 | None:intergenic |
| TTGGACCCTGACTTCAGTTC+AGG | 0.406845 | 1:-68844846 | None:intergenic |
| TGAATGCATTCTGGCTGAAA+AGG | 0.407290 | 1:-68844871 | None:intergenic |
| GGTGGGTCTGTCTCACTGTC+TGG | 0.408100 | 1:+68844939 | MsaT004371.1:CDS |
| GTGCTCCTATTATTTGAAAA+CGG | 0.410929 | 1:+68841858 | MsaT004371.1:CDS |
| CATAAATATTTAGTGGAGCT+TGG | 0.417854 | 1:-68841713 | None:intergenic |
| CCTCCTCTGCCGGAACAGTT+TGG | 0.418933 | 1:+68841991 | MsaT004371.1:CDS |
| TCCTGAAAGACCCGGTGAAC+CGG | 0.419994 | 1:+68842420 | MsaT004371.1:CDS |
| TTCGGTACACCATGTCTCTC+CGG | 0.421325 | 1:-68840946 | None:intergenic |
| CCAACTGGGTATGGAGCAAC+TGG | 0.428649 | 1:-68844777 | None:intergenic |
| GGTCCCGTGCTTCTTTCCCC+AGG | 0.436024 | 1:+68842084 | MsaT004371.1:CDS |
| CCCTGGAGGAAACACACTTC+AGG | 0.438306 | 1:+68842387 | MsaT004371.1:CDS |
| ATTTCCAGATGAATGCATTC+TGG | 0.440875 | 1:-68844880 | None:intergenic |
| GCTGCTGCAGTAAGAGCTAC+AGG | 0.442302 | 1:+68841465 | MsaT004371.1:CDS |
| CAGTTGCTCCATACCCAGTT+GGG | 0.446844 | 1:+68844778 | MsaT004371.1:CDS |
| AATGGTTCTGGTACCTCTGT+TGG | 0.448422 | 1:+68844900 | MsaT004371.1:CDS |
| TTTCGGCCTGAACTGAAGTC+AGG | 0.458185 | 1:+68844840 | MsaT004371.1:CDS |
| CATTTATCACTTGGTGGTGG+TGG | 0.458400 | 1:+68840910 | MsaT004371.1:CDS |
| CTCATATAATAAGCACAATT+CGG | 0.458439 | 1:-68840964 | None:intergenic |
| CCTGAAGTGTGTTTCCTCCA+GGG | 0.458829 | 1:-68842387 | None:intergenic |
| AGTAAAGACCCAACTGGGTA+TGG | 0.465151 | 1:-68844786 | None:intergenic |
| GGGTTGTTCCATTTCCTGGA+TGG | 0.465512 | 1:+68842106 | MsaT004371.1:CDS |
| GAAGCTCCTCCAAACTGTTC+CGG | 0.468963 | 1:-68842000 | None:intergenic |
| CTCATATAGTATTGGCAGAC+CGG | 0.470230 | 1:-68842439 | None:intergenic |
| CTTTGGTCTTCCTCTACGCC+CGG | 0.470273 | 1:+68842543 | MsaT004371.1:CDS |
| GTCCCGTGCTTCTTTCCCCA+GGG | 0.477072 | 1:+68842085 | MsaT004371.1:CDS |
| CCAGTTGCTCCATACCCAGT+TGG | 0.481757 | 1:+68844777 | MsaT004371.1:CDS |
| AGAATGCATTCATCTGGAAA+TGG | 0.482468 | 1:+68844882 | MsaT004371.1:CDS |
| TCCTCCAGGGCCAGGAGAAG+AGG | 0.485909 | 1:-68842374 | None:intergenic |
| CCAGGAAATGGAACAACCCC+TGG | 0.488180 | 1:-68842102 | None:intergenic |
| GCTTGGCGAACCTCCATGTC+AGG | 0.489422 | 1:+68841503 | MsaT004371.1:CDS |
| CCCCAGTTCTCATATAGTAT+TGG | 0.489917 | 1:-68842447 | None:intergenic |
| CTGAAGATGTTGAAGGAACC+AGG | 0.490486 | 1:-68844815 | None:intergenic |
| GTAAGCCCTGTGTTATCTCC+TGG | 0.490761 | 1:+68842259 | MsaT004371.1:CDS |
| CCCTCTTCTCCTGGCCCTGG+AGG | 0.494580 | 1:+68842373 | MsaT004371.1:CDS |
