AlfalfaGEDB | MsaG004729

M. sativa ssp. caerulea / MsaG004729

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004729	XP_003591977.1	98.696	230	2	1	1	230	1	229	3.97e-162	457

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004729	sp\|Q9LQR0\|LBD1_ARATH	68.072	166	44	5	69	230	29	189	2.86e-73	223

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004729	tr\|G7I9N1\|G7I9N1_MEDTR	98.696	230	2	1	1	230	1	229	1.90e-162	457

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TFs/TRs:

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Gene ID	Type	Classification
MsaG004729	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004729	MtrunA17_Chr1g0200201	98.696	230	2	1	1	230	1	229	3.65e-166	457
MsaG004729	MtrunA17_Chr4g0030001	67.416	178	45	7	64	230	15	190	4.64e-77	230
MsaG004729	MtrunA17_Chr2g0311601	71.818	110	31	0	71	180	11	120	1.24e-54	172
MsaG004729	MtrunA17_Chr4g0043421	67.890	109	35	0	72	180	14	122	2.54e-51	164
MsaG004729	MtrunA17_Chr3g0114061	71.845	103	29	0	72	174	7	109	1.18e-50	162
MsaG004729	MtrunA17_Chr5g0437571	65.487	113	39	0	72	184	5	117	1.80e-50	162
MsaG004729	MtrunA17_Chr3g0106101	66.055	109	37	0	72	180	6	114	1.02e-49	160
MsaG004729	MtrunA17_Chr2g0326051	63.200	125	38	4	114	230	1	125	1.85e-44	145
MsaG004729	MtrunA17_Chr5g0438091	54.386	114	52	0	71	184	37	150	2.24e-41	139
MsaG004729	MtrunA17_Chr3g0117121	59.048	105	43	0	72	176	9	113	4.64e-41	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004729	AT1G07900.1	68.072	166	44	5	69	230	29	189	2.90e-74	223
MsaG004729	AT2G28500.1	63.187	182	47	4	69	230	51	232	2.96e-71	217
MsaG004729	AT2G30130.1	68.519	108	34	0	72	179	7	114	3.60e-50	162
MsaG004729	AT1G16530.1	65.421	107	36	1	71	176	12	118	2.86e-47	154
MsaG004729	AT1G31320.1	67.273	110	36	0	72	181	12	121	2.26e-43	144
MsaG004729	AT5G63090.4	60.194	103	41	0	72	174	10	112	4.48e-41	139
MsaG004729	AT5G63090.3	60.194	103	41	0	72	174	10	112	4.48e-41	139
MsaG004729	AT5G63090.2	60.194	103	41	0	72	174	10	112	4.48e-41	139
MsaG004729	AT5G63090.1	60.194	103	41	0	72	174	10	112	4.48e-41	139
MsaG004729	AT2G23660.2	58.654	104	43	0	72	175	4	107	6.48e-41	142

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Find 64 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGTGGGAGATTGTAA+AGG	0.533363	1:+73159942	None:intergenic
AACTCATATCAACATGAGGT+TGG	0.513338	1:+73158573	None:intergenic
AACTTGAGTGGATCAGTTGG+AGG	0.595286	1:+73159774	None:intergenic
AAGCAACTCATATCAACATG+AGG	0.663119	1:+73158569	None:intergenic
AATATTGAGAAGCTGGTGAA+GGG	0.602247	1:+73159919	None:intergenic
AATTAATTTCATGTCCAAAG+AGG	0.542951	1:+73158512	None:intergenic
ACCATTGCTCATAGAGTCTT+TGG	0.230237	1:-73159750	MsaT004729.1:CDS
ACTCATATCAACATGAGGTT+GGG	0.426563	1:+73158574	None:intergenic
AGAATCTTGCAGGCAGCACA+AGG	0.497089	1:+73159840	None:intergenic
AGCAGATGCAGTAAGCAGCA+TGG	0.619103	1:-73158813	MsaT004729.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	73158520	73160078	73158520	ID=MsaG004729
Chr1	mRNA	73158520	73160078	73158520	ID=MsaT004729.1;Parent=MsaG004729
Chr1	exon	73158520	73158855	73158520	ID=MsaT004729.1.exon2;Parent=MsaT004729.1
Chr1	CDS	73158520	73158855	73158520	ID=cds.MsaT004729.1;Parent=MsaT004729.1
Chr1	exon	73159722	73160078	73159722	ID=MsaT004729.1.exon1;Parent=MsaT004729.1
Chr1	CDS	73159722	73160078	73159722	ID=cds.MsaT004729.1;Parent=MsaT004729.1

Gene Sequence

>MsaT004729.1

ATGGAACACAAAATGAAAACCACTACTTCTCCTCCTCATCTACCAATCCCAATTCATGTTCCCATTCACACCATGCTATCAAACTCTACTACACCATCTTCATCTTCTTCACCTCCTTTACAATCTCCCACACCTTTCCCTTCACCAGCTTCTCAATATTCTCCTCCCTCGGCCGCTCCTCAACCACCATCTCCTCCACCACCAATTATTGTTAGCCCTTGTGCTGCCTGCAAGATTCTCCGTCGCAGGTGTGTTGAAAAGTGTGTGTTAGCTCCGTATTTTCCTCCAACTGATCCACTCAAGTTCACCATTGCTCATAGAGTCTTTGGAGCTAGCAACATCATTAAGTTCTTGCAGGAACTACCTGAACCTCAGAGAGCAGATGCAGTAAGCAGCATGGTTTATGAAGCAAATGCTAGGATAAGGGACCCAGTTTATGGGTGTGCAGGTGCAATATGTCAACTTCAAAAACAAGTTAGTGAGTTACAAACACAGCTAGCCAAAGCACAAGCTGAGCTAGTGAACATGCATTGCCAACAAGCAAATTTAGTGGCACTAATTTGCATGGAAATGAGTACTCAGTCATCACCAGACCATGACATGATGATTAATCAGCCCCAACCTCATGTTGATATGAGTTGCTTTTTAGAGGACAACAATTTTGGGTCTGCTTGGGAGCCTCTTTGGACATGA

Protein sequence

>MsaT004729.1

MEHKMKTTTSPPHLPIPIHVPIHTMLSNSTTPSSSSSPPLQSPTPFPSPASQYSPPSAAPQPPSPPPPIIVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAELVNMHCQQANLVALICMEMSTQSSPDHDMMINQPQPHVDMSCFLEDNNFGSAWEPLWT*