AlfalfaGEDB | MsaG004755

M. sativa ssp. caerulea / MsaG004755

KEGG: -
GO: -
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004755	KEH43553.1	96.226	212	8	0	1	212	1	212	2.17e-148	421

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004755	tr\|A0A072VQ60\|A0A072VQ60_MEDTR	96.226	212	8	0	1	212	1	212	1.04e-148	421

TFs/TRs:

Gene ID	Type	Classification
MsaG004755	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002328	MsaG004755	0.800020	2.928091e-48	3.960860e-46
MsaG004755	MsaG004958	0.929447	1.864184e-92	7.243952e-88
MsaG004755	MsaG005680	0.813298	4.732129e-51	8.764563e-49
MsaG004755	MsaG009081	0.857693	2.674429e-62	1.906508e-59
MsaG004755	MsaG017505	0.803146	6.740128e-49	9.788837e-47
MsaG004755	MsaG018834	0.806650	1.258242e-49	1.982918e-47
MsaG004755	MsaG019925	0.853019	6.052891e-61	3.644442e-58
MsaG004755	MsaG038782	0.824083	1.730960e-53	4.246629e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004755	MtrunA17_Chr1g0200511	96.226	212	8	0	1	212	17	228	5.52e-152	421

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004755	AT4G09620.2	57.746	213	86	2	1	212	1	210	1.39e-81	242
MsaG004755	AT4G09620.1	57.746	213	86	2	1	212	3	212	1.48e-81	242
MsaG004755	AT4G09620.3	57.746	213	86	2	1	212	3	212	1.48e-81	242

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCCTTGTTCATTCTCCTTAC+TGG	0.079985	1:+73469756	MsaT004755.1:CDS
TCCATTTACTGCCTCAAATT+TGG	0.102598	1:-73469804	None:intergenic
CCTTCGAAATCCAAAAGTTT+TGG	0.174584	1:+73469994	MsaT004755.1:CDS
CCCAAATTTGAGGCAGTAAA+TGG	0.185063	1:+73469803	MsaT004755.1:CDS
AAATTACATCCAAGAACTTC+TGG	0.252185	1:-73469893	None:intergenic
ATATTAAAACCCAAAACTTT+TGG	0.261186	1:-73470004	None:intergenic
CCATTTACTGCCTCAAATTT+GGG	0.285378	1:-73469803	None:intergenic
CCTTGTTCATTCTCCTTACT+GGG	0.302250	1:+73469757	MsaT004755.1:CDS
GATATTTGGCGATGGAATAA+TGG	0.339231	1:-73469534	None:intergenic
CAATACTCCACTGCTCCTTC+AGG	0.365711	1:-73469946	None:intergenic
AAGATACTTGGAAAAGCATT+TGG	0.395197	1:+73469734	MsaT004755.1:CDS
ATGGAACATTAGATTATCTA+AGG	0.403508	1:+73469822	MsaT004755.1:CDS
ATCGTGCAGGCTGATCTTGC+TGG	0.416752	1:+73469503	MsaT004755.1:intron
TTGCTAATGCAGGTATGGTT+GGG	0.428276	1:+73467246	None:intergenic
TGATTGTAAGGGAGATTGTA+AGG	0.441638	1:+73470027	MsaT004755.1:CDS
GTATTGAAGGAAAATCTCTT+AGG	0.453881	1:+73469963	MsaT004755.1:CDS
AGGCACAATGCACTAGATGC+TGG	0.458361	1:+73470047	MsaT004755.1:CDS
TTTGCTAATGCAGGTATGGT+TGG	0.468584	1:+73467245	None:intergenic
TAACTTCGACGATGAAGAAA+AGG	0.469350	1:+73469709	MsaT004755.1:CDS
AAGGAGCAGTGGAGTATTGA+AGG	0.472993	1:+73469950	MsaT004755.1:CDS
GAAGAAAAGGACAAGATACT+TGG	0.482017	1:+73469722	MsaT004755.1:CDS
TGGCGATGGAATAATGGAAA+AGG	0.502232	1:-73469528	None:intergenic
GTGATGAAGATCGGAGTATG+TGG	0.505034	1:+73469657	MsaT004755.1:CDS
TCACGATCTTCTCCCCAGTA+AGG	0.522126	1:-73469770	None:intergenic
CAAATCATTCTACCAACCAT+TGG	0.536249	1:+73469594	MsaT004755.1:CDS
GGCACAATGCACTAGATGCT+GGG	0.562129	1:+73470048	MsaT004755.1:CDS
GAAGGAAGTTCCCAAATTTG+AGG	0.566069	1:+73469793	MsaT004755.1:CDS
AGCACAGTTCTTGTGTTGCA+AGG	0.570294	1:+73467307	MsaT004755.1:CDS
TAATCTCAAGTGATGAAGAT+CGG	0.572690	1:+73469648	MsaT004755.1:CDS
GCAGAATCAGTAGCGAGAAG+AGG	0.578077	1:-73467284	None:intergenic
CCCAGTAAGGAGAATGAACA+AGG	0.586733	1:-73469757	None:intergenic
CTTGTTCATTCTCCTTACTG+GGG	0.596220	1:+73469758	MsaT004755.1:CDS
TAAAGATCCTGAAGGAGCAG+TGG	0.596954	1:+73469939	MsaT004755.1:CDS
ATGGTTGGTAGAATGATTTG+AGG	0.603312	1:-73469591	None:intergenic
AGAACGCAATATCCAATGGT+TGG	0.612381	1:-73469606	None:intergenic
TCGTAGAACGCAATATCCAA+TGG	0.625607	1:-73469610	None:intergenic
AGCTAATATAAAGATCCTGA+AGG	0.630758	1:+73469931	MsaT004755.1:CDS
CTGGGGAGAAGATCGTGAGA+AGG	0.634124	1:+73469775	MsaT004755.1:CDS
CAAGTCTTGCAAAAGCAAAG+TGG	0.634464	1:+73469567	MsaT004755.1:CDS
TGATGAAGATCGGAGTATGT+GGG	0.637812	1:+73469658	MsaT004755.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	73467260	73470081	73467260	ID=MsaG004755
Chr1	mRNA	73467260	73470081	73467260	ID=MsaT004755.1;Parent=MsaG004755
Chr1	exon	73467260	73467328	73467260	ID=MsaT004755.1.exon1;Parent=MsaT004755.1
Chr1	CDS	73467260	73467328	73467260	ID=cds.MsaT004755.1;Parent=MsaT004755.1
Chr1	exon	73469512	73470081	73469512	ID=MsaT004755.1.exon2;Parent=MsaT004755.1
Chr1	CDS	73469512	73470081	73469512	ID=cds.MsaT004755.1;Parent=MsaT004755.1