| GGGTATCCATAAATATTTAG+TGG | 0.496866 | 1:-68841720 | None:intergenic |
| TTAGATAGTAAAGACCCAAC+TGG | 0.497066 | 1:-68844792 | None:intergenic |
| ACCCCTGGGGAAAGAAGCAC+GGG | 0.497178 | 1:-68842087 | None:intergenic |
| CCTCTGCCGGAACAGTTTGG+AGG | 0.503926 | 1:+68841994 | MsaT004371.1:CDS |
| TGCAAGTTTGATCATCCTGC+GGG | 0.504011 | 1:+68844711 | MsaT004371.1:CDS |
| CCTCCAAACTGTTCCGGCAG+AGG | 0.504937 | 1:-68841994 | None:intergenic |
| TGGGTCTTTACTATCTAACC+TGG | 0.505387 | 1:+68844797 | MsaT004371.1:CDS |
| GGGGACTACCCGGAGAGGCT+TGG | 0.507506 | 1:+68841486 | MsaT004371.1:CDS |
| AGTGTGTTTCCTCCAGGGCC+AGG | 0.516627 | 1:-68842382 | None:intergenic |
| CAGAGTTCTGCTTCTTTGAA+CGG | 0.524210 | 1:+68844978 | MsaT004371.1:CDS |
| CGAAATTCTGAAGATGTTGA+AGG | 0.524251 | 1:-68844822 | None:intergenic |
| ACCGAATAAGGACTCCATCC+AGG | 0.527011 | 1:-68842120 | None:intergenic |
| CCTCCAGGGCCAGGAGAAGA+GGG | 0.528497 | 1:-68842373 | None:intergenic |
| GGGCCAGGAGAAGAGGGCAG+AGG | 0.530606 | 1:-68842367 | None:intergenic |
| GTATTGGCAGACCGGTTCAC+CGG | 0.534770 | 1:-68842431 | None:intergenic |
| GATCACGCGGGTGATTGAAA+CGG | 0.536117 | 1:-68841017 | None:intergenic |
| GAGGTTCGCCAAGCCTCTCC+GGG | 0.539007 | 1:-68841494 | None:intergenic |
| TCCAACGGTTCCTCCTCTGC+CGG | 0.542744 | 1:+68841981 | MsaT004371.1:CDS |
| TTCCACCATCCTCAACCTGC+TGG | 0.542831 | 1:+68841910 | MsaT004371.1:CDS |
| AGAGAAGTAGCCCCAACAGC+AGG | 0.544267 | 1:-68842289 | None:intergenic |
| ATATCATCATCCACGGGACC+AGG | 0.545094 | 1:+68842495 | MsaT004371.1:CDS |
| ATGTGGCATTTATCACTTGG+TGG | 0.548863 | 1:+68840904 | MsaT004371.1:CDS |
| TCGGTACACCATGTCTCTCC+GGG | 0.549964 | 1:-68840945 | None:intergenic |
| TCCGGCAGAGGAGGAACCGT+TGG | 0.550152 | 1:-68841982 | None:intergenic |
| AATGAAGTGCCAGCAGGTTG+AGG | 0.551017 | 1:-68841919 | None:intergenic |
| TATTGGCAGACCGGTTCACC+GGG | 0.551065 | 1:-68842430 | None:intergenic |
| CCGTGGATGATGATATCGAC+AGG | 0.551295 | 1:-68842488 | None:intergenic |
| CGTTCAAAGAAGCAGAACTC+TGG | 0.551424 | 1:-68844977 | None:intergenic |
| TGCCAGCAGGTTGAGGATGG+TGG | 0.556077 | 1:-68841912 | None:intergenic |
| TCGATGTGGCATTTATCACT+TGG | 0.559752 | 1:+68840901 | None:intergenic |
| CCAAACTGTTCCGGCAGAGG+AGG | 0.560230 | 1:-68841991 | None:intergenic |
| GCCAATACTATATGAGAACT+GGG | 0.562063 | 1:+68842446 | MsaT004371.1:CDS |
| GGGCGTAGAGGAAGACCAAA+GGG | 0.563721 | 1:-68842541 | None:intergenic |
| TAAAATTGAGGTGCAGATGC+TGG | 0.564467 | 1:-68841943 | None:intergenic |
