AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG004759


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004759 MtrunA17_Chr1g0200601 72.036 447 36 7 12 400 84 499 0.0 600
MsaG004759 MtrunA17_Chr8g0385341 55.204 442 105 10 12 395 84 490 1.69e-155 448
MsaG004759 MtrunA17_Chr3g0131181 54.072 442 110 10 12 395 83 489 6.04e-149 432
MsaG004759 MtrunA17_Chr1g0170281 53.302 424 109 7 12 377 172 564 8.46e-140 410
MsaG004759 MtrunA17_Chr5g0448721 48.519 439 135 9 12 392 150 555 4.51e-131 387
MsaG004759 MtrunA17_Chr1g0176751 49.771 436 128 8 12 389 178 580 8.59e-131 388
MsaG004759 MtrunA17_Chr1g0176421 49.552 446 112 7 12 371 215 633 5.41e-129 385
MsaG004759 MtrunA17_Chr7g0267751 46.759 432 147 7 12 389 189 591 1.74e-122 367
MsaG004759 MtrunA17_Chr8g0387671 45.863 423 147 7 12 379 120 515 6.02e-114 342
MsaG004759 MtrunA17_Chr0c02g0489761 44.681 423 152 7 12 379 132 527 3.33e-113 341
MsaG004759 MtrunA17_Chr5g0441691 45.199 427 144 8 12 379 122 517 4.51e-112 338
MsaG004759 MtrunA17_Chr3g0098951 45.305 426 143 9 12 375 138 535 2.31e-110 334
MsaG004759 MtrunA17_Chr1g0157131 43.765 425 155 8 12 379 128 525 4.82e-110 333
MsaG004759 MtrunA17_Chr5g0397101 44.941 425 151 9 12 381 121 517 1.89e-109 331
MsaG004759 MtrunA17_Chr4g0074811 45.652 414 143 9 12 370 145 531 7.78e-109 330
MsaG004759 MtrunA17_Chr4g0059951 44.521 438 151 10 13 387 128 536 1.63e-107 327
MsaG004759 MtrunA17_Chr5g0444171 43.839 422 147 8 12 374 146 536 5.44e-107 325
MsaG004759 MtrunA17_Chr7g0242561 40.000 435 170 8 12 386 110 513 7.74e-96 296
MsaG004759 MtrunA17_Chr7g0257751 39.713 418 167 8 12 372 112 501 9.07e-92 286
MsaG004759 MtrunA17_Chr1g0173541 38.242 421 169 8 12 372 106 495 6.75e-89 278
MsaG004759 MtrunA17_Chr4g0074791 39.372 414 159 9 12 370 149 525 4.94e-85 268
MsaG004759 MtrunA17_Chr4g0033371 37.442 430 187 7 12 386 126 528 1.58e-84 267
MsaG004759 MtrunA17_Chr7g0267771 48.971 243 79 3 12 224 142 369 8.32e-71 230
MsaG004759 MtrunA17_Chr5g0405421 34.719 409 193 8 13 368 154 541 4.47e-68 225
MsaG004759 MtrunA17_Chr8g0374701 33.824 408 194 12 13 367 186 570 1.77e-62 211
MsaG004759 MtrunA17_Chr5g0402551 34.146 410 190 13 13 367 192 576 8.73e-62 209
MsaG004759 MtrunA17_Chr4g0045261 32.767 412 193 10 13 367 195 579 1.88e-60 205
MsaG004759 MtrunA17_Chr1g0203881 46.377 207 81 1 13 189 96 302 9.38e-56 191
MsaG004759 MtrunA17_Chr7g0256001 31.296 409 204 11 13 367 199 584 8.91e-55 190
MsaG004759 MtrunA17_Chr7g0276111 31.218 394 202 10 13 358 202 574 1.88e-54 189
MsaG004759 MtrunA17_Chr3g0127571 33.239 355 195 5 13 331 196 544 2.18e-54 189
MsaG004759 MtrunA17_Chr5g0444191 48.344 151 60 1 69 219 49 181 1.36e-41 145
MsaG004759 MtrunA17_Chr1g0190131 37.745 204 94 4 13 186 64 264 5.19e-38 138
MsaG004759 MtrunA17_Chr8g0355131 28.738 428 216 13 12 369 101 509 6.58e-37 140
MsaG004759 MtrunA17_Chr3g0132591 35.294 221 95 4 12 202 159 361 2.02e-33 130
