Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004593 | XP_003591795.2 | 96.825 | 378 | 12 | 0 | 1 | 378 | 1 | 378 | 0.0 | 762 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004593 | sp|Q8VZS3|HHO2_ARATH | 47.929 | 338 | 126 | 12 | 10 | 326 | 16 | 324 | 1.42e-78 | 248 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004593 | tr|G7I465|G7I465_MEDTR | 96.825 | 378 | 12 | 0 | 1 | 378 | 1 | 378 | 0.0 | 762 |
Gene ID | Type | Classification |
---|---|---|
MsaG004593 | TF | GARP-G2-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004593 | MtrunA17_Chr1g0198601 | 96.825 | 378 | 12 | 0 | 1 | 378 | 1 | 378 | 0.0 | 762 |
MsaG004593 | MtrunA17_Chr5g0422621 | 57.368 | 380 | 126 | 14 | 1 | 374 | 10 | 359 | 1.80e-125 | 365 |
MsaG004593 | MtrunA17_Chr4g0062921 | 35.404 | 322 | 144 | 7 | 2 | 294 | 29 | 315 | 1.78e-48 | 169 |
MsaG004593 | MtrunA17_Chr4g0045361 | 34.930 | 355 | 146 | 11 | 10 | 309 | 44 | 368 | 7.75e-43 | 154 |
MsaG004593 | MtrunA17_Chr5g0402631 | 33.636 | 330 | 142 | 12 | 2 | 324 | 56 | 315 | 1.83e-33 | 127 |
MsaG004593 | MtrunA17_Chr2g0291021 | 56.061 | 66 | 29 | 0 | 211 | 276 | 49 | 114 | 1.25e-15 | 77.0 |
MsaG004593 | MtrunA17_Chr2g0294911 | 37.008 | 127 | 57 | 4 | 210 | 323 | 210 | 326 | 2.31e-15 | 77.8 |
MsaG004593 | MtrunA17_Chr4g0067981 | 53.521 | 71 | 32 | 1 | 210 | 280 | 214 | 283 | 7.28e-15 | 76.3 |
MsaG004593 | MtrunA17_Chr2g0304841 | 38.462 | 117 | 63 | 4 | 209 | 323 | 211 | 320 | 8.16e-15 | 76.3 |
MsaG004593 | MtrunA17_Chr7g0254981 | 55.385 | 65 | 29 | 0 | 211 | 275 | 50 | 114 | 1.25e-14 | 73.6 |
MsaG004593 | MtrunA17_Chr4g0074411 | 53.968 | 63 | 28 | 1 | 209 | 271 | 199 | 260 | 1.84e-14 | 74.7 |
MsaG004593 | MtrunA17_Chr1g0161431 | 48.611 | 72 | 36 | 1 | 200 | 271 | 189 | 259 | 3.47e-14 | 73.9 |
MsaG004593 | MtrunA17_Chr3g0137101 | 45.679 | 81 | 42 | 2 | 204 | 284 | 191 | 269 | 4.39e-14 | 73.9 |
MsaG004593 | MtrunA17_Chr5g0400241 | 51.515 | 66 | 31 | 1 | 204 | 269 | 304 | 368 | 7.79e-14 | 72.8 |
MsaG004593 | MtrunA17_Chr5g0417521 | 61.818 | 55 | 21 | 0 | 211 | 265 | 15 | 69 | 1.02e-13 | 71.6 |
MsaG004593 | MtrunA17_Chr4g0074401 | 50.000 | 66 | 32 | 1 | 206 | 271 | 198 | 262 | 1.05e-13 | 72.4 |
MsaG004593 | MtrunA17_Chr7g0274471 | 54.839 | 62 | 28 | 0 | 211 | 272 | 218 | 279 | 2.30e-13 | 71.2 |
