Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004675 | RHN81490.1 | 89.537 | 497 | 16 | 4 | 1 | 463 | 76 | 570 | 0.0 | 912 |
MsaG004675 | RHN81490.1 | 93.750 | 48 | 3 | 0 | 449 | 496 | 647 | 694 | 1.41e-15 | 92.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004675 | sp|Q93YR9|ARFP_ARATH | 65.647 | 425 | 132 | 6 | 1 | 418 | 1 | 418 | 0.0 | 563 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004675 | tr|A0A396JT48|A0A396JT48_MEDTR | 89.537 | 497 | 16 | 4 | 1 | 463 | 76 | 570 | 0.0 | 912 |
MsaG004675 | tr|A0A396JT48|A0A396JT48_MEDTR | 93.750 | 48 | 3 | 0 | 449 | 496 | 647 | 694 | 6.74e-16 | 92.4 |
Gene ID | Type | Classification |
---|---|---|
MsaG004675 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004675 | MtrunA17_Chr1g0199681 | 89.537 | 497 | 16 | 4 | 1 | 463 | 76 | 570 | 0.0 | 912 |
MsaG004675 | MtrunA17_Chr1g0199681 | 93.750 | 48 | 3 | 0 | 449 | 496 | 647 | 694 | 1.30e-19 | 92.4 |
MsaG004675 | MtrunA17_Chr2g0326761 | 61.491 | 483 | 145 | 8 | 10 | 458 | 2 | 477 | 0.0 | 561 |
MsaG004675 | MtrunA17_Chr4g0028971 | 65.275 | 455 | 120 | 10 | 8 | 427 | 1 | 452 | 0.0 | 557 |
MsaG004675 | MtrunA17_Chr1g0181211 | 60.619 | 452 | 138 | 7 | 13 | 427 | 21 | 469 | 0.0 | 526 |
MsaG004675 | MtrunA17_Chr7g0264171 | 55.142 | 457 | 164 | 8 | 10 | 427 | 22 | 476 | 2.25e-165 | 481 |
MsaG004675 | MtrunA17_Chr7g0264161 | 54.706 | 340 | 111 | 4 | 28 | 363 | 1 | 301 | 9.04e-126 | 369 |
MsaG004675 | MtrunA17_Chr3g0115271 | 44.124 | 451 | 194 | 10 | 16 | 426 | 16 | 448 | 9.96e-113 | 345 |
MsaG004675 | MtrunA17_Chr5g0424931 | 42.963 | 405 | 190 | 11 | 16 | 408 | 16 | 391 | 1.85e-96 | 301 |
MsaG004675 | MtrunA17_Chr5g0417281 | 36.887 | 469 | 185 | 12 | 11 | 426 | 3 | 413 | 6.33e-85 | 271 |
MsaG004675 | MtrunA17_Chr5g0433301 | 39.286 | 392 | 190 | 8 | 9 | 391 | 14 | 366 | 1.53e-81 | 270 |
MsaG004675 | MtrunA17_Chr4g0070181 | 40.157 | 381 | 180 | 9 | 13 | 385 | 17 | 357 | 5.26e-81 | 273 |
MsaG004675 | MtrunA17_Chr2g0282961 | 39.474 | 380 | 176 | 8 | 15 | 383 | 51 | 387 | 7.46e-81 | 263 |
MsaG004675 | MtrunA17_Chr5g0436761 | 35.714 | 462 | 211 | 11 | 8 | 435 | 1 | 410 | 4.49e-79 | 254 |
MsaG004675 | MtrunA17_Chr2g0285461 | 38.213 | 403 | 202 | 8 | 9 | 403 | 13 | 376 | 7.35e-79 | 264 |