MsaG004759 MtrunA17_Chr7g0274941 31.780 236 108 8 12 212 70 287 1.33e-25 105
MsaG004759 MtrunA17_Chr4g0063881 31.532 222 103 7 13 192 65 279 7.86e-25 105
MsaG004759 MtrunA17_Chr2g0304111 34.000 200 86 8 6 168 70 260 8.32e-25 105
MsaG004759 MtrunA17_Chr8g0351491 32.075 212 103 6 15 192 72 276 8.54e-25 102
MsaG004759 MtrunA17_Chr3g0140631 32.093 215 99 7 16 193 94 298 1.67e-24 102
MsaG004759 MtrunA17_Chr8g0353621 33.019 212 101 6 15 192 66 270 2.24e-24 101
MsaG004759 MtrunA17_Chr3g0125381 31.776 214 106 6 15 193 8 216 7.38e-24 98.6
MsaG004759 MtrunA17_Chr3g0129721 35.256 156 70 2 16 140 81 236 3.09e-23 98.6
MsaG004759 MtrunA17_Chr6g0453681 29.371 286 151 8 16 269 76 342 6.06e-23 100
MsaG004759 MtrunA17_Chr6g0468751 29.720 286 150 8 16 269 76 342 7.14e-23 100
MsaG004759 MtrunA17_Chr8g0345801 36.129 155 95 3 20 170 103 257 1.01e-22 96.7
MsaG004759 MtrunA17_Chr4g0069301 29.565 230 110 7 10 194 77 299 1.92e-22 98.6
MsaG004759 MtrunA17_Chr7g0244521 31.250 208 102 5 12 185 65 265 3.00e-22 98.2
MsaG004759 MtrunA17_Chr8g0346071 34.595 185 81 6 16 167 74 251 4.84e-22 97.4
MsaG004759 MtrunA17_Chr4g0013131 30.288 208 104 6 12 185 65 265 1.61e-21 96.3
MsaG004759 MtrunA17_Chr4g0074111 35.333 150 60 4 13 128 72 218 1.65e-21 95.5
MsaG004759 MtrunA17_Chr8g0346081 34.054 185 82 6 16 167 74 251 1.74e-21 95.9
MsaG004759 MtrunA17_Chr4g0008561 29.412 187 99 4 16 170 75 260 2.01e-21 96.7
MsaG004759 MtrunA17_Chr5g0441011 32.474 194 89 7 10 168 64 250 2.76e-21 95.1
MsaG004759 MtrunA17_Chr6g0453671 31.707 205 101 5 13 185 73 270 4.61e-21 94.0
MsaG004759 MtrunA17_Chr4g0001331 32.189 233 98 9 12 208 73 281 7.61e-21 94.0
MsaG004759 MtrunA17_Chr2g0284031 32.164 171 77 5 16 152 88 253 1.27e-20 93.6
MsaG004759 MtrunA17_Chr1g0150321 32.124 193 90 6 12 170 66 251 1.99e-20 92.4
MsaG004759 MtrunA17_Chr5g0428031 33.333 189 86 7 13 168 63 244 2.26e-20 92.4
MsaG004759 MtrunA17_Chr3g0132671 29.348 276 141 9 16 259 106 359 2.88e-20 92.8
MsaG004759 MtrunA17_Chr1g0205421 30.732 205 101 6 15 185 68 265 3.81e-20 92.0
MsaG004759 MtrunA17_Chr2g0302431 30.928 194 92 6 10 168 71 257 5.02e-20 91.7
MsaG004759 MtrunA17_Chr5g0432491 32.558 172 76 5 16 152 80 246 8.43e-20 90.9
MsaG004759 MtrunA17_Chr2g0284011 29.952 207 104 6 13 185 66 265 1.32e-19 90.1
MsaG004759 MtrunA17_Chr8g0379091 32.558 172 76 6 16 152 83 249 1.48e-19 90.5
MsaG004759 MtrunA17_Chr3g0107051 32.515 163 73 4 16 144 78 237 3.01e-19 89.4
MsaG004759 MtrunA17_Chr3g0107011 30.539 167 79 4 13 145 68 231 3.20e-19 89.4
MsaG004759 MtrunA17_Chr2g0333821 32.828 198 88 7 12 173 67 255 6.36e-19 88.2
MsaG004759 MtrunA17_Chr5g0432471 28.796 191 95 6 12 168 65 248 1.09e-18 87.8
MsaG004759 MtrunA17_Chr5g0441771 46.729 107 34 4 152 258 18 101 2.76e-18 79.7
MsaG004759 MtrunA17_Chr5g0428981 36.184 152 61 4 48 167 882 1029 3.91e-17 84.0
