AlfalfaGEDB | MsaG004413

M. sativa ssp. caerulea / MsaG004413

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004413	AES61869.1	74.522	157	16	2	1	145	1	145	2.11e-73	226

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification
MsaG004413	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000243	MsaG004413	0.819300	2.182419e-52	4.712344e-50
MsaG000488	MsaG004413	0.802056	1.128482e-48	1.598444e-46
MsaG000461	MsaG004413	0.812612	6.679343e-51	1.216136e-48
MsaG000772	MsaG004413	0.808461	5.216306e-50	8.583394e-48
MsaG000906	MsaG004413	0.801033	1.824897e-48	2.525536e-46
MsaG001503	MsaG004413	0.810843	1.614044e-50	2.813567e-48
MsaG001601	MsaG004413	0.811678	1.065454e-50	1.895659e-48
MsaG001767	MsaG004413	0.800776	2.058188e-48	2.832041e-46
MsaG002404	MsaG004413	0.800546	2.291409e-48	3.136585e-46
MsaG003309	MsaG004413	0.801484	1.476948e-48	2.064965e-46
MsaG003664	MsaG004413	0.808140	6.100658e-50	9.961513e-48
MsaG003688	MsaG004413	0.803657	5.287982e-49	7.771103e-47
MsaG003706	MsaG004413	0.850185	3.806566e-60	2.076067e-57
MsaG004025	MsaG004413	0.836384	1.766027e-56	6.166750e-54
MsaG004433	MsaG004413	0.808481	5.165174e-50	8.503446e-48
MsaG004413	MsaG004616	0.803608	5.413061e-49	7.945807e-47
MsaG004413	MsaG004759	0.842888	3.657203e-58	1.564785e-55
MsaG004413	MsaG004912	0.824745	1.211333e-53	3.025909e-51
MsaG004413	MsaG005665	0.864812	1.854278e-64	1.738793e-61
MsaG004413	MsaG005843	0.805750	1.943100e-49	2.997755e-47
MsaG004413	MsaG006263	0.808106	6.204411e-50	1.012256e-47
MsaG004413	MsaG006550	0.823510	2.354066e-53	5.686346e-51
MsaG004413	MsaG007500	0.817657	5.123489e-52	1.059952e-49
MsaG004413	MsaG007841	0.828851	1.280257e-54	3.585456e-52
MsaG004413	MsaG008052	0.809191	3.646048e-50	6.105956e-48
MsaG004413	MsaG008404	0.818004	4.281903e-52	8.938622e-50
MsaG004413	MsaG008428	0.810294	2.117915e-50	3.642790e-48
MsaG004413	MsaG008537	0.800907	1.935861e-48	2.671467e-46
MsaG004413	MsaG009273	0.806875	1.128519e-49	1.787882e-47
MsaG004413	MsaG009738	0.810560	1.856878e-50	3.214597e-48
MsaG004413	MsaG010744	0.816314	1.023186e-51	2.044979e-49
MsaG004413	MsaG010918	0.802265	1.022648e-48	1.455459e-46
MsaG004413	MsaG011499	0.811167	1.373695e-50	2.413714e-48
MsaG004413	MsaG012237	0.816325	1.017173e-51	2.033527e-49
MsaG004413	MsaG013222	0.803211	6.537075e-49	9.508261e-47
MsaG004413	MsaG013264	0.805749	1.944325e-49	2.999548e-47
MsaG004413	MsaG014283	0.830528	5.024196e-55	1.476082e-52
MsaG004413	MsaG014583	0.819162	2.345292e-52	5.045763e-50
MsaG004413	MsaG015045	0.811329	1.267556e-50	2.236087e-48
MsaG004413	MsaG016512	0.809531	3.085573e-50	5.210098e-48
MsaG004413	MsaG016976	0.823329	2.594168e-53	6.235780e-51
MsaG004413	MsaG017067	0.820734	1.029189e-52	2.307855e-50
MsaG004413	MsaG017134	0.805644	2.044501e-49	3.146425e-47
MsaG004413	MsaG017162	0.806506	1.349532e-49	2.119579e-47
MsaG004413	MsaG017204	0.830143	6.231517e-55	1.810879e-52
MsaG004413	MsaG017399	0.814625	2.420281e-51	4.634505e-49
MsaG004413	MsaG017854	0.812066	8.777560e-51	1.576638e-48
MsaG004413	MsaG018034	0.806155	1.598595e-49	2.489939e-47
MsaG004413	MsaG018084	0.823097	2.936799e-53	7.014964e-51
MsaG004413	MsaG018165	0.832821	1.375286e-55	4.318570e-53
MsaG004413	MsaG018437	0.806647	1.260641e-49	1.986514e-47
MsaG004413	MsaG018494	0.819051	2.486220e-52	5.333143e-50
MsaG004413	MsaG018552	0.820839	9.738039e-53	2.189708e-50
MsaG004413	MsaG018659	0.826535	4.581002e-54	1.202402e-51
MsaG004413	MsaG018785	0.815615	1.462343e-51	2.871278e-49
MsaG004413	MsaG019578	0.807265	9.340344e-50	1.493439e-47
MsaG004413	MsaG020157	0.820511	1.157199e-52	2.579766e-50
MsaG004413	MsaG020403	0.814237	2.946731e-51	5.588031e-49