MsaG004675 | MtrunA17_Chr3g0109391 | 38.918 | 388 | 189 | 8 | 13 | 391 | 20 | 368 | 1.19e-78 | 262 |
MsaG004675 | MtrunA17_Chr2g0289221 | 39.695 | 393 | 168 | 10 | 16 | 393 | 17 | 355 | 1.26e-78 | 249 |
MsaG004675 | MtrunA17_Chr4g0046371 | 36.287 | 474 | 216 | 14 | 12 | 459 | 33 | 446 | 8.39e-78 | 257 |
MsaG004675 | MtrunA17_Chr8g0376771 | 37.811 | 402 | 204 | 8 | 9 | 403 | 13 | 375 | 1.60e-77 | 260 |
MsaG004675 | MtrunA17_Chr1g0178011 | 36.476 | 403 | 203 | 7 | 14 | 410 | 7 | 362 | 3.85e-77 | 249 |
MsaG004675 | MtrunA17_Chr1g0156321 | 38.750 | 400 | 192 | 11 | 14 | 403 | 38 | 394 | 1.47e-75 | 254 |
MsaG004675 | MtrunA17_Chr8g0385791 | 37.000 | 400 | 204 | 7 | 10 | 401 | 50 | 409 | 8.48e-73 | 246 |
MsaG004675 | MtrunA17_Chr5g0417211 | 39.142 | 373 | 155 | 9 | 16 | 373 | 9 | 324 | 2.75e-72 | 235 |
MsaG004675 | MtrunA17_Chr2g0277461 | 33.974 | 468 | 230 | 14 | 19 | 468 | 13 | 419 | 3.41e-71 | 233 |
MsaG004675 | MtrunA17_Chr8g0389081 | 38.660 | 388 | 188 | 8 | 9 | 386 | 22 | 369 | 5.20e-71 | 244 |
MsaG004675 | MtrunA17_Chr2g0301251 | 39.578 | 379 | 183 | 11 | 14 | 385 | 18 | 357 | 2.40e-70 | 243 |
MsaG004675 | MtrunA17_Chr4g0029671 | 37.288 | 413 | 180 | 10 | 19 | 403 | 54 | 415 | 2.87e-70 | 239 |
MsaG004675 | MtrunA17_Chr2g0326281 | 37.346 | 407 | 182 | 9 | 19 | 393 | 56 | 421 | 5.23e-70 | 238 |
MsaG004675 | MtrunA17_Chr2g0276781 | 36.493 | 422 | 209 | 9 | 11 | 420 | 15 | 389 | 1.11e-69 | 235 |
MsaG004675 | MtrunA17_Chr4g0009751 | 37.324 | 426 | 207 | 13 | 15 | 425 | 15 | 395 | 1.22e-68 | 231 |
MsaG004675 | MtrunA17_Chr7g0239061 | 35.610 | 410 | 206 | 12 | 8 | 405 | 3 | 366 | 5.61e-62 | 214 |
MsaG004675 | MtrunA17_Chr8g0346711 | 36.580 | 421 | 213 | 11 | 16 | 426 | 26 | 402 | 1.04e-61 | 213 |
MsaG004675 | MtrunA17_Chr5g0425261 | 35.509 | 383 | 187 | 14 | 16 | 389 | 9 | 340 | 1.75e-57 | 195 |
MsaG004675 | MtrunA17_Chr5g0424801 | 34.921 | 378 | 187 | 13 | 16 | 384 | 9 | 336 | 8.71e-57 | 193 |
MsaG004675 | MtrunA17_Chr2g0277531 | 33.894 | 357 | 166 | 12 | 19 | 363 | 20 | 318 | 1.25e-52 | 180 |
MsaG004675 | MtrunA17_Chr5g0425661 | 41.584 | 202 | 97 | 4 | 16 | 206 | 34 | 225 | 1.56e-47 | 164 |
MsaG004675 | MtrunA17_Chr5g0424741 | 31.991 | 422 | 206 | 16 | 16 | 400 | 9 | 386 | 3.52e-46 | 168 |