| AACCCCTGGGGAAAGAAGCA+CGG | 0.566411 | 1:-68842088 | None:intergenic |
| TGGCGCGCAACCTGCTGTTG+GGG | 0.568122 | 1:+68842279 | MsaT004371.1:CDS |
| GAAGTGGTCGTGCAGCAACC+TGG | 0.569368 | 1:-68842513 | None:intergenic |
| GCTAGACCTCCTGTGTTACC+CGG | 0.569379 | 1:+68842039 | MsaT004371.1:CDS |
| CAGGAAATGGAACAACCCCT+GGG | 0.572341 | 1:-68842101 | None:intergenic |
| AGCTTCTGCAAGTGTGAGAG+TGG | 0.577326 | 1:+68842017 | MsaT004371.1:CDS |
| TGGCATTTATCACTTGGTGG+TGG | 0.580267 | 1:+68840907 | MsaT004371.1:CDS |
| TCAACAGGTGCAGTCTCCAA+CGG | 0.580807 | 1:+68841966 | MsaT004371.1:CDS |
| CGTGCAGCAACCTGGTCCCG+TGG | 0.581143 | 1:-68842505 | None:intergenic |
| CTGTATCTCATTGACCCCGC+AGG | 0.585745 | 1:-68844726 | None:intergenic |
| GTGCTTATTATATGAGAACC+GGG | 0.587111 | 1:+68840971 | MsaT004371.1:CDS |
| TTCGGCCTGAACTGAAGTCA+GGG | 0.588933 | 1:+68844841 | MsaT004371.1:CDS |
| TCAATAAGAGAAGATGCTGA+TGG | 0.590082 | 1:-68844750 | None:intergenic |
| AAACAAAATTATACCTGACA+TGG | 0.597128 | 1:-68841516 | None:intergenic |
| TTACCCGGTTCATATGTACA+AGG | 0.598382 | 1:+68842054 | MsaT004371.1:CDS |
| ACCATTCATACCGGGCGTAG+AGG | 0.599219 | 1:-68842553 | None:intergenic |
| TTATGGATACCCATTACGAC+CGG | 0.600721 | 1:+68841731 | MsaT004371.1:CDS |
| AAGAGCTACAGGGGACTACC+CGG | 0.601311 | 1:+68841476 | MsaT004371.1:CDS |
| CTGCTGCAGTAAGAGCTACA+GGG | 0.603414 | 1:+68841466 | MsaT004371.1:CDS |
| GAATCTTACCCGGAGAGACA+TGG | 0.604072 | 1:+68840937 | MsaT004371.1:CDS |
| CCTGTCGATATCATCATCCA+CGG | 0.616717 | 1:+68842488 | MsaT004371.1:CDS |
| ACCCGGTTCATATGTACAAG+GGG | 0.619952 | 1:+68842056 | MsaT004371.1:CDS |
| TGCGCGCCAGGAGATAACAC+AGG | 0.621580 | 1:-68842265 | None:intergenic |
| GCTGGCAATGAAGTGCCAGC+AGG | 0.622750 | 1:-68841925 | None:intergenic |
| TCCACCATATCCACAAAACC+CGG | 0.626060 | 1:-68840989 | None:intergenic |
| TAGATAGTAAAGACCCAACT+GGG | 0.626186 | 1:-68844791 | None:intergenic |
| CTGTCGATATCATCATCCAC+GGG | 0.629057 | 1:+68842489 | MsaT004371.1:CDS |
| TCCCGTGCTTCTTTCCCCAG+GGG | 0.630198 | 1:+68842086 | MsaT004371.1:CDS |
| TGCACCTGTTGATAAAATTG+AGG | 0.642079 | 1:-68841955 | None:intergenic |
| GCCCCTTGTACATATGAACC+GGG | 0.643721 | 1:-68842057 | None:intergenic |
| TGGTGGTGTTGAATCTTACC+CGG | 0.644232 | 1:+68840927 | MsaT004371.1:CDS |
| AGCAGAAGCAGCAGACAGAG+TGG | 0.645532 | 1:+68845002 | MsaT004371.1:CDS |
| ACATATGAACCGGGTAACAC+AGG | 0.645643 | 1:-68842048 | None:intergenic |
| ATTACCGCAGCACGATCACG+CGG | 0.645892 | 1:-68841030 | None:intergenic |
| ATGCAAGTTTGATCATCCTG+CGG | 0.650257 | 1:+68844710 | MsaT004371.1:CDS |