MsaG004759 MtrunA17_Chr4g0018201 36.842 152 60 4 48 167 878 1025 5.21e-17 83.6
MsaG004759 MtrunA17_Chr5g0426521 27.848 237 134 5 15 216 56 290 2.15e-16 79.7
MsaG004759 MtrunA17_Chr5g0441781 47.826 69 35 1 312 379 15 83 5.55e-16 72.8
MsaG004759 MtrunA17_Chr1g0162301 32.632 190 91 6 16 170 77 264 1.26e-15 77.8
MsaG004759 MtrunA17_Chr3g0091281 30.061 163 78 4 15 144 68 227 3.74e-15 74.7
MsaG004759 MtrunA17_Chr3g0091421 29.448 163 79 4 15 144 68 227 6.14e-15 73.9
MsaG004759 MtrunA17_Chr7g0244561 26.667 195 104 6 8 170 69 256 1.07e-14 75.5
MsaG004759 MtrunA17_Chr7g0245031 27.895 190 99 4 15 173 204 386 2.51e-14 74.3
MsaG004759 MtrunA17_Chr1g0170551 28.054 221 117 7 15 199 62 276 3.77e-14 74.7
MsaG004759 MtrunA17_Chr1g0188171 32.414 145 71 3 238 367 14 146 1.00e-13 68.2
MsaG004759 MtrunA17_Chr7g0254731 31.034 145 73 3 238 367 14 146 1.17e-12 65.5
MsaG004759 MtrunA17_Chr5g0440931 31.034 145 73 3 238 367 14 146 3.07e-12 63.9
MsaG004759 MtrunA17_Chr3g0093271 31.034 145 73 3 238 367 65 197 3.15e-12 65.5
MsaG004759 MtrunA17_Chr6g0460211 31.034 145 73 3 238 367 14 146 3.84e-12 63.9
MsaG004759 MtrunA17_Chr6g0450921 27.632 152 83 4 233 369 26 165 1.16e-11 62.8
MsaG004759 MtrunA17_Chr7g0245231 28.667 150 80 4 233 367 27 164 1.58e-11 62.8
MsaG004759 MtrunA17_Chr3g0135951 40.741 81 47 1 88 167 300 380 3.60e-11 64.7
MsaG004759 MtrunA17_Chr5g0440001 37.037 135 66 7 47 167 517 646 3.86e-11 64.7
MsaG004759 MtrunA17_Chr1g0166281 29.932 147 76 3 236 367 12 146 4.62e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004759 AT4G09570.1 57.718 447 98 8 12 400 79 492 6.27e-167 477
MsaG004759 AT1G35670.1 57.942 447 97 8 12 400 80 493 3.27e-166 475
MsaG004759 AT5G04870.1 52.058 413 117 6 12 370 204 589 6.71e-137 404
MsaG004759 AT3G10660.2 51.332 413 120 6 12 370 240 625 1.79e-135 402
MsaG004759 AT3G10660.1 51.332 413 120 6 12 370 240 625 1.79e-135 402
MsaG004759 AT5G23580.1 51.683 416 112 7 12 369 76 460 6.94e-135 395
MsaG004759 AT2G38910.1 53.041 411 112 6 12 368 188 571 4.38e-134 396
MsaG004759 AT4G35310.2 48.046 435 143 8 12 392 151 556 1.43e-130 387
MsaG004759 AT4G35310.1 48.046 435 143 8 12 392 151 556 1.43e-130 387
MsaG004759 AT2G17290.1 48.046 435 143 8 12 392 139 544 2.41e-128 380
MsaG004759 AT2G17290.2 48.046 435 143 8 12 392 139 544 2.41e-128 380
MsaG004759 AT4G38230.4 48.046 435 134 8 12 388 78 478 1.99e-127 376
MsaG004759 AT4G38230.3 48.046 435 134 8 12 388 78 478 1.99e-127 376
MsaG004759 AT4G38230.2 48.046 435 134 8 12 388 108 508 1.05e-126 375
MsaG004759 AT5G12180.1 44.965 427 145 8 12 379 127 522 9.25e-114 343
MsaG004759 AT5G19360.1 45.433 427 143 8 12 379 122 517 1.19e-113 342
MsaG004759 AT4G38230.1 50.136 367 121 7 49 387 1 333 3.33e-113 335
MsaG004759 AT1G50700.2 43.981 432 158 10 12 374 127 543 1.93e-112 340
MsaG004759 AT1G50700.1 44.976 418 148 9 12 374 127 517 3.53e-112 338