MsaG004675 | MtrunA17_Chr8g0356211 | 33.333 | 258 | 133 | 6 | 126 | 383 | 2 | 220 | 1.06e-36 | 137 |
MsaG004675 | MtrunA17_Chr5g0424791 | 35.526 | 152 | 87 | 4 | 63 | 214 | 11 | 151 | 1.59e-20 | 88.2 |
MsaG004675 | MtrunA17_Chr5g0425651 | 41.739 | 115 | 60 | 3 | 277 | 387 | 1 | 112 | 5.44e-20 | 85.9 |
MsaG004675 | MtrunA17_Chr1g0178071 | 35.780 | 109 | 67 | 2 | 113 | 218 | 71 | 179 | 2.60e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004675 | AT4G30080.1 | 65.647 | 425 | 132 | 6 | 1 | 418 | 1 | 418 | 0.0 | 563 |
MsaG004675 | AT2G28350.1 | 67.391 | 414 | 99 | 8 | 13 | 405 | 4 | 402 | 0.0 | 540 |
MsaG004675 | AT2G28350.2 | 67.391 | 414 | 99 | 8 | 13 | 405 | 4 | 402 | 0.0 | 540 |
MsaG004675 | AT1G77850.1 | 43.990 | 391 | 202 | 6 | 16 | 401 | 16 | 394 | 7.10e-111 | 340 |
MsaG004675 | AT1G77850.2 | 43.990 | 391 | 202 | 6 | 16 | 401 | 16 | 394 | 8.85e-111 | 341 |
MsaG004675 | AT5G37020.2 | 38.918 | 388 | 189 | 8 | 13 | 391 | 16 | 364 | 8.74e-81 | 267 |
MsaG004675 | AT5G37020.1 | 38.918 | 388 | 189 | 8 | 13 | 391 | 16 | 364 | 2.68e-80 | 266 |
MsaG004675 | AT1G30330.3 | 39.012 | 405 | 197 | 10 | 9 | 403 | 14 | 378 | 3.31e-78 | 263 |
MsaG004675 | AT1G30330.2 | 39.012 | 405 | 197 | 10 | 9 | 403 | 14 | 378 | 3.31e-78 | 263 |
MsaG004675 | AT1G30330.1 | 38.500 | 400 | 197 | 9 | 13 | 403 | 17 | 376 | 5.27e-78 | 262 |
MsaG004675 | AT1G19220.1 | 39.948 | 388 | 187 | 9 | 5 | 385 | 9 | 357 | 9.65e-78 | 263 |
MsaG004675 | AT1G19850.2 | 39.119 | 386 | 179 | 9 | 11 | 383 | 35 | 377 | 1.42e-75 | 255 |
MsaG004675 | AT1G19850.1 | 39.119 | 386 | 179 | 9 | 11 | 383 | 46 | 388 | 1.46e-75 | 255 |
MsaG004675 | AT5G60450.2 | 36.967 | 422 | 203 | 9 | 8 | 409 | 30 | 408 | 1.80e-75 | 253 |
MsaG004675 | AT2G33860.1 | 37.079 | 445 | 221 | 13 | 15 | 449 | 52 | 447 | 2.72e-75 | 248 |
MsaG004675 | AT5G60450.1 | 37.470 | 411 | 196 | 8 | 18 | 409 | 64 | 432 | 3.43e-74 | 249 |
MsaG004675 | AT5G62000.4 | 34.773 | 463 | 248 | 8 | 13 | 466 | 55 | 472 | 3.85e-73 | 248 |
MsaG004675 | AT5G62000.2 | 34.773 | 463 | 248 | 8 | 13 | 466 | 55 | 472 | 5.12e-73 | 248 |
MsaG004675 | AT5G62000.5 | 34.773 | 463 | 248 | 8 | 13 | 466 | 55 | 472 | 5.12e-73 | 248 |
MsaG004675 | AT5G62000.3 | 34.773 | 463 | 248 | 8 | 13 | 466 | 55 | 472 | 5.12e-73 | 248 |
