Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004747 | XP_024641404.1 | 94.036 | 503 | 25 | 2 | 1 | 498 | 1 | 503 | 0.0 | 944 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004747 | sp|Q9C8N5|STOP1_ARATH | 54.951 | 515 | 194 | 8 | 1 | 496 | 1 | 496 | 2.02e-177 | 510 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004747 | tr|A0A396JZF2|A0A396JZF2_MEDTR | 94.036 | 503 | 25 | 2 | 1 | 498 | 1 | 503 | 0.0 | 944 |
Gene ID | Type | Classification |
---|---|---|
MsaG004747 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004747 | MtrunA17_Chr1g0200421 | 94.036 | 503 | 25 | 2 | 1 | 498 | 1 | 503 | 0.0 | 944 |
MsaG004747 | MtrunA17_Chr2g0320341 | 60.870 | 161 | 61 | 1 | 231 | 389 | 229 | 389 | 1.01e-70 | 230 |
MsaG004747 | MtrunA17_Chr8g0382121 | 50.769 | 195 | 92 | 3 | 231 | 424 | 110 | 301 | 2.13e-64 | 211 |
MsaG004747 | MtrunA17_Chr3g0123941 | 59.036 | 166 | 58 | 2 | 231 | 393 | 122 | 280 | 1.08e-63 | 210 |
MsaG004747 | MtrunA17_Chr4g0053341 | 38.967 | 213 | 113 | 10 | 179 | 387 | 25 | 224 | 6.49e-31 | 119 |
MsaG004747 | MtrunA17_Chr8g0352011 | 36.279 | 215 | 104 | 9 | 201 | 397 | 131 | 330 | 7.47e-27 | 111 |
MsaG004747 | MtrunA17_Chr1g0198651 | 41.447 | 152 | 83 | 6 | 239 | 387 | 107 | 255 | 2.44e-26 | 108 |
MsaG004747 | MtrunA17_Chr2g0321291 | 40.764 | 157 | 78 | 8 | 240 | 391 | 140 | 286 | 2.51e-26 | 108 |
MsaG004747 | MtrunA17_Chr5g0422571 | 35.176 | 199 | 114 | 8 | 191 | 387 | 67 | 252 | 8.75e-26 | 107 |
MsaG004747 | MtrunA17_Chr4g0026521 | 35.955 | 178 | 97 | 5 | 240 | 415 | 125 | 287 | 1.56e-25 | 106 |
MsaG004747 | MtrunA17_Chr7g0258011 | 38.667 | 150 | 82 | 5 | 240 | 386 | 183 | 325 | 5.02e-25 | 105 |
MsaG004747 | MtrunA17_Chr2g0328921 | 39.597 | 149 | 80 | 5 | 240 | 385 | 145 | 286 | 5.44e-25 | 105 |
MsaG004747 | MtrunA17_Chr7g0263941 | 35.762 | 151 | 85 | 4 | 231 | 381 | 48 | 186 | 1.86e-24 | 105 |
MsaG004747 | MtrunA17_Chr1g0210821 | 35.762 | 151 | 85 | 4 | 231 | 381 | 58 | 196 | 2.39e-24 | 106 |
MsaG004747 | MtrunA17_Chr4g0029521 | 34.868 | 152 | 86 | 4 | 231 | 381 | 52 | 191 | 2.53e-24 | 105 |
MsaG004747 | MtrunA17_Chr1g0173841 | 38.667 | 150 | 82 | 5 | 240 | 386 | 222 | 364 | 4.31e-24 | 103 |
MsaG004747 | MtrunA17_Chr8g0342421 | 34.731 | 167 | 92 | 5 | 219 | 381 | 61 | 214 | 7.04e-24 | 104 |
MsaG004747 | MtrunA17_Chr1g0162971 | 35.099 | 151 | 86 | 4 | 231 | 381 | 55 | 193 | 9.37e-24 | 103 |