MsaG004759 AT3G20410.2 45.215 418 147 9 12 374 145 535 1.49e-111 337
MsaG004759 AT3G20410.1 45.215 418 147 9 12 374 145 535 1.49e-111 337
MsaG004759 AT4G04720.2 44.471 425 145 9 12 377 134 526 1.55e-110 334
MsaG004759 AT4G04720.1 44.471 425 145 9 12 377 134 526 1.55e-110 334
MsaG004759 AT1G76040.2 44.604 417 148 8 12 373 166 554 3.19e-110 335
MsaG004759 AT4G21940.1 44.258 418 142 9 12 370 156 541 2.90e-109 332
MsaG004759 AT4G21940.2 44.258 418 142 9 12 370 156 541 3.35e-109 332
MsaG004759 AT4G23650.1 43.026 423 159 7 12 379 132 527 3.37e-107 326
MsaG004759 AT1G18890.1 43.311 441 152 10 13 387 118 526 7.30e-103 315
MsaG004759 AT1G61950.1 43.826 413 149 9 12 368 152 537 1.46e-102 315
MsaG004759 AT1G74740.1 42.404 441 156 10 13 387 114 522 2.92e-101 311
MsaG004759 AT4G04740.4 41.882 425 156 9 12 377 123 515 1.24e-99 306
MsaG004759 AT4G04740.6 41.882 425 156 9 12 377 123 515 1.24e-99 306
MsaG004759 AT4G04740.5 41.882 425 156 9 12 377 123 515 1.24e-99 306
MsaG004759 AT4G04740.3 41.882 425 156 9 12 377 123 515 1.24e-99 306
MsaG004759 AT4G04740.1 41.882 425 156 9 12 377 123 515 1.24e-99 306
MsaG004759 AT4G04740.7 41.882 425 156 9 12 377 123 515 1.24e-99 306
MsaG004759 AT3G57530.1 41.727 417 159 8 12 372 117 505 9.89e-99 304
MsaG004759 AT5G12480.1 40.811 419 162 7 12 372 113 503 4.33e-97 300
MsaG004759 AT3G51850.1 40.367 436 167 8 12 386 108 511 1.01e-95 296
MsaG004759 AT4G04710.4 41.492 429 150 10 12 370 90 487 5.70e-93 288
MsaG004759 AT4G04710.3 41.706 422 144 10 12 370 76 458 1.79e-92 286
MsaG004759 AT4G04710.2 41.706 422 144 10 12 370 90 472 2.05e-92 286
MsaG004759 AT4G04710.1 41.492 429 148 10 12 370 90 485 3.54e-92 286
MsaG004759 AT4G04740.2 41.791 402 143 9 12 354 123 492 5.14e-92 287
MsaG004759 AT5G19450.2 40.189 423 159 9 12 372 111 501 6.30e-92 286
MsaG004759 AT5G19450.1 40.189 423 159 9 12 372 111 501 6.30e-92 286
MsaG004759 AT1G50700.3 44.658 365 121 8 12 322 127 464 9.78e-92 284
MsaG004759 AT1G76040.3 43.597 367 125 7 12 324 166 504 1.58e-90 282
MsaG004759 AT4G21940.3 43.089 369 120 8 12 322 156 492 1.14e-88 277
MsaG004759 AT2G41860.1 39.234 418 169 8 12 372 108 497 1.49e-88 278
MsaG004759 AT2G31500.1 38.337 433 181 9 13 386 121 526 1.70e-88 279
MsaG004759 AT2G41860.2 39.234 418 169 8 12 372 108 497 4.45e-88 276
MsaG004759 AT2G35890.2 45.210 334 115 5 12 303 186 493 6.43e-88 276
MsaG004759 AT2G35890.1 45.210 334 115 5 12 303 186 493 6.43e-88 276
MsaG004759 AT5G12480.2 39.948 383 172 7 20 372 55 409 8.08e-86 268
MsaG004759 AT3G51850.2 39.851 404 150 8 12 354 108 479 8.28e-86 270
MsaG004759 AT1G76040.1 44.620 316 122 7 83 373 29 316 1.03e-82 256
MsaG004759 AT1G76040.4 44.620 316 122 7 83 373 29 316 1.03e-82 256
MsaG004759 AT4G04695.1 38.353 425 175 9 12 377 82 478 4.25e-82 259
MsaG004759 AT3G57530.2 43.312 314 119 5 12 282 117 414 2.19e-79 251
MsaG004759 AT3G51850.3 42.500 320 124 4 12 289 108 409 2.84e-79 250