MsaG004413	MsaG020496	0.838312	5.698786e-57	2.110307e-54
MsaG004413	MsaG020693	0.801209	1.679837e-48	2.334044e-46
MsaG004413	MsaG020772	0.811226	1.334063e-50	2.347451e-48
MsaG004413	MsaG021339	0.809135	3.748035e-50	6.268529e-48
MsaG004413	MsaG023325	0.824683	1.252556e-53	3.123525e-51
MsaG004413	MsaG023698	0.806308	1.484573e-49	2.320813e-47
MsaG004413	MsaG023813	0.822084	5.037577e-53	1.170863e-50
MsaG004413	MsaG023911	0.818952	2.616909e-52	5.598994e-50
MsaG004413	MsaG023963	0.816885	7.631424e-52	1.547742e-49
MsaG004413	MsaG024365	0.811499	1.164779e-50	2.063354e-48
MsaG004413	MsaG024735	0.828765	1.342456e-54	3.750643e-52
MsaG004413	MsaG025496	0.819389	2.083358e-52	4.508841e-50
MsaG004413	MsaG025503	0.800472	2.371728e-48	3.241110e-46
MsaG004413	MsaG025882	0.822963	3.154155e-53	7.507145e-51
MsaG004413	MsaG026931	0.813640	3.983871e-51	7.442458e-49
MsaG004413	MsaG027757	0.818765	2.885333e-52	6.142892e-50
MsaG004413	MsaG027861	0.839204	3.359188e-57	1.278969e-54
MsaG004413	MsaG028917	0.817686	5.049408e-52	1.045383e-49
MsaG004413	MsaG028919	0.800248	2.633333e-48	3.580345e-46
MsaG004413	MsaG030094	0.803806	4.926243e-49	7.264565e-47
MsaG004413	MsaG030389	0.803827	4.877330e-49	7.195848e-47
MsaG004413	MsaG030522	0.807948	6.698710e-50	1.088779e-47
MsaG004413	MsaG031203	0.805197	2.534539e-49	3.860197e-47
MsaG004413	MsaG031319	0.812459	7.211726e-51	1.308124e-48
MsaG004413	MsaG032089	0.801682	1.345645e-48	1.889903e-46
MsaG004413	MsaG032180	0.829207	1.050111e-54	2.970626e-52
MsaG004413	MsaG032712	0.822291	4.514136e-53	1.055055e-50
MsaG004413	MsaG033229	0.810077	2.356896e-50	4.032498e-48
MsaG004413	MsaG033372	0.867532	2.574197e-65	2.693665e-62
MsaG004413	MsaG033488	0.846579	3.742725e-59	1.807046e-56
MsaG004413	MsaG033927	0.832694	1.478380e-55	4.625088e-53
MsaG004413	MsaG034014	0.825949	6.304999e-54	1.628286e-51
MsaG004413	MsaG034372	0.803732	5.103376e-49	7.513046e-47
MsaG004413	MsaG034545	0.805578	2.110527e-49	3.242900e-47
MsaG004413	MsaG034954	0.833242	1.081886e-55	3.439812e-53
MsaG004413	MsaG035413	0.843974	1.882460e-58	8.338931e-56
MsaG004413	MsaG035450	0.839463	2.879953e-57	1.105512e-54
MsaG004413	MsaG035534	0.800502	2.338692e-48	3.198127e-46
MsaG004413	MsaG036658	0.826191	5.526249e-54	1.436735e-51
MsaG004413	MsaG037664	0.801894	1.217882e-48	1.718782e-46
MsaG004413	MsaG037666	0.815177	1.828429e-51	3.550325e-49
MsaG004413	MsaG038311	0.822626	3.776329e-53	8.906264e-51
MsaG004413	MsaG040358	0.810881	1.583318e-50	2.762574e-48
MsaG004413	MsaG040720	0.802249	1.030071e-48	1.465487e-46
MsaG004413	MsaG040895	0.853209	5.343339e-61	3.238655e-58
MsaG004413	MsaG042509	0.806981	1.072000e-49	1.702588e-47
MsaG004413	MsaG042654	0.817612	5.244973e-52	1.083826e-49
MsaG004413	MsaG043564	0.810365	2.044540e-50	3.522804e-48
MsaG004413	MsaG043740	0.816963	7.329083e-52	1.489446e-49
MsaG004413	MsaG043888	0.809148	3.725262e-50	6.232227e-48
MsaG004413	MsaG044454	0.814479	2.606239e-51	4.972412e-49
MsaG004413	MsaG044881	0.800863	1.975620e-48	2.723710e-46
MsaG004413	MsaG045270	0.825916	6.420031e-54	1.656462e-51
MsaG004413	MsaG045390	0.819907	1.589262e-52	3.486714e-50
MsaG004413	MsaG045427	0.802635	8.587628e-49	1.232647e-46
MsaG004413	MsaG045534	0.812969	5.585527e-51	1.026079e-48
MsaG004413	MsaG045759	0.814905	2.099632e-51	4.049075e-49
MsaG004413	MsaG045721	0.820559	1.128397e-52	2.518735e-50
MsaG004413	MsaG045869	0.805597	2.091836e-49	3.215615e-47
MsaG004413	MsaG046424	0.805626	2.062715e-49	3.173053e-47
MsaG004413	MsaG046909	0.809469	3.181021e-50	5.363294e-48
MsaG004413	MsaG046962	0.841131	1.060440e-57	4.289790e-55
MsaG004413	MsaG046981	0.800612	2.221713e-48	3.045805e-46