MsaG004747 | MtrunA17_Chr7g0268961 | 30.736 | 231 | 135 | 8 | 231 | 456 | 36 | 246 | 1.13e-23 | 103 |
MsaG004747 | MtrunA17_Chr2g0330171 | 34.503 | 171 | 95 | 5 | 215 | 381 | 41 | 198 | 2.67e-23 | 102 |
MsaG004747 | MtrunA17_Chr1g0181381 | 35.294 | 153 | 84 | 4 | 231 | 381 | 52 | 191 | 3.47e-23 | 102 |
MsaG004747 | MtrunA17_Chr3g0141431 | 35.714 | 154 | 88 | 3 | 231 | 384 | 36 | 178 | 5.32e-23 | 101 |
MsaG004747 | MtrunA17_Chr1g0191991 | 34.641 | 153 | 88 | 3 | 229 | 381 | 75 | 215 | 5.94e-23 | 102 |
MsaG004747 | MtrunA17_Chr2g0326381 | 35.099 | 151 | 87 | 4 | 231 | 381 | 46 | 185 | 6.50e-23 | 100 |
MsaG004747 | MtrunA17_Chr1g0185121 | 35.526 | 152 | 85 | 4 | 231 | 381 | 54 | 193 | 6.60e-23 | 101 |
MsaG004747 | MtrunA17_Chr1g0199101 | 33.775 | 151 | 88 | 4 | 231 | 381 | 61 | 199 | 6.96e-23 | 102 |
MsaG004747 | MtrunA17_Chr1g0163001 | 34.437 | 151 | 87 | 4 | 231 | 381 | 57 | 195 | 7.16e-23 | 101 |
MsaG004747 | MtrunA17_Chr4g0040571 | 33.775 | 151 | 88 | 3 | 231 | 381 | 53 | 191 | 7.29e-23 | 101 |
MsaG004747 | MtrunA17_Chr8g0373541 | 34.437 | 151 | 87 | 3 | 231 | 381 | 47 | 185 | 9.15e-23 | 101 |
MsaG004747 | MtrunA17_Chr1g0151351 | 35.099 | 151 | 87 | 3 | 231 | 381 | 55 | 194 | 2.95e-22 | 99.4 |
MsaG004747 | MtrunA17_Chr2g0324991 | 32.237 | 152 | 91 | 3 | 231 | 382 | 6 | 145 | 6.64e-18 | 80.9 |
MsaG004747 | MtrunA17_Chr6g0479921 | 35.333 | 150 | 82 | 7 | 231 | 378 | 43 | 179 | 1.92e-17 | 84.7 |
MsaG004747 | MtrunA17_Chr8g0375521 | 32.215 | 149 | 89 | 5 | 231 | 378 | 41 | 178 | 8.73e-17 | 82.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004747 | AT1G34370.2 | 54.951 | 515 | 194 | 8 | 1 | 496 | 1 | 496 | 2.06e-178 | 510 |
MsaG004747 | AT1G34370.1 | 54.951 | 515 | 194 | 8 | 1 | 496 | 1 | 496 | 2.06e-178 | 510 |
MsaG004747 | AT1G34370.3 | 70.588 | 289 | 75 | 4 | 214 | 496 | 2 | 286 | 4.12e-141 | 407 |
MsaG004747 | AT5G22890.1 | 39.828 | 349 | 180 | 9 | 64 | 401 | 39 | 368 | 3.43e-75 | 241 |
MsaG004747 | AT1G51220.1 | 37.423 | 163 | 92 | 5 | 228 | 387 | 160 | 315 | 9.77e-26 | 108 |
MsaG004747 | AT1G34790.1 | 40.645 | 155 | 79 | 7 | 238 | 387 | 136 | 282 | 2.03e-25 | 106 |
MsaG004747 | AT1G13290.1 | 38.764 | 178 | 96 | 8 | 220 | 392 | 76 | 245 | 2.33e-25 | 106 |
MsaG004747 | AT3G20880.1 | 39.073 | 151 | 82 | 5 | 240 | 387 | 250 | 393 | 1.03e-24 | 106 |
MsaG004747 | AT1G08290.1 | 33.333 | 201 | 122 | 6 | 193 | 387 | 124 | 318 | 1.53e-24 | 104 |