MsaG004593 | MtrunA17_Chr1g0149841 | 52.381 | 63 | 29 | 1 | 209 | 271 | 189 | 250 | 2.48e-13 | 71.2 |
MsaG004593 | MtrunA17_Chr4g0054981 | 41.489 | 94 | 51 | 2 | 178 | 268 | 274 | 366 | 2.53e-13 | 71.2 |
MsaG004593 | MtrunA17_Chr7g0261911 | 43.902 | 82 | 44 | 1 | 211 | 292 | 262 | 341 | 2.82e-13 | 70.9 |
MsaG004593 | MtrunA17_Chr2g0290991 | 60.000 | 55 | 22 | 0 | 211 | 265 | 39 | 93 | 6.38e-13 | 68.9 |
MsaG004593 | MtrunA17_Chr8g0356501 | 52.941 | 68 | 31 | 1 | 211 | 278 | 37 | 103 | 6.84e-13 | 69.3 |
MsaG004593 | MtrunA17_Chr1g0190301 | 50.794 | 63 | 31 | 0 | 211 | 273 | 175 | 237 | 7.69e-13 | 69.3 |
MsaG004593 | MtrunA17_Chr4g0031961 | 43.243 | 74 | 41 | 1 | 207 | 280 | 127 | 199 | 8.60e-13 | 68.6 |
MsaG004593 | MtrunA17_Chr6g0461641 | 48.529 | 68 | 35 | 0 | 211 | 278 | 42 | 109 | 1.20e-12 | 68.6 |
MsaG004593 | MtrunA17_Chr7g0255711 | 40.244 | 82 | 45 | 2 | 188 | 269 | 71 | 148 | 1.26e-12 | 67.8 |
MsaG004593 | MtrunA17_Chr2g0310011 | 60.000 | 55 | 22 | 0 | 211 | 265 | 35 | 89 | 1.26e-12 | 68.6 |
MsaG004593 | MtrunA17_Chr1g0175081 | 39.744 | 78 | 32 | 1 | 188 | 265 | 14 | 76 | 1.43e-12 | 63.5 |
MsaG004593 | MtrunA17_Chr2g0321461 | 56.364 | 55 | 24 | 0 | 211 | 265 | 45 | 99 | 1.43e-12 | 68.6 |
MsaG004593 | MtrunA17_Chr4g0042451 | 58.182 | 55 | 23 | 0 | 211 | 265 | 17 | 71 | 1.44e-12 | 68.2 |
MsaG004593 | MtrunA17_Chr1g0175091 | 51.667 | 60 | 29 | 0 | 211 | 270 | 258 | 317 | 1.48e-12 | 68.6 |
MsaG004593 | MtrunA17_Chr1g0149831 | 45.588 | 68 | 33 | 1 | 209 | 276 | 126 | 189 | 1.51e-12 | 66.6 |
MsaG004593 | MtrunA17_Chr7g0275891 | 42.857 | 84 | 36 | 2 | 209 | 280 | 189 | 272 | 1.82e-12 | 67.8 |
MsaG004593 | MtrunA17_Chr4g0040481 | 37.895 | 95 | 46 | 2 | 209 | 303 | 156 | 237 | 2.99e-12 | 67.8 |
MsaG004593 | MtrunA17_Chr4g0009901 | 48.571 | 70 | 35 | 1 | 200 | 269 | 157 | 225 | 3.40e-12 | 66.2 |
MsaG004593 | MtrunA17_Chr1g0197171 | 58.182 | 55 | 23 | 0 | 211 | 265 | 44 | 98 | 3.92e-12 | 66.2 |
MsaG004593 | MtrunA17_Chr8g0376881 | 46.479 | 71 | 37 | 1 | 210 | 280 | 208 | 277 | 5.60e-12 | 67.0 |
MsaG004593 | MtrunA17_Chr2g0324891 | 45.070 | 71 | 38 | 1 | 209 | 279 | 159 | 228 | 5.77e-12 | 66.6 |
MsaG004593 | MtrunA17_Chr5g0409731 | 50.820 | 61 | 28 | 1 | 211 | 269 | 25 | 85 | 2.00e-11 | 64.3 |
