AlfalfaGEDB | MsaG004424

M. sativa ssp. caerulea / MsaG004424

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004424	XP_003591632.1	94.103	797	46	1	1	796	384	1180	0.0	1513

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004424	sp\|Q9FPR3\|EDR1_ARATH	37.895	285	150	7	509	780	652	922	6.82e-50	192

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004424	tr\|Q1RSI5\|Q1RSI5_MEDTR	94.103	797	46	1	1	796	384	1180	0.0	1513

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG004424	0.834596	4.976997e-56	1.647138e-53
MsaG000180	MsaG004424	0.810735	1.702500e-50	2.959960e-48
MsaG000640	MsaG004424	0.818216	3.837159e-52	8.053856e-50
MsaG001399	MsaG004424	0.807353	8.948152e-50	1.433782e-47
MsaG001531	MsaG004424	0.850829	2.515290e-60	1.402779e-57
MsaG001538	MsaG004424	0.816142	1.117467e-51	2.223667e-49
MsaG001825	MsaG004424	0.800455	2.390672e-48	3.265786e-46
MsaG002926	MsaG004424	0.828822	1.300595e-54	3.639500e-52
MsaG002978	MsaG004424	0.828376	1.665057e-54	4.601879e-52
MsaG003768	MsaG004424	0.818853	2.756259e-52	5.881601e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004424	MtrunA17_Chr1g0196631	94.103	797	46	1	1	796	384	1180	0.0	1513
MsaG004424	MtrunA17_Chr6g0461841	68.407	364	114	1	427	789	877	1240	1.09e-172	531
MsaG004424	MtrunA17_Chr2g0310781	73.502	317	81	2	476	791	807	1121	1.52e-160	496
MsaG004424	MtrunA17_Chr2g0310761	76.190	294	70	0	497	790	920	1213	2.37e-160	498
MsaG004424	MtrunA17_Chr8g0357611	70.807	322	91	2	475	796	1331	1649	4.70e-157	498
MsaG004424	MtrunA17_Chr2g0305141	55.450	422	151	4	402	789	938	1356	2.70e-145	461
MsaG004424	MtrunA17_Chr4g0072741	47.338	526	235	7	300	789	589	1108	1.31e-144	453
MsaG004424	MtrunA17_Chr4g0065211	71.986	282	79	0	508	789	1113	1394	6.05e-140	447
MsaG004424	MtrunA17_Chr6g0482711	39.502	281	150	7	522	796	666	932	6.62e-52	195
MsaG004424	MtrunA17_Chr1g0179331	37.539	317	158	11	491	782	511	812	6.78e-51	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004424	AT1G04700.1	65.067	375	127	2	422	792	668	1042	4.90e-170	518
MsaG004424	AT1G04700.2	65.067	375	127	2	422	792	668	1042	4.90e-170	518
MsaG004424	AT3G24715.1	73.955	311	81	0	479	789	799	1109	2.46e-164	506
MsaG004424	AT3G24715.3	73.955	311	81	0	479	789	799	1109	2.46e-164	506
MsaG004424	AT3G24715.2	73.955	311	81	0	479	789	799	1109	2.46e-164	506
MsaG004424	AT1G79570.2	71.903	331	85	2	458	785	908	1233	7.52e-162	503
MsaG004424	AT1G79570.1	71.903	331	85	2	458	785	908	1233	7.52e-162	503
MsaG004424	AT1G16270.1	79.094	287	60	0	499	785	846	1132	4.57e-161	498
MsaG004424	AT1G16270.2	79.094	287	60	0	499	785	846	1132	4.57e-161	498
MsaG004424	AT1G16270.3	79.094	287	60	0	499	785	846	1132	4.57e-161	498