MsaG004675 | AT5G62000.1 | 34.773 | 463 | 248 | 8 | 13 | 466 | 55 | 472 | 5.12e-73 | 248 |
MsaG004675 | AT1G59750.4 | 39.005 | 382 | 183 | 8 | 15 | 387 | 18 | 358 | 1.52e-68 | 232 |
MsaG004675 | AT1G59750.2 | 39.005 | 382 | 183 | 8 | 15 | 387 | 18 | 358 | 1.76e-68 | 232 |
MsaG004675 | AT1G59750.1 | 39.005 | 382 | 183 | 8 | 15 | 387 | 18 | 358 | 1.83e-68 | 232 |
MsaG004675 | AT1G59750.3 | 39.005 | 382 | 183 | 8 | 15 | 387 | 18 | 358 | 1.83e-68 | 232 |
MsaG004675 | AT5G20730.2 | 37.065 | 402 | 195 | 12 | 13 | 403 | 18 | 372 | 7.67e-68 | 236 |
MsaG004675 | AT2G46530.1 | 38.155 | 401 | 178 | 14 | 16 | 404 | 18 | 360 | 6.10e-67 | 226 |
MsaG004675 | AT2G46530.3 | 38.155 | 401 | 178 | 14 | 16 | 404 | 39 | 381 | 9.51e-67 | 226 |
MsaG004675 | AT5G20730.1 | 36.973 | 403 | 195 | 13 | 13 | 403 | 18 | 373 | 2.28e-66 | 232 |
MsaG004675 | AT5G20730.3 | 36.973 | 403 | 195 | 13 | 13 | 403 | 18 | 373 | 2.32e-66 | 232 |
MsaG004675 | AT3G61830.1 | 36.765 | 408 | 196 | 11 | 7 | 403 | 13 | 369 | 3.09e-66 | 224 |
MsaG004675 | AT4G23980.2 | 37.760 | 384 | 187 | 10 | 16 | 390 | 9 | 349 | 3.31e-65 | 223 |
MsaG004675 | AT4G23980.1 | 37.760 | 384 | 187 | 10 | 16 | 390 | 9 | 349 | 4.17e-65 | 222 |
MsaG004675 | AT1G35540.1 | 34.069 | 408 | 218 | 9 | 12 | 413 | 20 | 382 | 6.21e-56 | 197 |
MsaG004675 | AT5G37020.3 | 37.662 | 308 | 151 | 6 | 86 | 391 | 1 | 269 | 7.94e-56 | 198 |
MsaG004675 | AT1G35520.1 | 35.897 | 390 | 193 | 12 | 12 | 393 | 20 | 360 | 1.56e-55 | 196 |
MsaG004675 | AT1G34310.1 | 35.897 | 390 | 193 | 11 | 12 | 393 | 20 | 360 | 1.98e-55 | 195 |
MsaG004675 | AT1G35240.1 | 35.433 | 381 | 189 | 12 | 12 | 383 | 20 | 352 | 9.01e-55 | 193 |
MsaG004675 | AT3G61830.2 | 37.644 | 348 | 162 | 10 | 60 | 403 | 22 | 318 | 1.44e-54 | 192 |
MsaG004675 | AT1G34390.1 | 35.385 | 390 | 193 | 12 | 12 | 393 | 20 | 358 | 6.97e-54 | 191 |
MsaG004675 | AT1G34170.1 | 33.417 | 398 | 206 | 12 | 19 | 406 | 25 | 373 | 1.35e-53 | 188 |
MsaG004675 | AT2G33860.2 | 38.732 | 284 | 138 | 4 | 118 | 401 | 2 | 249 | 2.01e-53 | 187 |
MsaG004675 | AT1G34410.1 | 35.000 | 380 | 192 | 11 | 12 | 383 | 20 | 352 | 5.46e-53 | 189 |
MsaG004675 | AT2G46530.2 | 40.370 | 270 | 116 | 8 | 117 | 383 | 36 | 263 | 1.77e-48 | 175 |