MsaG004593 | MtrunA17_Chr4g0009981 | 42.857 | 77 | 43 | 1 | 210 | 286 | 115 | 190 | 2.25e-11 | 63.5 |
MsaG004593 | MtrunA17_Chr3g0123131 | 40.698 | 86 | 45 | 2 | 200 | 280 | 183 | 267 | 2.78e-11 | 65.1 |
MsaG004593 | MtrunA17_Chr6g0473731 | 43.243 | 74 | 41 | 1 | 210 | 283 | 94 | 166 | 2.97e-11 | 64.7 |
MsaG004593 | MtrunA17_Chr7g0258551 | 46.269 | 67 | 36 | 0 | 211 | 277 | 212 | 278 | 4.05e-11 | 63.9 |
MsaG004593 | MtrunA17_Chr2g0288601 | 55.102 | 49 | 22 | 0 | 213 | 261 | 73 | 121 | 5.12e-11 | 60.1 |
MsaG004593 | MtrunA17_Chr4g0009851 | 40.506 | 79 | 46 | 1 | 208 | 286 | 166 | 243 | 7.03e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004593 | AT1G68670.1 | 47.929 | 338 | 126 | 12 | 10 | 326 | 16 | 324 | 1.45e-79 | 248 |
MsaG004593 | AT1G25550.1 | 46.386 | 332 | 125 | 11 | 10 | 328 | 20 | 311 | 1.60e-77 | 243 |
MsaG004593 | AT3G25790.1 | 43.869 | 367 | 166 | 8 | 10 | 372 | 20 | 350 | 5.98e-75 | 236 |
MsaG004593 | AT1G13300.1 | 43.207 | 368 | 148 | 12 | 11 | 368 | 20 | 336 | 9.28e-71 | 225 |
MsaG004593 | AT1G25550.2 | 49.231 | 260 | 104 | 8 | 10 | 261 | 20 | 259 | 1.03e-66 | 213 |
MsaG004593 | AT3G25790.2 | 46.457 | 254 | 109 | 4 | 9 | 261 | 19 | 246 | 2.15e-56 | 185 |
MsaG004593 | AT2G03500.1 | 35.802 | 324 | 126 | 9 | 8 | 294 | 36 | 314 | 2.03e-48 | 169 |
MsaG004593 | AT4G37180.1 | 33.935 | 277 | 109 | 8 | 11 | 269 | 48 | 268 | 3.14e-33 | 127 |
MsaG004593 | AT4G37180.2 | 33.574 | 277 | 117 | 8 | 11 | 269 | 48 | 275 | 1.11e-30 | 120 |
MsaG004593 | AT1G49560.1 | 32.542 | 295 | 132 | 9 | 10 | 293 | 30 | 268 | 5.25e-30 | 118 |
MsaG004593 | AT4G37180.3 | 33.086 | 269 | 106 | 8 | 11 | 261 | 48 | 260 | 1.51e-28 | 112 |
MsaG004593 | AT1G49560.2 | 31.939 | 263 | 118 | 8 | 10 | 261 | 30 | 242 | 4.20e-23 | 97.8 |
MsaG004593 | AT2G01060.1 | 57.812 | 64 | 27 | 0 | 211 | 274 | 15 | 78 | 2.19e-15 | 76.3 |
MsaG004593 | AT3G16857.3 | 35.252 | 139 | 79 | 3 | 199 | 336 | 155 | 283 | 8.36e-15 | 76.3 |
MsaG004593 | AT3G16857.2 | 34.752 | 141 | 81 | 3 | 199 | 338 | 225 | 355 | 8.93e-15 | 76.3 |
MsaG004593 | AT3G16857.1 | 34.752 | 141 | 81 | 3 | 199 | 338 | 225 | 355 | 1.04e-14 | 76.3 |
MsaG004593 | AT5G58080.1 | 50.000 | 66 | 32 | 1 | 204 | 269 | 187 | 251 | 4.30e-14 | 74.3 |
MsaG004593 | AT3G04030.1 | 53.846 | 65 | 30 | 0 | 211 | 275 | 45 | 109 | 9.38e-14 | 72.4 |