Gene Sequence

>MsaT004755.1

ATGGTTGGGAAACAGTTGAATTCTCCTCTTCTCGCTACTGATTCTGCAGCACAGTTCTTGTGTTGCAAGGCTGATCTTGCTGGTGCCTTTTCCATTATTCCATCGCCAAATATCAGATTTTTGCCAAGTCTTGCAAAAGCAAAGTGGACCTCAAATCATTCTACCAACCATTGGATATTGCGTTCTACGACACAGATAGAGAATGTAATCTCAAGTGATGAAGATCGGAGTATGTGGGAAGCATGTAGACAAGCTCTTTCTGCATTTAACTTCGACGATGAAGAAAAGGACAAGATACTTGGAAAAGCATTTGGCCTTGTTCATTCTCCTTACTGGGGAGAAGATCGTGAGAAGGAAGTTCCCAAATTTGAGGCAGTAAATGGAACATTAGATTATCTAAGGAGTTTAAATCTTTCTGACGATGATTTGTCCAAGTTGCTTAAAAAATTTCCAGAAGTTCTTGGATGTAATTTAGAAGAAGAGTTGAAAGCTAATATAAAGATCCTGAAGGAGCAGTGGAGTATTGAAGGAAAATCTCTTAGGAACCTTCTCCTTCGAAATCCAAAAGTTTTGGGTTTTAATATTGATTGTAAGGGAGATTGTAAGGCACAATGCACTAGATGCTGGGTTCGATTCTAG

Protein sequence

>MsaT004755.1

MVGKQLNSPLLATDSAAQFLCCKADLAGAFSIIPSPNIRFLPSLAKAKWTSNHSTNHWILRSTTQIENVISSDEDRSMWEACRQALSAFNFDDEEKDKILGKAFGLVHSPYWGEDREKEVPKFEAVNGTLDYLRSLNLSDDDLSKLLKKFPEVLGCNLEEELKANIKILKEQWSIEGKSLRNLLLRNPKVLGFNIDCKGDCKAQCTRCWVRF*