MsaG004675 | AT1G34170.2 | 31.910 | 398 | 186 | 12 | 19 | 406 | 25 | 347 | 5.66e-46 | 167 |
MsaG004675 | AT1G34170.3 | 31.910 | 398 | 186 | 12 | 19 | 406 | 25 | 347 | 2.85e-45 | 166 |
MsaG004675 | AT1G43950.1 | 40.654 | 214 | 108 | 7 | 12 | 217 | 20 | 222 | 1.11e-38 | 140 |
MsaG004675 | ATMG00940.1 | 37.736 | 159 | 83 | 5 | 205 | 358 | 1 | 148 | 7.74e-23 | 95.5 |
MsaG004675 | AT2G36080.4 | 34.234 | 111 | 69 | 2 | 112 | 218 | 32 | 142 | 1.01e-11 | 63.9 |
MsaG004675 | AT2G36080.2 | 34.234 | 111 | 69 | 2 | 112 | 218 | 32 | 142 | 1.01e-11 | 63.9 |
MsaG004675 | AT2G36080.3 | 34.234 | 111 | 69 | 2 | 112 | 218 | 32 | 142 | 2.00e-11 | 64.3 |
MsaG004675 | AT2G36080.1 | 34.234 | 111 | 69 | 2 | 112 | 218 | 32 | 142 | 2.25e-11 | 64.3 |
MsaG004675 | AT3G25730.1 | 32.824 | 131 | 76 | 2 | 118 | 246 | 183 | 303 | 3.17e-11 | 65.1 |
MsaG004675 | AT2G46870.1 | 34.906 | 106 | 62 | 2 | 110 | 215 | 27 | 125 | 6.34e-11 | 63.9 |
MsaG004675 | AT1G01030.2 | 36.842 | 95 | 59 | 1 | 113 | 207 | 51 | 144 | 9.93e-11 | 63.5 |
Find 97 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTAGGATTAGTTGGTTTA+TGG | 0.157206 | 1:+72540610 | MsaT004675.1:CDS |
TTTGAAGAAGATTGTTTCTT+TGG | 0.183552 | 1:+72539906 | MsaT004675.1:CDS |
ACAAACCTTGGTTTCTTTCT+TGG | 0.220376 | 1:-72541911 | None:intergenic |
AAATCAGATGGATTATTATT+TGG | 0.221410 | 1:-72542112 | None:intergenic |
GAGATCTTTGTGTTGGTATA+AGG | 0.249926 | 1:+72540243 | MsaT004675.1:CDS |
ACGTAGACTTCATCAGTTTC+AGG | 0.253211 | 1:-72539843 | None:intergenic |
GAGAGGTGGAACACGGGTTT+TGG | 0.257788 | 1:-72539781 | None:intergenic |
TGATGCAAAAGAACTATTAT+TGG | 0.261306 | 1:-72542056 | None:intergenic |
CTACAACAAGACATGTTTCT+TGG | 0.267352 | 1:+72542154 | MsaT004675.1:CDS |
TTCTCCTTGGCGCCTTCTTC+AGG | 0.267828 | 1:+72540679 | MsaT004675.1:CDS |
GGAGCCAGGCATGCTCAATT+TGG | 0.304628 | 1:+72542088 | MsaT004675.1:CDS |
TTGAAACTGAGGATTCTTCT+AGG | 0.307810 | 1:+72540594 | MsaT004675.1:CDS |
TCTAGGATTAGTTGGTTTAT+GGG | 0.316818 | 1:+72540611 | MsaT004675.1:CDS |
CACCATTGTTTGCATCAGAT+TGG | 0.343534 | 1:-72539983 | None:intergenic |
GCTGTAAACTGTGCTGTTAA+TGG | 0.368748 | 1:+72540449 | MsaT004675.1:CDS |
TTCTTTCTTGGAGGTGTGAA+TGG | 0.380455 | 1:-72541899 | None:intergenic |