MsaG004747 | AT3G45260.2 | 33.918 | 171 | 98 | 4 | 231 | 401 | 53 | 208 | 3.31e-24 | 105 |
MsaG004747 | AT3G45260.1 | 33.918 | 171 | 98 | 4 | 231 | 401 | 53 | 208 | 3.31e-24 | 105 |
MsaG004747 | AT5G44160.1 | 34.437 | 151 | 87 | 3 | 231 | 381 | 51 | 189 | 3.91e-24 | 105 |
MsaG004747 | AT5G66730.1 | 34.437 | 151 | 87 | 3 | 231 | 381 | 46 | 184 | 5.61e-24 | 105 |
MsaG004747 | AT5G44160.2 | 34.437 | 151 | 87 | 3 | 231 | 381 | 12 | 150 | 6.14e-24 | 104 |
MsaG004747 | AT3G57670.1 | 36.364 | 176 | 96 | 6 | 215 | 382 | 181 | 348 | 6.84e-24 | 103 |
MsaG004747 | AT5G60470.2 | 35.135 | 148 | 85 | 3 | 231 | 378 | 58 | 194 | 1.52e-23 | 103 |
MsaG004747 | AT5G60470.3 | 35.135 | 148 | 85 | 3 | 231 | 378 | 54 | 190 | 1.63e-23 | 103 |
MsaG004747 | AT1G03840.1 | 34.437 | 151 | 87 | 3 | 231 | 381 | 55 | 193 | 1.68e-23 | 103 |
MsaG004747 | AT1G03840.2 | 34.437 | 151 | 87 | 3 | 231 | 381 | 53 | 191 | 1.82e-23 | 103 |
MsaG004747 | AT5G60470.1 | 35.135 | 148 | 85 | 3 | 231 | 378 | 49 | 185 | 1.92e-23 | 103 |
MsaG004747 | AT5G03150.1 | 35.294 | 153 | 84 | 4 | 231 | 381 | 67 | 206 | 2.17e-23 | 103 |
MsaG004747 | AT1G14580.1 | 33.775 | 151 | 88 | 3 | 231 | 381 | 67 | 205 | 4.01e-23 | 102 |
MsaG004747 | AT1G14580.2 | 33.775 | 151 | 88 | 3 | 231 | 381 | 67 | 205 | 4.01e-23 | 102 |
MsaG004747 | AT1G14580.3 | 33.775 | 151 | 88 | 3 | 231 | 381 | 81 | 219 | 4.67e-23 | 102 |
MsaG004747 | AT1G55110.3 | 33.775 | 151 | 89 | 3 | 231 | 381 | 77 | 216 | 8.35e-23 | 101 |
MsaG004747 | AT1G55110.1 | 33.775 | 151 | 89 | 3 | 231 | 381 | 77 | 216 | 8.35e-23 | 101 |
MsaG004747 | AT1G55110.2 | 33.775 | 151 | 89 | 3 | 231 | 381 | 77 | 216 | 8.35e-23 | 101 |
MsaG004747 | AT2G02080.1 | 33.775 | 151 | 88 | 3 | 231 | 381 | 68 | 206 | 9.29e-23 | 101 |
MsaG004747 | AT2G02080.4 | 33.775 | 151 | 88 | 3 | 231 | 381 | 68 | 206 | 9.29e-23 | 101 |
MsaG004747 | AT2G02080.5 | 33.775 | 151 | 88 | 3 | 231 | 381 | 68 | 206 | 9.29e-23 | 101 |
MsaG004747 | AT2G02080.3 | 33.775 | 151 | 88 | 3 | 231 | 381 | 68 | 206 | 9.29e-23 | 101 |
MsaG004747 | AT3G50700.1 | 35.762 | 151 | 85 | 3 | 231 | 381 | 48 | 186 | 9.64e-23 | 101 |
MsaG004747 | AT2G02070.2 | 33.775 | 151 | 88 | 3 | 231 | 381 | 66 | 204 | 1.41e-22 | 101 |
MsaG004747 | AT2G02070.1 | 33.775 | 151 | 88 | 3 | 231 | 381 | 66 | 204 | 1.41e-22 | 101 |
MsaG004747 | AT3G13810.4 | 34.437 | 151 | 88 | 3 | 231 | 381 | 84 | 223 | 1.77e-22 | 100 |