MsaG004759 AT4G04700.1 36.429 420 172 9 12 368 82 469 3.72e-75 242
MsaG004759 AT2G17890.1 34.398 407 197 8 13 368 163 550 4.28e-66 220
MsaG004759 AT5G66210.1 33.656 413 196 8 13 370 117 506 1.11e-65 218
MsaG004759 AT5G66210.2 33.656 413 196 8 13 370 117 506 1.11e-65 218
MsaG004759 AT5G66210.6 37.188 320 141 4 13 287 117 421 1.47e-62 207
MsaG004759 AT5G66210.4 37.188 320 141 4 13 287 117 421 1.47e-62 207
MsaG004759 AT5G66210.3 34.392 378 174 7 13 335 117 475 1.77e-62 209
MsaG004759 AT5G66210.5 34.584 373 170 7 13 330 117 470 5.46e-62 207
MsaG004759 AT4G36070.1 32.029 409 204 8 13 368 126 513 7.94e-62 208
MsaG004759 AT4G36070.2 31.873 411 206 8 13 370 126 515 1.52e-61 208
MsaG004759 AT3G50530.1 31.436 404 209 8 13 367 206 590 4.53e-58 199
MsaG004759 AT1G49580.1 30.637 408 208 9 13 367 208 593 3.65e-55 192
MsaG004759 AT2G46700.2 31.266 403 208 10 13 367 20 401 1.13e-54 186
MsaG004759 AT2G46700.3 31.266 403 208 10 13 367 20 401 1.13e-54 186
MsaG004759 AT2G41140.1 32.331 399 212 11 13 367 181 565 1.25e-53 187
MsaG004759 AT3G50530.2 29.425 435 208 9 13 367 206 621 4.35e-53 187
MsaG004759 AT2G46700.1 31.017 403 209 9 13 367 201 582 1.07e-52 185
MsaG004759 AT3G19100.1 31.144 411 201 11 13 367 202 586 2.58e-52 184
MsaG004759 AT3G56760.1 31.830 399 214 11 13 367 182 566 5.01e-52 183
MsaG004759 AT1G12580.1 48.108 185 66 1 13 167 99 283 7.34e-50 176
MsaG004759 AT5G24430.1 38.912 239 115 1 13 220 201 439 3.60e-46 167
MsaG004759 AT3G49370.1 30.026 383 224 6 13 360 200 573 2.13e-45 165
MsaG004759 AT1G12680.1 36.434 258 112 6 12 239 154 389 6.98e-42 154
MsaG004759 AT1G08650.1 34.951 206 100 5 13 186 70 273 4.19e-32 123
MsaG004759 AT1G08650.2 36.082 194 90 5 13 174 70 261 1.07e-31 122
MsaG004759 AT3G04530.1 34.928 209 100 5 13 188 66 271 1.42e-30 119
MsaG004759 AT3G01090.3 29.653 317 162 9 16 290 76 373 4.28e-27 113
MsaG004759 AT3G01090.1 29.653 317 162 9 16 290 76 373 4.28e-27 113
MsaG004759 AT3G01090.2 29.653 317 162 9 16 290 99 396 6.02e-27 112
MsaG004759 AT3G29160.3 30.556 288 149 8 16 271 77 345 7.90e-27 110
MsaG004759 AT3G29160.1 30.556 288 149 8 16 271 77 345 3.56e-26 110
MsaG004759 AT3G29160.2 30.556 288 149 8 16 271 77 345 3.56e-26 110
MsaG004759 AT1G01140.2 34.021 194 88 6 10 168 70 258 4.97e-25 106
MsaG004759 AT4G32830.1 33.023 215 97 7 16 193 88 292 5.34e-25 103
MsaG004759 AT1G01140.3 34.536 194 85 7 10 168 70 256 1.41e-24 105
MsaG004759 AT1G01140.1 34.536 194 85 7 10 168 70 256 1.49e-24 105
MsaG004759 AT5G57630.1 36.257 171 75 3 8 147 61 228 1.92e-24 104
MsaG004759 AT5G57630.2 36.257 171 75 3 8 147 61 228 1.96e-24 104
MsaG004759 AT4G30960.1 34.211 190 84 6 13 168 78 260 2.02e-24 104
MsaG004759 AT5G10930.1 35.052 194 81 7 13 170 67 251 2.68e-24 104
MsaG004759 AT5G39440.1 26.603 312 180 8 16 290 76 375 2.93e-24 104
MsaG004759 AT2G25880.1 31.628 215 100 7 16 193 82 286 3.03e-24 101