MsaG004593 | AT3G04030.3 | 53.846 | 65 | 30 | 0 | 211 | 275 | 45 | 109 | 1.10e-13 | 72.4 |
MsaG004593 | AT2G25180.1 | 31.902 | 163 | 94 | 5 | 209 | 356 | 193 | 353 | 1.25e-13 | 72.8 |
MsaG004593 | AT5G05090.1 | 45.570 | 79 | 41 | 2 | 192 | 269 | 61 | 138 | 1.90e-13 | 70.5 |
MsaG004593 | AT5G06800.3 | 53.226 | 62 | 29 | 0 | 211 | 272 | 192 | 253 | 2.98e-13 | 70.1 |
MsaG004593 | AT5G18240.2 | 58.182 | 55 | 23 | 0 | 211 | 265 | 45 | 99 | 3.82e-13 | 70.9 |
MsaG004593 | AT5G18240.3 | 58.182 | 55 | 23 | 0 | 211 | 265 | 45 | 99 | 3.82e-13 | 70.9 |
MsaG004593 | AT5G18240.1 | 58.182 | 55 | 23 | 0 | 211 | 265 | 45 | 99 | 4.20e-13 | 70.5 |
MsaG004593 | AT5G18240.4 | 58.182 | 55 | 23 | 0 | 211 | 265 | 45 | 99 | 4.20e-13 | 70.5 |
MsaG004593 | AT5G18240.5 | 58.182 | 55 | 23 | 0 | 211 | 265 | 45 | 99 | 4.37e-13 | 70.5 |
MsaG004593 | AT2G01760.3 | 44.156 | 77 | 42 | 1 | 210 | 286 | 134 | 209 | 4.93e-13 | 69.7 |
MsaG004593 | AT5G44190.2 | 43.750 | 80 | 44 | 1 | 200 | 279 | 136 | 214 | 6.27e-13 | 69.7 |
MsaG004593 | AT2G01760.2 | 44.156 | 77 | 42 | 1 | 210 | 286 | 227 | 302 | 6.88e-13 | 70.1 |
MsaG004593 | AT5G44190.1 | 43.750 | 80 | 44 | 1 | 200 | 279 | 136 | 214 | 7.18e-13 | 69.7 |
MsaG004593 | AT2G01760.1 | 44.156 | 77 | 42 | 1 | 210 | 286 | 199 | 274 | 7.73e-13 | 69.7 |
MsaG004593 | AT5G06800.1 | 53.226 | 62 | 29 | 0 | 211 | 272 | 192 | 253 | 1.02e-12 | 69.3 |
MsaG004593 | AT3G10760.1 | 44.444 | 81 | 43 | 2 | 190 | 269 | 83 | 162 | 1.06e-12 | 68.9 |
MsaG004593 | AT5G06800.2 | 53.226 | 62 | 29 | 0 | 211 | 272 | 192 | 253 | 1.07e-12 | 69.3 |
MsaG004593 | AT2G40970.1 | 45.070 | 71 | 38 | 1 | 199 | 269 | 93 | 162 | 1.12e-12 | 67.8 |
MsaG004593 | AT3G46640.3 | 33.113 | 151 | 92 | 4 | 134 | 276 | 59 | 208 | 1.32e-12 | 68.6 |
MsaG004593 | AT3G46640.2 | 46.269 | 67 | 35 | 1 | 210 | 276 | 143 | 208 | 1.55e-12 | 68.2 |
MsaG004593 | AT3G46640.1 | 46.269 | 67 | 35 | 1 | 210 | 276 | 143 | 208 | 1.55e-12 | 68.2 |
MsaG004593 | AT5G45580.2 | 44.595 | 74 | 41 | 0 | 211 | 284 | 23 | 96 | 1.61e-12 | 67.8 |
MsaG004593 | AT5G45580.1 | 44.595 | 74 | 41 | 0 | 211 | 284 | 7 | 80 | 1.62e-12 | 67.4 |
MsaG004593 | AT1G79430.2 | 60.000 | 55 | 22 | 0 | 211 | 265 | 34 | 88 | 1.65e-12 | 68.6 |
MsaG004593 | AT3G04450.3 | 51.667 | 60 | 29 | 0 | 211 | 270 | 238 | 297 | 1.73e-12 | 68.2 |