MsaG004413	MsaG047022	0.820754	1.018129e-52	2.284305e-50
MsaG004413	MsaG001756	0.815801	1.329856e-51	2.623442e-49
MsaG004413	MsaG001341	0.807741	7.410735e-50	1.198514e-47
MsaG004413	MsaG003533	0.814720	2.306901e-51	4.427923e-49
MsaG004413	MsaG001948	0.801101	1.767724e-48	2.450153e-46
MsaG004413	MsaG002771	0.806842	1.146816e-49	1.815421e-47
MsaG004413	MsaG008691	0.807976	6.608650e-50	1.074861e-47
MsaG004413	MsaG013302	0.803130	6.793450e-49	9.862563e-47
MsaG004413	MsaG011924	0.808156	6.054355e-50	9.889614e-48
MsaG004413	MsaG014384	0.802381	9.680141e-49	1.381411e-46
MsaG004413	MsaG013042	0.831182	3.479807e-55	1.041746e-52
MsaG004413	MsaG014890	0.801274	1.630013e-48	2.268129e-46
MsaG004413	MsaG025375	0.803052	7.047982e-49	1.021384e-46
MsaG004413	MsaG029778	0.800456	2.389916e-48	3.264787e-46
MsaG004413	MsaG032396	0.805657	2.032287e-49	3.128516e-47
MsaG004413	MsaG032991	0.802024	1.145591e-48	1.621472e-46
MsaG004413	MsaG030906	0.809276	3.497578e-50	5.869184e-48
MsaG004413	MsaG030433	0.828869	1.267266e-54	3.551004e-52
MsaG004413	MsaG036959	0.801837	1.250744e-48	1.762848e-46
MsaG004413	MsaG035919	0.800345	2.517476e-48	3.430347e-46
MsaG004413	MsaG036541	0.800515	2.324790e-48	3.180028e-46
MsaG004413	MsaG037320	0.815399	1.633328e-51	3.189416e-49
MsaG004413	MsaG037636	0.805242	2.479865e-49	3.780855e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 27 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAGTTGGGTTTGAAAGCTT+TGG	0.278312	1:+69480143	None:intergenic
GAGTTGGGTTTGAAAGCTTT+GGG	0.313526	1:+69480144	None:intergenic
ATAGTCTTCAAGGGTTCCTT+TGG	0.332237	1:+69480232	None:intergenic
TCAAACAACAAAATATTATC+TGG	0.350768	1:+69478318	None:intergenic
CACAAGATTGGCTTCTCATA+TGG	0.363409	1:+69480281	None:intergenic
TTTCAACAGAAACTGAAGTT+TGG	0.364600	1:-69480313	MsaT004413.1:CDS
ATACTTTGCTGAGCTATCTT+CGG	0.400089	1:+69480206	None:intergenic
GACTATGAGGCCGACACTAA+TGG	0.401191	1:-69478421	MsaT004413.1:CDS
TACTTTGCTGAGCTATCTTC+GGG	0.431538	1:+69480207	None:intergenic
CCAAGTAATGAGATCGGCCT+TGG	0.442800	1:-69478276	MsaT004413.1:CDS
CCACAGGCGTTACACAAGAT+TGG	0.446240	1:+69480269	None:intergenic
TCTTCGGGAGATAGTCTTCA+AGG	0.462167	1:+69480222	None:intergenic
CCAAGGCCGATCTCATTACT+TGG	0.469229	1:+69478276	None:intergenic
CGCCTGTGGATTGCATTTCA+AGG	0.472275	1:-69480255	MsaT004413.1:CDS
GAAACTGAAGTTTGGCGTAA+AGG	0.486401	1:-69480305	MsaT004413.1:CDS
GGCCTTGAAATGCAATCCAC+AGG	0.512475	1:+69480253	None:intergenic
GTCAGTGTCTCCATTAGTGT+CGG	0.538511	1:+69478411	None:intergenic
AAGCTTTCAAACCCAACTCC+AGG	0.571736	1:-69480140	MsaT004413.1:intron
ATTAGTGTCGGCCTCATAGT+CGG	0.574226	1:+69478423	None:intergenic
AGAGGTCGGCACCGACTATG+AGG	0.586753	1:-69478434	MsaT004413.1:CDS
AATGGAGACACTGACACCAA+TGG	0.595378	1:-69478403	MsaT004413.1:CDS
TTTATACCAAGTAATGAGAT+CGG	0.595926	1:-69478282	MsaT004413.1:CDS
CCAATCTTGTGTAACGCCTG+TGG	0.600058	1:-69480269	MsaT004413.1:CDS
CTTCGGGAGATAGTCTTCAA+GGG	0.601274	1:+69480223	None:intergenic
TCTTTAGAAGAGTGCAGCCA+AGG	0.606342	1:+69478259	None:intergenic
GGATTGCATTTCAAGGCCAA+AGG	0.606742	1:-69480248	MsaT004413.1:CDS
GGAGACACTGACACCAATGG+AGG	0.696756	1:-69478400	MsaT004413.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	69478218	69480339	69478218	ID=MsaG004413
Chr1	mRNA	69478218	69480339	69478218	ID=MsaT004413.1;Parent=MsaG004413
Chr1	exon	69478218	69478456	69478218	ID=MsaT004413.1.exon2;Parent=MsaT004413.1
Chr1	CDS	69478218	69478456	69478218	ID=cds.MsaT004413.1;Parent=MsaT004413.1
Chr1	exon	69480141	69480339	69480141	ID=MsaT004413.1.exon1;Parent=MsaT004413.1
Chr1	CDS	69480141	69480339	69480141	ID=cds.MsaT004413.1;Parent=MsaT004413.1