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Find 153 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAGATTATTGAGAA+TGG	0.482569	1:-69594073	MsaT004424.1:intron
AAAATGCCACCACATTTGGA+TGG	0.637736	1:+69593609	None:intergenic
AAACACAACACACTTGTTTC+GGG	0.256679	1:-69592970	MsaT004424.1:CDS
AAACATTATTCCCTTTGTCA+CGG	0.563591	1:-69596084	MsaT004424.1:CDS
AAAGGTTGATGGAAGAGTGT+TGG	0.585495	1:-69592247	MsaT004424.1:CDS
AACACACCAATATGATGTGT+CGG	0.615234	1:-69595208	MsaT004424.1:CDS
AACTCTTCACCATCCAAATG+TGG	0.619573	1:-69593618	MsaT004424.1:CDS
AAGATGAGGAAGCACCATGT+TGG	0.645786	1:+69595376	None:intergenic
AAGGACGAAAACATAGTCAC+TGG	0.576327	1:-69594931	MsaT004424.1:CDS
AATAATTCTGGTGCCATCCA+AGG	0.539910	1:+69592928	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	69592142	69596258	69592142	ID=MsaG004424
Chr1	mRNA	69592142	69596258	69592142	ID=MsaT004424.1;Parent=MsaG004424
Chr1	exon	69592142	69592329	69592142	ID=MsaT004424.1.exon9;Parent=MsaT004424.1
Chr1	CDS	69592142	69592329	69592142	ID=cds.MsaT004424.1;Parent=MsaT004424.1
Chr1	exon	69592644	69592731	69592644	ID=MsaT004424.1.exon8;Parent=MsaT004424.1
Chr1	CDS	69592644	69592731	69592644	ID=cds.MsaT004424.1;Parent=MsaT004424.1
Chr1	exon	69592897	69593019	69592897	ID=MsaT004424.1.exon7;Parent=MsaT004424.1
Chr1	CDS	69592897	69593019	69592897	ID=cds.MsaT004424.1;Parent=MsaT004424.1
Chr1	exon	69593284	69593431	69593284	ID=MsaT004424.1.exon6;Parent=MsaT004424.1
Chr1	CDS	69593284	69593431	69593284	ID=cds.MsaT004424.1;Parent=MsaT004424.1
Chr1	exon	69593512	69593675	69593512	ID=MsaT004424.1.exon5;Parent=MsaT004424.1
Chr1	CDS	69593512	69593675	69593512	ID=cds.MsaT004424.1;Parent=MsaT004424.1
Chr1	exon	69593934	69594086	69593934	ID=MsaT004424.1.exon4;Parent=MsaT004424.1
Chr1	CDS	69593934	69594086	69593934	ID=cds.MsaT004424.1;Parent=MsaT004424.1
Chr1	exon	69594556	69594642	69594556	ID=MsaT004424.1.exon3;Parent=MsaT004424.1
Chr1	CDS	69594556	69594642	69594556	ID=cds.MsaT004424.1;Parent=MsaT004424.1
Chr1	exon	69594732	69595028	69594732	ID=MsaT004424.1.exon2;Parent=MsaT004424.1
Chr1	CDS	69594732	69595028	69594732	ID=cds.MsaT004424.1;Parent=MsaT004424.1
Chr1	exon	69595116	69596258	69595116	ID=MsaT004424.1.exon1;Parent=MsaT004424.1
Chr1	CDS	69595116	69596258	69595116	ID=cds.MsaT004424.1;Parent=MsaT004424.1