MsaG004593 | AT3G24120.1 | 58.182 | 55 | 23 | 0 | 211 | 265 | 41 | 95 | 2.41e-12 | 67.4 |
MsaG004593 | AT5G59570.2 | 38.318 | 107 | 64 | 2 | 163 | 269 | 94 | 198 | 2.50e-12 | 67.4 |
MsaG004593 | AT5G59570.1 | 38.318 | 107 | 64 | 2 | 163 | 269 | 94 | 198 | 2.50e-12 | 67.4 |
MsaG004593 | AT5G29000.4 | 49.206 | 63 | 32 | 0 | 211 | 273 | 231 | 293 | 2.59e-12 | 67.4 |
MsaG004593 | AT3G24120.2 | 58.182 | 55 | 23 | 0 | 211 | 265 | 41 | 95 | 2.82e-12 | 67.4 |
MsaG004593 | AT4G13640.2 | 58.182 | 55 | 23 | 0 | 211 | 265 | 37 | 91 | 2.88e-12 | 67.4 |
MsaG004593 | AT4G13640.1 | 58.182 | 55 | 23 | 0 | 211 | 265 | 37 | 91 | 2.99e-12 | 67.0 |
MsaG004593 | AT3G13040.3 | 52.459 | 61 | 29 | 0 | 210 | 270 | 240 | 300 | 3.16e-12 | 68.2 |
MsaG004593 | AT3G13040.1 | 52.459 | 61 | 29 | 0 | 210 | 270 | 240 | 300 | 3.16e-12 | 68.2 |
MsaG004593 | AT3G13040.2 | 52.459 | 61 | 29 | 0 | 210 | 270 | 240 | 300 | 3.16e-12 | 68.2 |
MsaG004593 | AT3G04450.1 | 51.667 | 60 | 29 | 0 | 211 | 270 | 238 | 297 | 3.42e-12 | 67.8 |
MsaG004593 | AT3G04450.4 | 51.667 | 60 | 29 | 0 | 211 | 270 | 198 | 257 | 4.06e-12 | 67.4 |
MsaG004593 | AT3G04450.2 | 51.667 | 60 | 29 | 0 | 211 | 270 | 198 | 257 | 4.06e-12 | 67.4 |
MsaG004593 | AT2G20570.1 | 47.945 | 73 | 37 | 1 | 207 | 279 | 149 | 220 | 4.30e-12 | 67.4 |
MsaG004593 | AT5G29000.2 | 49.206 | 63 | 32 | 0 | 211 | 273 | 231 | 293 | 6.21e-12 | 67.0 |
MsaG004593 | AT3G04030.2 | 52.308 | 65 | 30 | 1 | 211 | 275 | 45 | 108 | 6.41e-12 | 67.0 |
MsaG004593 | AT4G28610.1 | 51.667 | 60 | 29 | 0 | 211 | 270 | 225 | 284 | 6.89e-12 | 67.0 |
MsaG004593 | AT5G29000.1 | 49.206 | 63 | 32 | 0 | 211 | 273 | 188 | 250 | 7.00e-12 | 66.6 |
MsaG004593 | AT5G29000.3 | 49.206 | 63 | 32 | 0 | 211 | 273 | 188 | 250 | 7.00e-12 | 66.6 |
MsaG004593 | AT3G12730.1 | 56.364 | 55 | 24 | 0 | 211 | 265 | 23 | 77 | 8.68e-12 | 65.1 |
MsaG004593 | AT2G42660.1 | 52.632 | 57 | 27 | 0 | 216 | 272 | 55 | 111 | 1.16e-11 | 64.7 |
MsaG004593 | AT2G38300.1 | 51.923 | 52 | 25 | 0 | 213 | 264 | 56 | 107 | 1.95e-11 | 65.1 |
MsaG004593 | AT4G31920.1 | 42.105 | 76 | 43 | 1 | 204 | 279 | 176 | 250 | 2.36e-11 | 65.5 |
MsaG004593 | AT2G06020.1 | 50.909 | 55 | 27 | 0 | 211 | 265 | 86 | 140 | 2.87e-11 | 64.3 |