MsaG004759 AT2G25880.4 31.628 215 100 7 16 193 95 299 3.28e-24 102
MsaG004759 AT2G25880.3 31.481 216 101 7 15 193 142 347 9.46e-24 101
MsaG004759 AT5G25110.1 34.343 198 85 7 12 173 96 284 1.32e-23 102
MsaG004759 AT1G48260.1 32.995 197 88 6 8 168 60 248 2.23e-23 101
MsaG004759 AT1G30270.1 32.653 196 86 8 10 168 82 268 4.47e-23 101
MsaG004759 AT1G30270.2 32.653 196 86 8 10 168 82 268 5.26e-23 100
MsaG004759 AT2G25880.2 32.432 185 106 6 16 193 82 254 7.20e-23 97.1
MsaG004759 AT1G49180.2 34.395 157 72 2 15 140 62 218 8.84e-23 99.4
MsaG004759 AT3G17510.1 31.472 197 91 6 8 168 69 257 1.06e-22 99.8
MsaG004759 AT3G23000.1 32.984 191 87 6 12 168 79 262 1.25e-22 99.4
MsaG004759 AT1G49180.1 34.395 157 72 2 15 140 62 218 1.42e-22 99.0
MsaG004759 AT5G35410.2 32.275 189 88 7 13 168 65 246 2.98e-22 97.8
MsaG004759 AT2G26980.2 32.474 194 89 7 10 168 65 251 3.15e-22 95.9
MsaG004759 AT5G58380.1 28.846 208 107 6 12 185 65 265 4.61e-22 98.2
MsaG004759 AT5G35410.1 32.275 189 88 7 13 168 65 246 6.69e-22 97.4
MsaG004759 AT2G26980.5 30.698 215 107 7 10 189 65 272 7.84e-22 97.1
MsaG004759 AT2G26980.1 30.698 215 107 7 10 189 65 272 7.93e-22 96.7
MsaG004759 AT2G26980.3 30.698 215 107 7 10 189 65 272 1.23e-21 96.7
MsaG004759 AT5G45810.1 33.690 187 83 7 16 168 85 264 1.41e-21 96.7
MsaG004759 AT2G26980.4 30.698 215 107 7 10 189 75 282 1.42e-21 96.7
MsaG004759 AT2G45490.1 30.244 205 105 5 16 189 79 276 2.65e-21 93.6
MsaG004759 AT4G18700.1 30.882 204 100 6 16 185 83 279 3.19e-21 95.9
MsaG004759 AT2G30360.1 31.383 188 87 6 16 168 79 259 3.52e-21 95.1
MsaG004759 AT5G45820.1 30.918 207 102 6 13 185 66 265 3.68e-21 95.1
MsaG004759 AT3G53930.1 32.258 155 100 4 20 170 108 261 1.38e-20 94.4
MsaG004759 AT3G53930.2 32.258 155 100 4 20 170 108 261 1.43e-20 94.4
MsaG004759 AT1G30270.3 33.908 174 69 8 32 168 7 171 5.67e-20 91.3
MsaG004759 AT2G37840.1 29.947 187 98 4 16 170 68 253 8.26e-20 92.0
MsaG004759 AT2G25090.1 31.841 201 88 7 12 170 69 262 8.66e-20 91.3
MsaG004759 AT2G38490.1 33.125 160 70 4 15 140 84 240 8.73e-20 91.3
MsaG004759 AT5G01810.3 30.052 193 94 6 10 168 63 248 9.96e-20 90.5
MsaG004759 AT5G57630.3 46.078 102 50 2 48 147 42 140 1.11e-19 89.7
MsaG004759 AT5G01810.1 30.052 193 94 6 10 168 63 248 1.11e-19 90.9
MsaG004759 AT5G01810.2 30.052 193 94 6 10 168 63 248 1.11e-19 90.9
MsaG004759 AT2G45490.2 30.601 183 89 5 16 167 79 254 2.69e-19 87.0
MsaG004759 AT3G17510.2 33.526 173 71 6 32 168 13 177 4.21e-19 88.6
MsaG004759 AT1G48260.2 35.088 171 67 6 34 168 1 163 8.50e-19 87.4
MsaG004759 AT1G48260.4 35.088 171 67 6 34 168 1 163 8.50e-19 87.4
MsaG004759 AT1G48260.3 35.088 171 67 6 34 168 1 163 8.50e-19 87.4
MsaG004759 AT1G48260.5 35.088 171 67 6 34 168 1 163 8.50e-19 87.4
MsaG004759 AT5G62310.1 32.512 203 62 7 32 167 827 1021 9.77e-19 89.0
MsaG004759 AT4G24400.2 36.242 149 59 5 13 128 63 208 1.15e-18 87.8