MsaG004747 | AT3G13810.1 | 34.437 | 151 | 88 | 3 | 231 | 381 | 84 | 223 | 1.77e-22 | 100 |
MsaG004747 | AT3G13810.3 | 35.220 | 159 | 91 | 4 | 223 | 381 | 64 | 210 | 1.79e-22 | 100 |
MsaG004747 | AT3G13810.5 | 34.437 | 151 | 88 | 3 | 231 | 381 | 79 | 218 | 1.82e-22 | 100 |
MsaG004747 | AT3G13810.2 | 35.220 | 159 | 91 | 4 | 223 | 381 | 78 | 224 | 1.82e-22 | 100 |
MsaG004747 | AT3G13810.6 | 34.437 | 151 | 88 | 3 | 231 | 381 | 65 | 204 | 1.93e-22 | 100 |
MsaG004747 | AT4G02670.2 | 35.099 | 151 | 87 | 3 | 231 | 381 | 69 | 208 | 2.07e-21 | 96.7 |
MsaG004747 | AT4G02670.1 | 35.099 | 151 | 87 | 3 | 231 | 381 | 67 | 206 | 2.23e-21 | 96.7 |
MsaG004747 | AT2G02080.6 | 34.752 | 141 | 80 | 3 | 241 | 381 | 1 | 129 | 1.33e-20 | 94.7 |
MsaG004747 | AT2G02080.2 | 34.752 | 141 | 80 | 3 | 241 | 381 | 1 | 129 | 1.33e-20 | 94.7 |
MsaG004747 | AT1G25250.1 | 33.333 | 159 | 95 | 5 | 221 | 378 | 14 | 162 | 9.50e-18 | 85.1 |
MsaG004747 | AT1G68130.1 | 34.899 | 149 | 85 | 6 | 231 | 378 | 55 | 192 | 3.20e-17 | 84.3 |
MsaG004747 | AT1G25250.3 | 34.228 | 149 | 87 | 5 | 231 | 378 | 47 | 185 | 4.40e-17 | 83.6 |
MsaG004747 | AT2G01940.1 | 32.886 | 149 | 88 | 5 | 231 | 378 | 58 | 195 | 7.77e-17 | 83.2 |
MsaG004747 | AT2G01940.3 | 32.847 | 137 | 80 | 5 | 231 | 366 | 58 | 183 | 3.43e-14 | 75.1 |
Find 109 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATTCCCACCCTGTAAAA+AGG | 0.182953 | 1:+73363077 | None:intergenic |
TCAAATCCTTCAAGTGAAAA+TGG | 0.239095 | 1:-73361916 | MsaT004747.1:CDS |
CATGATTCACCACCAGATTT+AGG | 0.245532 | 1:+73361721 | None:intergenic |
TTTAATTATGCTCCTAAATC+TGG | 0.266493 | 1:-73361733 | MsaT004747.1:CDS |
TGCACCATTTCACAATTATT+AGG | 0.289796 | 1:+73362591 | None:intergenic |
AACTTTGAAGGCTGTAACTT+TGG | 0.308561 | 1:-73361829 | MsaT004747.1:CDS |
AACACTGTGGCAAGGATAAA+TGG | 0.316031 | 1:-73362119 | MsaT004747.1:CDS |
GCAAAACCACACAAAGAAAC+TGG | 0.316849 | 1:-73362345 | MsaT004747.1:CDS |
TCGAACTCAGTCTGTGATTC+CGG | 0.317053 | 1:-73363024 | MsaT004747.1:CDS |
GGAAGCATGAACTTCTGTTT+TGG | 0.324815 | 1:-73361940 | MsaT004747.1:CDS |
AACGGGATTAGCCTTCCTTT+TGG | 0.342253 | 1:-73362693 | MsaT004747.1:CDS |
TTCTCACCTTTGAACTTTGA+AGG | 0.355262 | 1:-73361841 | MsaT004747.1:CDS |
GGAGTCTTCTCCCTTCTGTT+AGG | 0.361673 | 1:-73362764 | MsaT004747.1:CDS |
CTGGGCTAGGTCCTCTTCCT+TGG | 0.390105 | 1:-73363147 | MsaT004747.1:CDS |