MsaG004593 | AT1G49190.1 | 36.486 | 74 | 44 | 1 | 196 | 266 | 200 | 273 | 5.96e-11 | 63.9 |
MsaG004593 | AT4G04605.1 | 51.923 | 52 | 25 | 0 | 213 | 264 | 16 | 67 | 7.97e-11 | 62.0 |
Find 77 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTAACTCTATCTTCTTTA+TGG | 0.063110 | 1:+71394786 | None:intergenic |
CACAATGCAGCGTTTCAAAA+TGG | 0.179894 | 1:-71395525 | None:intergenic |
ACAAAAGTGGTTGCACCTTC+TGG | 0.247597 | 1:-71393969 | MsaT004593.1:CDS |
CATATCTACAAACCTGTAAA+TGG | 0.279375 | 1:+71394377 | None:intergenic |
TGAAGTCAAAAGCCATTTAC+AGG | 0.284068 | 1:-71394389 | MsaT004593.1:intron |
AACGAAAGAGGAAGTTCTTT+AGG | 0.297245 | 1:+71395446 | None:intergenic |
GATGTCTCCAACATTGTTAC+TGG | 0.321828 | 1:+71394682 | None:intergenic |
ATTACCTCTCTGATTTGCTT+TGG | 0.356836 | 1:+71394436 | None:intergenic |
CTTTCGTTATTTGTTGAACT+TGG | 0.382926 | 1:+71394095 | None:intergenic |
GGCTTAGATCTGTTCAGTTA+TGG | 0.389861 | 1:-71395045 | MsaT004593.1:CDS |
CCCCACCATACTCTTGTTGT+TGG | 0.395076 | 1:+71394021 | None:intergenic |
GGAATAAACTCTTCTAAAAC+AGG | 0.409660 | 1:+71395187 | None:intergenic |
TTTGTCCAACAACAAGAGTA+TGG | 0.414336 | 1:-71394026 | MsaT004593.1:CDS |
ATTATTACCTCTTCAGATGA+AGG | 0.417768 | 1:+71395013 | None:intergenic |
GACGTTCTTGTTCTAATGCT+TGG | 0.420567 | 1:+71395486 | None:intergenic |
ACAATGCAGCGTTTCAAAAT+GGG | 0.423030 | 1:-71395524 | MsaT004593.1:CDS |
GTAGCTTCATCAACAACAAC+AGG | 0.429695 | 1:-71393999 | MsaT004593.1:CDS |
TGCTCAAACCTCTTGAACTC+TGG | 0.432408 | 1:+71393897 | None:intergenic |
GCAGCGACGGTGCTGGTCGC+AGG | 0.434166 | 1:-71394630 | MsaT004593.1:CDS |
GTTTATTCCAATTAAGAAAA+GGG | 0.437351 | 1:-71395173 | MsaT004593.1:CDS |
GTTGCACAAGCGATTCTTGA+AGG | 0.440339 | 1:-71394606 | MsaT004593.1:CDS |
AGTTTATTCCAATTAAGAAA+AGG | 0.446516 | 1:-71395174 | MsaT004593.1:CDS |
ACTCTATCTTCTTTATGGAA+TGG | 0.449526 | 1:+71394791 | None:intergenic |
GCTTGTCGACAACAATTGTC+TGG | 0.459321 | 1:-71395277 | MsaT004593.1:CDS |
CATCAAAAGAGACGAGAAAG+AGG | 0.461312 | 1:-71394663 | MsaT004593.1:CDS |
TTGAAGGCGCTTCAGCAACT+TGG | 0.469776 | 1:-71394590 | MsaT004593.1:CDS |
AGAGAGGTAATGAATGTTGA+TGG | 0.478733 | 1:-71394424 | MsaT004593.1:CDS |
GCATTCAATCTCAGATGAAA+GGG | 0.480171 | 1:-71393877 | MsaT004593.1:CDS |
AGGTGCTGCTGTTTGTGAAT+TGG | 0.480961 | 1:+71394070 | None:intergenic |