TGAAGGCTCTCCTTGGTATA+AGG | 0.392410 | 1:+72542504 | MsaT004675.1:CDS |
TTTCTAATTCTTCTAGTACT+TGG | 0.397904 | 1:+72540306 | MsaT004675.1:CDS |
ATGCAAATTCAATGGTGTTC+TGG | 0.400255 | 1:+72540551 | MsaT004675.1:CDS |
GGAGAATCAGGCCAACGAAT+TGG | 0.402668 | 1:-72540662 | None:intergenic |
CTTTGGAAACAATGGCTTAG+AGG | 0.405587 | 1:+72539923 | MsaT004675.1:CDS |
AGGATTCTTCTAGGATTAGT+TGG | 0.407748 | 1:+72540603 | MsaT004675.1:CDS |
TTCGTTGGCCTGATTCTCCT+TGG | 0.409284 | 1:+72540666 | MsaT004675.1:CDS |
TTAGCAATAATTGTTTGAAC+AGG | 0.414237 | 1:-72540074 | None:intergenic |
AGAGCAAAGAAAGGTGGAAT+TGG | 0.414735 | 1:+72540266 | MsaT004675.1:CDS |
ACCATTGTTTGCATCAGATT+GGG | 0.415921 | 1:-72539982 | None:intergenic |
AGAAGGCGCCAAGGAGAATC+AGG | 0.419546 | 1:-72540674 | None:intergenic |
AAATGGTGGTAATGATTTGA+TGG | 0.424677 | 1:+72540397 | MsaT004675.1:CDS |
CAACACAAGCCTGATCTTGT+TGG | 0.424795 | 1:+72542532 | MsaT004675.1:CDS |
GTTGAGAATTCTTCTGATGA+AGG | 0.429943 | 1:+72542487 | MsaT004675.1:CDS |
AACCTTGGTTTCTTTCTTGG+AGG | 0.432289 | 1:-72541908 | None:intergenic |
CCTTTGTTTGGTGGTGGTGG+TGG | 0.436011 | 1:+72540341 | MsaT004675.1:CDS |
TCATCAGAAGAATTCTCAAC+TGG | 0.446809 | 1:-72542484 | None:intergenic |
GAAACCTTAACACAAAATTC+AGG | 0.450898 | 1:-72540512 | None:intergenic |
ATAGTCTCAGCACAGTATCT+AGG | 0.458408 | 1:-72540020 | None:intergenic |
TGGTCCAAATTGAGCATGCC+TGG | 0.458791 | 1:-72542092 | None:intergenic |
CGTAGACTTCATCAGTTTCA+GGG | 0.459745 | 1:-72539842 | None:intergenic |
TCACCTTTGTTTGGTGGTGG+TGG | 0.463200 | 1:+72540338 | MsaT004675.1:CDS |
AGTGCTTAGATTCACAACTA+TGG | 0.464164 | 1:+72539655 | MsaT004675.1:CDS |
AATGTCTTTGCAAAAGAAGC+TGG | 0.466988 | 1:-72539957 | None:intergenic |
AACCGTGTATCACCTTTGTT+TGG | 0.470136 | 1:+72540329 | MsaT004675.1:CDS |
AAATGTTACTGCATTGTGTA+TGG | 0.470847 | 1:+72542561 | MsaT004675.1:CDS |
TTGAAGGGAATTAAATCAGA+TGG | 0.471043 | 1:-72542124 | None:intergenic |
GCAATAATTGTTTGAACAGG+TGG | 0.472648 | 1:-72540071 | None:intergenic |
AAGTTTAGACATATCTATAG+AGG | 0.484340 | 1:+72540119 | MsaT004675.1:CDS |
AATGGTGAGAGATTGAAGTT+TGG | 0.485606 | 1:-72541881 | None:intergenic |
AATCACAAGAAGCTTGTTGC+TGG | 0.491007 | 1:+72540188 | MsaT004675.1:CDS |