GAAGCTTGTGTGCTAACAAC+TGG | 0.402631 | 1:-73363166 | MsaT004747.1:CDS |
AAATGGATCTGATAGCATTA+TGG | 0.409807 | 1:-73361899 | MsaT004747.1:CDS |
GACAGCTTAGCCAACTTAAC+GGG | 0.414271 | 1:-73362710 | MsaT004747.1:CDS |
TTTCGATCAGTCCATTCATA+AGG | 0.416970 | 1:-73362619 | MsaT004747.1:CDS |
GAATAGCCGGTGTATGGCCT+TGG | 0.434473 | 1:+73362034 | None:intergenic |
CCGGTGTATGGCCTTGGAAA+AGG | 0.435593 | 1:+73362040 | None:intergenic |
AGTTCACGCGGTTGTTCAAA+AGG | 0.437372 | 1:+73362858 | None:intergenic |
AAGATTGAAATGAATCCAAC+TGG | 0.438158 | 1:-73363188 | None:intergenic |
ACATAAAGACGAAGAAGATA+TGG | 0.453200 | 1:-73362544 | MsaT004747.1:CDS |
GTGGCTCGGCAGATCCTTTG+TGG | 0.455339 | 1:+73362001 | None:intergenic |
ATTAGGTACATCCTTATGAA+TGG | 0.455946 | 1:+73362608 | None:intergenic |
CGGTGTATGGCCTTGGAAAA+GGG | 0.459444 | 1:+73362041 | None:intergenic |
GAATCTTCAAATGGAGGTTG+AGG | 0.464007 | 1:+73361790 | None:intergenic |
CAATCAAATGCACAAGATCC+TGG | 0.464133 | 1:+73362898 | None:intergenic |
GAGCCTTCTGAATCTTCAAA+TGG | 0.464855 | 1:+73361781 | None:intergenic |
TGATATTAAGATCACTGATC+AGG | 0.471924 | 1:-73363000 | MsaT004747.1:CDS |
GTTACGCTTGCAGCCACCAT+AGG | 0.472872 | 1:+73362287 | None:intergenic |
CCATACACCGGCTATTCCTT+CGG | 0.472983 | 1:-73362028 | MsaT004747.1:CDS |
AAACGAGTAAACTTCAAGAC+TGG | 0.479681 | 1:-73362977 | MsaT004747.1:CDS |
GGACAGCTTAGCCAACTTAA+CGG | 0.484196 | 1:-73362711 | MsaT004747.1:CDS |
CGATGTGACACCAGAGAAAA+CGG | 0.484392 | 1:-73361973 | MsaT004747.1:CDS |
GAATACCTCTTGATAAGCTT+CGG | 0.485383 | 1:+73362315 | None:intergenic |
AAAGGTGAGAAATAATTGAT+AGG | 0.486126 | 1:+73361853 | None:intergenic |
CCGAAGGAATAGCCGGTGTA+TGG | 0.486962 | 1:+73362028 | None:intergenic |
TTGAAGGCTGTAACTTTGGT+GGG | 0.487577 | 1:-73361825 | MsaT004747.1:CDS |
TTCTGTACAATCTGTGGCAA+GGG | 0.495568 | 1:-73362441 | MsaT004747.1:CDS |
GTTCAGTTGATCTCTACTGC+AGG | 0.497725 | 1:-73362786 | MsaT004747.1:CDS |
CTCCCTTCTGTTAGGAACTC+CGG | 0.500730 | 1:-73362756 | MsaT004747.1:CDS |
TTTGAAGGCTGTAACTTTGG+TGG | 0.506070 | 1:-73361826 | MsaT004747.1:CDS |
CAACTTGTGCCTGTTCCAAA+AGG | 0.509708 | 1:+73362678 | None:intergenic |
TCTCTGGTGTCACATCGATC+AGG | 0.512441 | 1:+73361979 | None:intergenic |
CCTCTTGATAAGCTTCGGTT+CGG | 0.514238 | 1:+73362320 | None:intergenic |
GAAGGCTAATCCCGTTAAGT+TGG | 0.516535 | 1:+73362700 | None:intergenic |
ACAAACACAAGTCCGTTGCT+TGG | 0.519115 | 1:-73362732 | MsaT004747.1:CDS |