CTCTCTGATTTGCTTTGGTG+TGG | 0.488332 | 1:+71394441 | None:intergenic |
GTGTTGGAATTGAAGAGAAA+TGG | 0.488831 | 1:-71394836 | MsaT004593.1:CDS |
ACAACTGAGTATAATTTGAA+TGG | 0.489356 | 1:-71395250 | MsaT004593.1:CDS |
TCAATAACCAGGGGAAGTAT+TGG | 0.491273 | 1:+71393788 | None:intergenic |
TTGGTCTTCTAGTATGCAAC+CGG | 0.498211 | 1:+71394114 | None:intergenic |
ACAAGTGAATTGTTAAGTAA+AGG | 0.498649 | 1:-71394758 | MsaT004593.1:CDS |
ATGTTGCCTACAAGGACAAA+AGG | 0.503411 | 1:+71394050 | None:intergenic |
AAGGCGCTTCAGCAACTTGG+TGG | 0.504237 | 1:-71394587 | MsaT004593.1:CDS |
ACTTGAGGATGTGTGGCTAC+TGG | 0.518302 | 1:+71393936 | None:intergenic |
TTCTTAATTGTAGCAACTTG+AGG | 0.518381 | 1:+71393921 | None:intergenic |
AGCATTCAATCTCAGATGAA+AGG | 0.522044 | 1:-71393878 | MsaT004593.1:CDS |
AAGAGAAATGGAAGTGGTGG+TGG | 0.523432 | 1:-71394824 | MsaT004593.1:CDS |
TGTGTAGAGGATGAAGATGT+AGG | 0.529070 | 1:+71393819 | None:intergenic |
TTAAGAAACCAGAGTTCAAG+AGG | 0.534779 | 1:-71393905 | MsaT004593.1:CDS |
TCCAACAACAAGAGTATGGT+GGG | 0.538170 | 1:-71394022 | MsaT004593.1:CDS |
AGAGAAAGCAGCGACGGTGC+TGG | 0.540249 | 1:-71394637 | MsaT004593.1:CDS |
AGAACTCACGGCAGCTACAC+CGG | 0.545612 | 1:+71394721 | None:intergenic |
GTAACGAGTTCTAACGAAAG+AGG | 0.565892 | 1:+71395434 | None:intergenic |
GGCAGCTACACCGGTCGAAG+AGG | 0.574491 | 1:+71394730 | None:intergenic |
AAAATTAAAACTCAATAACC+AGG | 0.575545 | 1:+71393777 | None:intergenic |
ATAATAAGAAGAAATCTGAC+TGG | 0.576819 | 1:-71395066 | MsaT004593.1:CDS |
AGGAAAAGAGAAAGCAGCGA+CGG | 0.577313 | 1:-71394643 | MsaT004593.1:CDS |
ACTACTACCAATACTTCCCC+TGG | 0.577357 | 1:-71393795 | MsaT004593.1:CDS |
TAAGAAAACAGTGCCTGTGT+TGG | 0.581215 | 1:-71394852 | MsaT004593.1:CDS |
TTCAGATCCTTCATCTGAAG+AGG | 0.584122 | 1:-71395020 | MsaT004593.1:intron |
AAAGGACAACCCTCTTCGAC+CGG | 0.587220 | 1:-71394740 | MsaT004593.1:CDS |
AAATTAAAACTCAATAACCA+GGG | 0.590216 | 1:+71393778 | None:intergenic |
GCAGCTACACCGGTCGAAGA+GGG | 0.597437 | 1:+71394731 | None:intergenic |
TTTCTCTTCAATTCCAACAC+AGG | 0.600323 | 1:+71394839 | None:intergenic |
AACAGGGGAAATGACAAAAG+TGG | 0.604173 | 1:-71393982 | MsaT004593.1:CDS |
ATTGGTAGTAGTATGTGTAG+AGG | 0.610237 | 1:+71393806 | None:intergenic |
AATGTCACCAGTAACAATGT+TGG | 0.610482 | 1:-71394689 | MsaT004593.1:CDS |