MsaG004759 AT4G24400.1 30.332 211 98 7 13 181 63 266 1.51e-18 87.4
MsaG004759 AT5G07070.1 29.327 208 106 6 12 185 65 265 1.18e-17 84.7
MsaG004759 AT3G61960.1 29.255 188 101 3 15 170 65 252 2.30e-17 84.7
MsaG004759 AT3G61960.2 29.255 188 101 3 15 170 65 252 2.79e-17 84.3
MsaG004759 AT1G45160.1 32.432 185 82 6 18 167 757 933 4.50e-17 84.0
MsaG004759 AT1G45160.2 32.432 185 82 6 18 167 757 933 4.62e-17 84.0
MsaG004759 AT2G23030.1 29.756 205 107 5 16 185 57 259 1.31e-16 80.9
MsaG004759 AT1G29230.1 30.890 191 87 7 15 171 130 309 4.23e-16 80.5
MsaG004759 AT4G33950.2 31.606 193 95 5 16 173 74 264 6.12e-16 79.0
MsaG004759 AT4G33950.1 31.606 193 95 5 16 173 74 264 7.62e-16 79.0
MsaG004759 AT1G10940.1 27.234 235 125 7 16 206 57 289 7.20e-15 75.9
MsaG004759 AT5G01820.1 31.548 168 78 4 12 145 75 239 9.33e-15 75.9
MsaG004759 AT1G48490.3 34.416 154 62 6 48 170 947 1092 1.37e-14 76.3
MsaG004759 AT1G48490.2 34.416 154 62 6 48 170 947 1092 1.37e-14 76.3
MsaG004759 AT1G48490.1 34.416 154 62 6 48 170 947 1092 1.37e-14 76.3
MsaG004759 AT1G48490.4 34.416 154 62 6 48 170 948 1093 1.37e-14 76.3
MsaG004759 AT1G10940.2 26.337 243 125 7 16 206 57 297 5.92e-14 73.2
MsaG004759 AT3G08730.1 31.034 145 66 3 15 128 190 331 6.67e-14 73.6
MsaG004759 AT3G08730.2 31.034 145 66 3 15 128 190 331 6.67e-14 73.6
MsaG004759 AT3G59440.1 32.414 145 82 3 237 371 52 190 1.25e-13 69.7
MsaG004759 AT3G50360.1 28.750 160 86 5 225 369 17 163 2.03e-13 68.6
MsaG004759 AT1G05990.1 32.051 156 68 5 237 370 6 145 4.66e-13 67.0
MsaG004759 AT2G43290.1 31.944 144 88 2 237 370 66 209 4.71e-13 68.6
MsaG004759 AT1G50240.3 29.167 168 83 5 15 150 61 224 4.91e-13 71.6
MsaG004759 AT1G50240.2 29.167 168 83 5 15 150 61 224 4.91e-13 71.6
MsaG004759 AT1G03920.1 25.446 224 86 6 19 167 197 414 1.17e-12 70.1
MsaG004759 AT1G03920.3 25.446 224 86 6 19 167 197 414 1.17e-12 70.1
MsaG004759 AT1G03920.2 25.446 224 86 6 19 167 84 301 1.30e-12 69.3
MsaG004759 AT3G56800.1 31.724 145 72 3 238 367 14 146 2.35e-12 64.7
MsaG004759 AT2G41110.1 31.724 145 72 3 238 367 14 146 2.35e-12 64.7
MsaG004759 AT2G27030.1 31.724 145 72 3 238 367 14 146 2.35e-12 64.7
MsaG004759 AT2G27030.3 31.724 145 72 3 238 367 14 146 2.81e-12 65.5
MsaG004759 AT5G21274.1 31.034 145 73 3 238 367 14 146 3.33e-12 64.3
MsaG004759 AT3G43810.2 31.034 145 73 3 238 367 14 146 3.91e-12 65.9
MsaG004759 AT3G43810.1 31.034 145 73 3 238 367 14 146 5.30e-12 63.9
MsaG004759 AT1G66410.1 30.345 145 74 3 238 367 14 146 1.44e-11 62.4
MsaG004759 AT5G37780.1 30.345 145 74 3 238 367 14 146 1.44e-11 62.4
MsaG004759 AT4G03290.1 29.114 158 72 4 237 370 6 147 2.22e-11 62.0
MsaG004759 AT1G30640.3 24.242 264 101 8 17 200 85 329 2.50e-11 65.5
MsaG004759 AT4G14640.1 31.034 145 73 3 238 367 15 147 3.03e-11 61.6
MsaG004759 AT2G41100.7 28.395 162 72 3 238 367 68 217 4.42e-11 63.9
MsaG004759 AT2G41100.6 28.395 162 72 3 238 367 68 217 4.42e-11 63.9