GACGAAGAAGATATGGAAGA+GGG | 0.519377 | 1:-73362537 | MsaT004747.1:CDS |
TGTACCTAATAATTGTGAAA+TGG | 0.520470 | 1:-73362595 | MsaT004747.1:CDS |
AGACGAAGAAGATATGGAAG+AGG | 0.521674 | 1:-73362538 | MsaT004747.1:CDS |
CGAATGCACATGCGAGGCCA+TGG | 0.526902 | 1:-73362396 | MsaT004747.1:CDS |
AATCTTCAAATGGAGGTTGA+GGG | 0.529470 | 1:+73361791 | None:intergenic |
AAGAGGTATTCGTGTCCCTA+TGG | 0.530145 | 1:-73362303 | MsaT004747.1:CDS |
GGTTGGTTGATTTCTTTGAA+AGG | 0.533908 | 1:+73363050 | None:intergenic |
TTTGGAACAGGCACAAGTTG+TGG | 0.534584 | 1:-73362675 | MsaT004747.1:CDS |
TGTGTGCTAACAACTGGGCT+AGG | 0.534923 | 1:-73363160 | MsaT004747.1:CDS |
GAGGGTGAGAATCTTGCTCC+TGG | 0.536278 | 1:-73362519 | MsaT004747.1:CDS |
AGAAAAGATTCATCAGCTCC+AGG | 0.538362 | 1:-73362916 | MsaT004747.1:CDS |
GTCACATCGATCAGGTGGCT+CGG | 0.538841 | 1:+73361987 | None:intergenic |
TCGGACCCAGTTTCTTTGTG+TGG | 0.543092 | 1:+73362339 | None:intergenic |
TCAGTGATCTTAATATCATC+CGG | 0.547189 | 1:+73363005 | None:intergenic |
CAACGGACTTGTGTTTGTAC+CGG | 0.548811 | 1:+73362737 | None:intergenic |
TGGTCTTCCGAAGGAATAGC+CGG | 0.552762 | 1:+73362021 | None:intergenic |
GTTTGTAACCCATTCCCAGT+GGG | 0.558849 | 1:+73363122 | None:intergenic |
TTACGCTTGCAGCCACCATA+GGG | 0.561037 | 1:+73362288 | None:intergenic |
CAGACTGAGTTCGAGATGGT+TGG | 0.568725 | 1:+73363033 | None:intergenic |
TTACAGCCTTCAAAGTTCAA+AGG | 0.572217 | 1:+73361835 | None:intergenic |
GTACCGGAGTTCCTAACAGA+AGG | 0.573753 | 1:+73362753 | None:intergenic |
GATAAATGGCTTTGTTCATG+TGG | 0.574687 | 1:-73362105 | MsaT004747.1:CDS |
TTTCTGTACAATCTGTGGCA+AGG | 0.576014 | 1:-73362442 | MsaT004747.1:CDS |
GATCCTTTGTGGTCTTCCGA+AGG | 0.576114 | 1:+73362012 | None:intergenic |
AACGAGTAAACTTCAAGACT+GGG | 0.577049 | 1:-73362976 | MsaT004747.1:CDS |
TTCAGTTGATCTCTACTGCA+GGG | 0.580172 | 1:-73362785 | MsaT004747.1:CDS |
TTGTGCCTGTTCCAAAAGGA+AGG | 0.586342 | 1:+73362682 | None:intergenic |
CCTTCTGAATCTTCAAATGG+AGG | 0.588246 | 1:+73361784 | None:intergenic |
CAAAACCACACAAAGAAACT+GGG | 0.588364 | 1:-73362344 | MsaT004747.1:CDS |
TGGTGGCTGCAAGCGTAACA+AGG | 0.588657 | 1:-73362283 | MsaT004747.1:CDS |
AATTATGCTCCTAAATCTGG+TGG | 0.589400 | 1:-73361730 | MsaT004747.1:CDS |
TTAGCACACAAGCTTCCAGT+TGG | 0.591117 | 1:+73363173 | None:intergenic |
AGAGAAAACGGTGCTGTGGT+AGG | 0.594886 | 1:-73361961 | MsaT004747.1:CDS |