Gene Sequence

>MsaT004413.1

ATGATTTCAACAGAAACTGAAGTTTGGCGTAAAGGACCATATGAGAAGCCAATCTTGTGTAACGCCTGTGGATTGCATTTCAAGGCCAAAGGAACCCTTGAAGACTATCTCCCGAAGATAGCTCAGCAAAGTATGTCATCAGACCTTGACATTGAAAAAATATCTGGAAGTGACCCAAAGCTTTCAAACCCAACTCCAGAGAGGTCGGCACCGACTATGAGGCCGACACTAATGGAGACACTGACACCAATGGAGGAGTTTCAACAAAAACTTTTCAATCTATGGGAATCTGAGAAAGAAGCAAATGAATCATCTCCAGATAATATTTTGTTGTTTGATAATATGAACAACTTTATACCAAGTAATGAGATCGGCCTTGGCTGCACTCTTCTAAAGACAGATGTTACTTCTAAAGATCAACATGATTCACATGCATAG

Protein sequence

>MsaT004413.1

MISTETEVWRKGPYEKPILCNACGLHFKAKGTLEDYLPKIAQQSMSSDLDIEKISGSDPKLSNPTPERSAPTMRPTLMETLTPMEEFQQKLFNLWESEKEANESSPDNILLFDNMNNFIPSNEIGLGCTLLKTDVTSKDQHDSHA*