GTCCAACAACAAGAGTATGG+TGG | 0.618792 | 1:-71394023 | MsaT004593.1:CDS |
GAACAGACAACATCAACAGA+TGG | 0.623810 | 1:-71395211 | MsaT004593.1:CDS |
ATTAGCCGCATTAGAACTCA+CGG | 0.629576 | 1:+71394709 | None:intergenic |
TCGTTAGAACTCGTTACACA+AGG | 0.638093 | 1:-71395428 | MsaT004593.1:intron |
GAAAGGGGTAATAACAGTGA+AGG | 0.640994 | 1:-71393861 | MsaT004593.1:CDS |
TTGAAGAGAAATGGAAGTGG+TGG | 0.651388 | 1:-71394827 | MsaT004593.1:CDS |
CATTCAATCTCAGATGAAAG+GGG | 0.655574 | 1:-71393876 | MsaT004593.1:CDS |
ACTGGTGCATAGATTCCAGA+AGG | 0.656305 | 1:+71393954 | None:intergenic |
AGCTGCCGTGAGTTCTAATG+CGG | 0.671481 | 1:-71394714 | MsaT004593.1:CDS |
TGTAGCAACTTGAGGATGTG+TGG | 0.683531 | 1:+71393929 | None:intergenic |
GAATTGAAGAGAAATGGAAG+TGG | 0.689165 | 1:-71394830 | MsaT004593.1:CDS |
TAGCTTCATCAACAACAACA+GGG | 0.693117 | 1:-71393998 | MsaT004593.1:CDS |
AATTAAAACTCAATAACCAG+GGG | 0.700665 | 1:+71393779 | None:intergenic |
CCAACAACAAGAGTATGGTG+GGG | 0.702776 | 1:-71394021 | MsaT004593.1:CDS |
AGCTTCATCAACAACAACAG+GGG | 0.709783 | 1:-71393997 | MsaT004593.1:CDS |
CACACCAAAGCAAATCAGAG+AGG | 0.720773 | 1:-71394440 | MsaT004593.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 71393788 | 71395543 | 71393788 | ID=MsaG004593 |
Chr1 | mRNA | 71393788 | 71395543 | 71393788 | ID=MsaT004593.1;Parent=MsaG004593 |
Chr1 | exon | 71393788 | 71394141 | 71393788 | ID=MsaT004593.1.exon5;Parent=MsaT004593.1 |
Chr1 | CDS | 71393788 | 71394141 | 71393788 | ID=cds.MsaT004593.1;Parent=MsaT004593.1 |
Chr1 | exon | 71394390 | 71394466 | 71394390 | ID=MsaT004593.1.exon4;Parent=MsaT004593.1 |
Chr1 | CDS | 71394390 | 71394466 | 71394390 | ID=cds.MsaT004593.1;Parent=MsaT004593.1 |
Chr1 | exon | 71394579 | 71394882 | 71394579 | ID=MsaT004593.1.exon3;Parent=MsaT004593.1 |
Chr1 | CDS | 71394579 | 71394882 | 71394579 | ID=cds.MsaT004593.1;Parent=MsaT004593.1 |
Chr1 | exon | 71395021 | 71395307 | 71395021 | ID=MsaT004593.1.exon2;Parent=MsaT004593.1 |
Chr1 | CDS | 71395021 | 71395307 | 71395021 | ID=cds.MsaT004593.1;Parent=MsaT004593.1 |
Chr1 | exon | 71395429 | 71395543 | 71395429 | ID=MsaT004593.1.exon1;Parent=MsaT004593.1 |
Chr1 | CDS | 71395429 | 71395543 | 71395429 | ID=cds.MsaT004593.1;Parent=MsaT004593.1 |
Gene Sequence |
Protein sequence |