| AGACCAAAGGGACTAAGAAG+TGG | 0.653237 | 1:-68842529 | None:intergenic |
| AAGTGCCAGCAGGTTGAGGA+TGG | 0.654749 | 1:-68841915 | None:intergenic |
| CAAAATTATACCTGACATGG+AGG | 0.657604 | 1:-68841513 | None:intergenic |
| TACCCGGTTCATATGTACAA+GGG | 0.670537 | 1:+68842055 | MsaT004371.1:CDS |
| GCTCCTATTATTTGAAAACG+GGG | 0.671672 | 1:+68841860 | MsaT004371.1:CDS |
| CGGGCGTAGAGGAAGACCAA+AGG | 0.672188 | 1:-68842542 | None:intergenic |
| TCACCCGCGTGATCGTGCTG+CGG | 0.674265 | 1:+68841026 | MsaT004371.1:CDS |
| AAAGTATTTCCTGAAAGACC+CGG | 0.677421 | 1:+68842412 | MsaT004371.1:CDS |
| GCGCGCCAGGAGATAACACA+GGG | 0.680593 | 1:-68842264 | None:intergenic |
| CTACAGGGGACTACCCGGAG+AGG | 0.687189 | 1:+68841481 | MsaT004371.1:CDS |
| TGCTGCAGTAAGAGCTACAG+GGG | 0.695738 | 1:+68841467 | MsaT004371.1:CDS |
| TATGAACCGGGTAACACAGG+AGG | 0.706559 | 1:-68842045 | None:intergenic |
| AGGAAATGGAACAACCCCTG+GGG | 0.738169 | 1:-68842100 | None:intergenic |
| CCAATACTATATGAGAACTG+GGG | 0.738213 | 1:+68842447 | MsaT004371.1:CDS |
| TTACCGCAGCACGATCACGC+GGG | 0.739210 | 1:-68841029 | None:intergenic |
| GCAAGTTTGATCATCCTGCG+GGG | 0.750469 | 1:+68844712 | MsaT004371.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 68840904 | 68845037 | 68840904 | ID=MsaG004371 |
| Chr1 | mRNA | 68840904 | 68845037 | 68840904 | ID=MsaT004371.1;Parent=MsaG004371 |
| Chr1 | exon | 68840904 | 68841047 | 68840904 | ID=MsaT004371.1.exon1;Parent=MsaT004371.1 |
| Chr1 | CDS | 68840904 | 68841047 | 68840904 | ID=cds.MsaT004371.1;Parent=MsaT004371.1 |
| Chr1 | exon | 68841462 | 68841524 | 68841462 | ID=MsaT004371.1.exon2;Parent=MsaT004371.1 |
| Chr1 | CDS | 68841462 | 68841524 | 68841462 | ID=cds.MsaT004371.1;Parent=MsaT004371.1 |
| Chr1 | exon | 68841633 | 68841752 | 68841633 | ID=MsaT004371.1.exon3;Parent=MsaT004371.1 |
| Chr1 | CDS | 68841633 | 68841752 | 68841633 | ID=cds.MsaT004371.1;Parent=MsaT004371.1 |
| Chr1 | exon | 68841847 | 68842140 | 68841847 | ID=MsaT004371.1.exon4;Parent=MsaT004371.1 |
| Chr1 | CDS | 68841847 | 68842140 | 68841847 | ID=cds.MsaT004371.1;Parent=MsaT004371.1 |
| Chr1 | exon | 68842253 | 68842564 | 68842253 | ID=MsaT004371.1.exon5;Parent=MsaT004371.1 |
| Chr1 | CDS | 68842253 | 68842564 | 68842253 | ID=cds.MsaT004371.1;Parent=MsaT004371.1 |
| Chr1 | exon | 68844654 | 68845037 | 68844654 | ID=MsaT004371.1.exon6;Parent=MsaT004371.1 |
| Chr1 | CDS | 68844654 | 68845037 | 68844654 | ID=cds.MsaT004371.1;Parent=MsaT004371.1 |
| Gene Sequence |
| Protein sequence |