AAGCTTATTCAACATAACAC+TGG | 0.596534 | 1:+73362950 | None:intergenic |
GATAGCATTATGGATGTGAA+AGG | 0.598382 | 1:-73361889 | MsaT004747.1:CDS |
ACACATAAAATAGTCTTCAG+AGG | 0.602166 | 1:+73362243 | None:intergenic |
TTGTAACCCATTCCCAGTGG+GGG | 0.606052 | 1:+73363124 | None:intergenic |
CCTCCATTTGAAGATTCAGA+AGG | 0.608580 | 1:-73361784 | MsaT004747.1:CDS |
AGGTATTCGTGTCCCTATGG+TGG | 0.612960 | 1:-73362300 | MsaT004747.1:CDS |
TGGCTAAGCTGTCCAAGCAA+CGG | 0.613429 | 1:+73362720 | None:intergenic |
TGTAAAATCTCATATGAACC+AGG | 0.616349 | 1:+73362501 | None:intergenic |
CACCAGAGAAAACGGTGCTG+TGG | 0.617127 | 1:-73361965 | MsaT004747.1:CDS |
CTGGTGTCACATCGATCAGG+TGG | 0.620999 | 1:+73361982 | None:intergenic |
TACCGGAGTTCCTAACAGAA+GGG | 0.630611 | 1:+73362754 | None:intergenic |
ACACATTTCTGTACAATCTG+TGG | 0.631898 | 1:-73362447 | MsaT004747.1:CDS |
TTTGTAACCCATTCCCAGTG+GGG | 0.637498 | 1:+73363123 | None:intergenic |
ATCACAGACTGAGTTCGAGA+TGG | 0.643055 | 1:+73363029 | None:intergenic |
AAGCTTGTGTGCTAACAACT+GGG | 0.643592 | 1:-73363165 | MsaT004747.1:CDS |
CGTTTGTAACCCATTCCCAG+TGG | 0.646958 | 1:+73363121 | None:intergenic |
AATCTTCGAATGCACATGCG+AGG | 0.648293 | 1:-73362402 | MsaT004747.1:CDS |
TCATGAGAAACACTGTGGCA+AGG | 0.649401 | 1:-73362127 | MsaT004747.1:CDS |
TGACTGAAAACTTCTTCGTG+TGG | 0.651786 | 1:+73362166 | None:intergenic |
CTGTGGCAAGGGTTTCAAGA+GGG | 0.652480 | 1:-73362430 | MsaT004747.1:CDS |
AGAAATGTGTGTGAGGTGCA+AGG | 0.661202 | 1:+73362460 | None:intergenic |
CCGAACCGAAGCTTATCAAG+AGG | 0.666381 | 1:-73362320 | MsaT004747.1:CDS |
TCTGTGGCAAGGGTTTCAAG+AGG | 0.676093 | 1:-73362431 | MsaT004747.1:CDS |
TCTTGAGTCACAAGTTCACG+CGG | 0.701065 | 1:+73362846 | None:intergenic |
AATGGTGCAAAACAATACTG+TGG | 0.704627 | 1:-73362577 | MsaT004747.1:CDS |
ATTCCTTCGGAAGACCACAA+AGG | 0.713111 | 1:-73362015 | MsaT004747.1:CDS |
ATTGTACAGAAATGTGTGTG+AGG | 0.743882 | 1:+73362453 | None:intergenic |
AAAACTCATGAGAAACACTG+TGG | 0.781827 | 1:-73362132 | MsaT004747.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 73361705 | 73363201 | 73361705 | ID=MsaG004747 |
Chr1 | mRNA | 73361705 | 73363201 | 73361705 | ID=MsaT004747.1;Parent=MsaG004747 |
Chr1 | exon | 73361705 | 73363201 | 73361705 | ID=MsaT004747.1.exon1;Parent=MsaT004747.1 |
Chr1 | CDS | 73361705 | 73363201 | 73361705 | ID=cds.MsaT004747.1;Parent=MsaT004747.1 |
Gene Sequence |
Protein sequence |