AATCTGCAATGCAAATTCAA+TGG | 0.492272 | 1:+72540543 | MsaT004675.1:CDS |
GAAGAATCCTCAGTTTCAAA+AGG | 0.493790 | 1:-72540590 | None:intergenic |
CATCAAGCATACAGGGAGCC+AGG | 0.498276 | 1:+72542074 | MsaT004675.1:CDS |
TTGTTGTAGTAGCTTGTTGA+AGG | 0.499531 | 1:-72542140 | None:intergenic |
AATTCAGGAGTACTAGCTCT+TGG | 0.500520 | 1:-72540497 | None:intergenic |
GATTGTTTCTTTGGAAACAA+TGG | 0.500964 | 1:+72539915 | MsaT004675.1:CDS |
GTTTGTGGTTATGGATTCCA+TGG | 0.512063 | 1:+72539617 | MsaT004675.1:CDS |
CGTGTATCACCTTTGTTTGG+TGG | 0.513472 | 1:+72540332 | MsaT004675.1:CDS |
ATAATATTGTTACCTGAAGA+AGG | 0.514309 | 1:-72540691 | None:intergenic |
CAACTATGGCACGCATGTGC+TGG | 0.516615 | 1:+72539669 | MsaT004675.1:CDS |
TTTGGAAACAATGGCTTAGA+GGG | 0.516902 | 1:+72539924 | MsaT004675.1:CDS |
AAGATATGCATGGACAGTGT+TGG | 0.525936 | 1:+72540096 | MsaT004675.1:CDS |
GGTGGTTCTGGTTTCTTGTG+TGG | 0.526295 | 1:+72540359 | MsaT004675.1:CDS |
GCAAAGAAAGGTGGAATTGG+TGG | 0.533246 | 1:+72540269 | MsaT004675.1:CDS |
CTTCTGATGAAGGCTCTCCT+TGG | 0.533836 | 1:+72542497 | MsaT004675.1:CDS |
TAATGATTTGATGGGAAAAG+TGG | 0.533977 | 1:+72540406 | MsaT004675.1:CDS |
GTATCACCTTTGTTTGGTGG+TGG | 0.534706 | 1:+72540335 | MsaT004675.1:CDS |
GAAAATGGAGATCTTTGTGT+TGG | 0.538803 | 1:+72540236 | MsaT004675.1:CDS |
TTCATAGCAGAGATTCTACA+AGG | 0.548674 | 1:-72539807 | None:intergenic |
TGTTGTTGATCCTTATACCA+AGG | 0.550241 | 1:-72542514 | None:intergenic |
GTTGTCAAAAGATGTCTCCT+TGG | 0.557297 | 1:-72540146 | None:intergenic |
AAGAAAGGTGGAATTGGTGG+TGG | 0.559157 | 1:+72540272 | MsaT004675.1:CDS |
GAGACTAATTCAACTAACCA+AGG | 0.569877 | 1:-72541851 | None:intergenic |
GCACGCATGTGCTGGTGCCA+TGG | 0.574468 | 1:+72539677 | MsaT004675.1:CDS |
ATAAGGAGAGCAAAGAAAGG+TGG | 0.575173 | 1:+72540260 | MsaT004675.1:CDS |
TGTTGTAGTAGCTTGTTGAA+GGG | 0.575894 | 1:-72542139 | None:intergenic |
GGTATAAGGAGAGCAAAGAA+AGG | 0.576664 | 1:+72540257 | MsaT004675.1:CDS |
ATTATTGCTAAAGATATGCA+TGG | 0.591151 | 1:+72540086 | MsaT004675.1:CDS |
ATGTTCAAGATCCAATTCGT+TGG | 0.592882 | 1:+72540651 | MsaT004675.1:CDS |
GAGATTCTACAAGGGATGAG+AGG | 0.595750 | 1:-72539798 | None:intergenic |
TCTGCTGAATAATCCAACCT+AGG | 0.603231 | 1:-72540047 | None:intergenic |
GCATGTTCTGCATGACCTTG+TGG | 0.603875 | 1:-72539738 | None:intergenic |