Gene Sequence

>MsaT004424.1

ATGTCAAAACGAGGTCCATATTTAACAGCATTGAATGTACCAAGAAGGTCATTTAATCAAAAGCCTCCATCTCCCATCCGTGTACTGCCTAGAGAGCTAAAAATATCTAATGTTCAGTTATTTAAGGATCAACCATATAATGTTGCTAATGAAAACATTATTCCCTTTGTCACGGAAAAAGTTCCAGGTGACAACTCTTTGTATGTAGACAATAATAATTTTGTTAATCGGATTGCATATTATAACAATCTTCCTCAAGGGTCTCCATGTGTGAACTGTCATCCTAGTAATCAATATATATTGGAGTCTGACCATGTCAAGAAGTCTAATGCTGAGTTTCATTTTCACAAACGAAGCAATAGTAATGAATTTGTCTCTTCTGCAATTTGTAATCAAAGTGATATGATATTTGAGAGACCTTTAGTTAACAACGAAGGTTCATACCATTTTAACAAGATTGTCTCTCATCATCCTCTTGAGTCATCGAGTGTATTTTCGGTGTCTGATGATAGGGATGTATCTCAGTATAGAATGTTGCATGCACTTTCCGACTCAACACTTCTAGAGAATAGTGAGAACTACAAAGTCCACTTGCAATTTCCACTTAATGTTGAGAGAGACAAATTGTCATCACTAGAAACTTCGAGTTCTTTGGGAGAATGTTCAGTACATCTAGGAGAGATAAATGATGGGAAAGAACGTATGATTTTACATCAAAATTTGCCGACTTTTGGAACAAGCACTAGTTTCAAGAGATTGTCAGAAATTGGTAAAGAGAACTTACACTGCAAAAATAAAAACACTGGTGGGTTCGATGAAAAAGTTGGAGTTATGCCAAAACACTTACAACACATCTACTACCAACATGGTGCTTCCTCATCTTCACCGGATTTACAAAGCAGTGAATACAATGCATCTGCTGCACCTCTTATCTCTTCACAGTCCATTGGAAGTATGATCGAGCAACCCCATGGTATACCATTAGACACAATTGCTTATGAGTTTTCTGTGACGAGCCAAAATTCATCAACACACCAATATGATGTGTCGGAGACAAAAGATGGCCAACCACCTCCCCCTGGCTCTTTAGAATTACGGTCTACAGAGTCCCAAACTGACACAGAGTATACACTAGCTATCTCGTATCCAGATATGGTTTCTTCTTCACTAAGAGAGGTTGTTGTCCATGACGACAATCCTGTATACTACCAGAACCAAAAGGACGAAAACATAGTCACTGGTAAACAATATTATGAATACATTGATGAATTTTGCATCAATAAGCCAGAATCAGCAGCAGTTGTCAAAGAGACGGTTGATTACATATCTTCAGGTATCCAATCATGCTTACAAGCCGTGTCAAATACAACTGAAGAGGACAAACACACGTCTCCTGAAAAAGCAGGGGTATTGTGTGTTATTCCAGAATCTGAAAGTAAGCCTGCAAGAGCTGATAGTGGAAACTTCACTAAGCCTATGGGTGATTCAGAAACATCCGTAATAGAGTCTGAACTTCATGGTTTACAGATTATTGAGAATGGTGATATCGAAGAACTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGCAAATGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTTGCTGGTAGATTTTCCGAGCAAGAGCGATTGACTAAAGATTTTTGGAGAGAGGCAAAGATTCTATCAACTCTTCACCATCCAAATGTGGTGGCATTTTACGGAGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACTGTAGTAGAATATATGGTACATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAAAGAGTGCTTGACCGTCGTAAAAGGATCATGATTGCAATGGATGCAGCCTTTGGCATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAACTTGGGCGATCCTGAACGGCCTGTATGTAAGGTAGGAGATTTTGGCCTATCAAGAATTAAACACAACACACTTGTTTCGGGTGGTGTCAGAGGGACCCTTCCTTGGATGGCACCAGAATTATTGGATGGTAATAGTTCTAGAGTATCTGAGAAGGTTGATATTTTCTCATTCGGCATCACAATGTGGGAAATCTTGACCGGAGAAGAACCTTATGCAAACATGCATTGTGGTGCCATCATAGGAGGTATTGTCAGTAATACGCTTAGACCATCTATTCCGAAACGTTGTGATTCTGAGTGGAAAAGGTTGATGGAAGAGTGTTGGAGCCCTGATCCTGAAACGAGACCATGCTTCACAGAAGTTAAAAATAGACTTCGCAACATGTCAGCTGCATTGCAGAAAAAGAGGCCAACTATTGGAAACCGGTGA

Protein sequence

>MsaT004424.1

MSKRGPYLTALNVPRRSFNQKPPSPIRVLPRELKISNVQLFKDQPYNVANENIIPFVTEKVPGDNSLYVDNNNFVNRIAYYNNLPQGSPCVNCHPSNQYILESDHVKKSNAEFHFHKRSNSNEFVSSAICNQSDMIFERPLVNNEGSYHFNKIVSHHPLESSSVFSVSDDRDVSQYRMLHALSDSTLLENSENYKVHLQFPLNVERDKLSSLETSSSLGECSVHLGEINDGKERMILHQNLPTFGTSTSFKRLSEIGKENLHCKNKNTGGFDEKVGVMPKHLQHIYYQHGASSSSPDLQSSEYNASAAPLISSQSIGSMIEQPHGIPLDTIAYEFSVTSQNSSTHQYDVSETKDGQPPPPGSLELRSTESQTDTEYTLAISYPDMVSSSLREVVVHDDNPVYYQNQKDENIVTGKQYYEYIDEFCINKPESAAVVKETVDYISSGIQSCLQAVSNTTEEDKHTSPEKAGVLCVIPESESKPARADSGNFTKPMGDSETSVIESELHGLQIIENGDIEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRFSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLATVVEYMVHGSLRNVLLKKERVLDRRKRIMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKHNTLVSGGVRGTLPWMAPELLDGNSSRVSEKVDIFSFGITMWEILTGEEPYANMHCGAIIGGIVSNTLRPSIPKRCDSEWKRLMEECWSPDPETRPCFTEVKNRLRNMSAALQKKRPTIGNR*