AGACTAATTCAACTAACCAA+GGG | 0.605653 | 1:-72541850 | None:intergenic |
ATGTGAAATGTGTAAACCCT+TGG | 0.607377 | 1:+72541834 | MsaT004675.1:CDS |
AATCTCTGCTATGAAATACA+TGG | 0.608031 | 1:+72539815 | MsaT004675.1:CDS |
AATGGTGGTAATGATTTGAT+GGG | 0.610306 | 1:+72540398 | MsaT004675.1:CDS |
AAGGGATGAGAGGTGGAACA+CGG | 0.623921 | 1:-72539788 | None:intergenic |
CACCAAACAAAGGTGATACA+CGG | 0.628457 | 1:-72540331 | None:intergenic |
ACCCAATCTGATGCAAACAA+TGG | 0.629763 | 1:+72539981 | MsaT004675.1:CDS |
ATTCTACAAGGGATGAGAGG+TGG | 0.633006 | 1:-72539795 | None:intergenic |
AATGATTTGATGGGAAAAGT+GGG | 0.635170 | 1:+72540407 | MsaT004675.1:CDS |
CACCTCCAAGAAAGAAACCA+AGG | 0.638580 | 1:+72541906 | MsaT004675.1:CDS |
GTTACCTGAAGAAGGCGCCA+AGG | 0.651106 | 1:-72540683 | None:intergenic |
GAGTGGTGGCATTTGAACCA+TGG | 0.651177 | 1:-72539694 | None:intergenic |
TCTGATGCAAACAATGGTGG+TGG | 0.656065 | 1:+72539987 | MsaT004675.1:CDS |
AGGGATGAGAGGTGGAACAC+GGG | 0.668889 | 1:-72539787 | None:intergenic |
AAAGTCTTCTACTTTCCACA+AGG | 0.669890 | 1:+72539723 | MsaT004675.1:CDS |
TCATAGCAGAGATTCTACAA+GGG | 0.672161 | 1:-72539806 | None:intergenic |
CAATCTGATGCAAACAATGG+TGG | 0.688240 | 1:+72539984 | MsaT004675.1:CDS |
ATATCTATAGAGGAACACCA+AGG | 0.796890 | 1:+72540129 | MsaT004675.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 72539615 | 72542591 | 72539615 | ID=MsaG004675 |
Chr1 | mRNA | 72539615 | 72542591 | 72539615 | ID=MsaT004675.1;Parent=MsaG004675 |
Chr1 | exon | 72539615 | 72540700 | 72539615 | ID=MsaT004675.1.exon1;Parent=MsaT004675.1 |
Chr1 | CDS | 72539615 | 72540700 | 72539615 | ID=cds.MsaT004675.1;Parent=MsaT004675.1 |
Chr1 | exon | 72541803 | 72541927 | 72541803 | ID=MsaT004675.1.exon2;Parent=MsaT004675.1 |
Chr1 | CDS | 72541803 | 72541927 | 72541803 | ID=cds.MsaT004675.1;Parent=MsaT004675.1 |
Chr1 | exon | 72542042 | 72542175 | 72542042 | ID=MsaT004675.1.exon3;Parent=MsaT004675.1 |
Chr1 | CDS | 72542042 | 72542175 | 72542042 | ID=cds.MsaT004675.1;Parent=MsaT004675.1 |
Chr1 | exon | 72542446 | 72542591 | 72542446 | ID=MsaT004675.1.exon4;Parent=MsaT004675.1 |
Chr1 | CDS | 72542446 | 72542591 | 72542446 | ID=cds.MsaT004675.1;Parent=MsaT004675.1 |
Gene Sequence |
Protein sequence |