MsaG004759 AT2G41100.3 28.395 162 72 3 238 367 68 217 4.42e-11 63.9
MsaG004759 AT4G37010.1 26.590 173 99 5 213 369 3 163 6.21e-11 61.2
MsaG004759 AT4G37010.2 26.590 173 99 5 213 369 7 167 6.90e-11 61.2
MsaG004759 AT2G41100.4 28.395 162 72 3 238 367 103 252 7.41e-11 63.5
MsaG004759 AT2G41100.1 28.395 162 72 3 238 367 103 252 7.41e-11 63.5

Find 84 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGGATGTTCAGATAAA+TGG 0.201708 1:+73541448 None:intergenic
GAAATGAAGGCAACAGATTT+TGG 0.209538 1:-73541191 MsaT004759.1:CDS
GAAGTTTATATTCCCTTTCT+TGG 0.234466 1:+73538871 None:intergenic
GATGGAAAGAGAGGAGAATT+TGG 0.253420 1:-73539289 MsaT004759.1:CDS
GGATTCTGTGTTTGTGCATT+TGG 0.319764 1:-73541400 MsaT004759.1:CDS
TTCAATATTGCAGATGCATT+TGG 0.319814 1:-73538851 MsaT004759.1:CDS
CAGGATGGGAGAATCGATTA+TGG 0.321150 1:-73538950 MsaT004759.1:CDS
CTCAGAAAGTGCTAAAGATT+TGG 0.334039 1:-73539988 MsaT004759.1:CDS
GAGTTATTGTGTAAGATATA+TGG 0.339452 1:-73540293 MsaT004759.1:CDS
CCTTGTATCTGAACCACATT+TGG 0.348326 1:+73541432 None:intergenic
AATGGAGTATATGTATTATC+AGG 0.355757 1:-73539825 MsaT004759.1:CDS
AATCGAGATTAAATCCCTTA+TGG 0.368744 1:-73539463 MsaT004759.1:CDS
CGTTGCACCTGACCAGCCTT+TGG 0.383427 1:-73539778 MsaT004759.1:CDS
CAACAAGCTTGCAAAGACTT+TGG 0.386462 1:-73539208 MsaT004759.1:CDS
ATGGACCACAAGTTGATGTT+TGG 0.388218 1:-73540274 MsaT004759.1:CDS
TTGACACGTCTAAAACATTT+CGG 0.391368 1:-73539744 MsaT004759.1:intron
AGACTATCAGAGGAAGAAAT+AGG 0.395182 1:-73539589 MsaT004759.1:CDS
GCTACCGCCTTTGTCAAAAT+AGG 0.398638 1:+73539255 None:intergenic
TGAAGTCTTATGAGTTCCTT+TGG 0.405383 1:-73539920 MsaT004759.1:intron
CAATTGTTACCAGCCCAAAA+AGG 0.415473 1:+73540209 None:intergenic
CTCTCTGTGTTCTACAAGCC+AGG 0.426519 1:-73541167 MsaT004759.1:intron
GCAGAATCCAAAGGCTGGTC+AGG 0.427027 1:+73539771 None:intergenic
CAAGTTGATGTTTGGAGTGC+TGG 0.429998 1:-73540266 MsaT004759.1:CDS
TAACTCAGGAGCAATATAGT+AGG 0.432197 1:+73540310 None:intergenic
ATCCACTTACCGACTCCATA+AGG 0.433247 1:+73539448 None:intergenic
TAACCTCCAGAAACCGAATC+AGG 0.443312 1:-73540071 MsaT004759.1:intron
AGTTATTGTCCCACTGTTGT+CGG 0.444747 1:+73539535 None:intergenic
TGGCCTCGGTGAAGTACATC+TGG 0.453511 1:-73539188 MsaT004759.1:CDS
TCTATATCAGCCTGCAAAGA+AGG 0.453646 1:+73539365 None:intergenic
AACAGTGGAACAATAGACTA+TGG 0.461109 1:-73539341 MsaT004759.1:intron
TTCATTTCAGCATCTTCACC+AGG 0.462856 1:+73541206 None:intergenic
AGATTTGGTAAGAAAGATGT+TGG 0.463957 1:-73539973 MsaT004759.1:CDS
ATGTATTATCAGGTCATCCT+TGG 0.474762 1:-73539815 MsaT004759.1:CDS
CAAACCTTTCACAGCGTAGT+TGG 0.475014 1:-73540338 MsaT004759.1:CDS
TTGGTGATGGAGCTGTGTGC+TGG 0.478782 1:-73541381 MsaT004759.1:CDS
TGTGTTTGTGCATTTGGTGA+TGG 0.483965 1:-73541394 MsaT004759.1:CDS
CTTTCTGAGATCGTTGGCCA+TGG 0.484375 1:+73540002 None:intergenic
GTATCAAACAAGAAATTCTC+AGG 0.489292 1:+73541230 None:intergenic
GCTTGCAAAGACTTTGGCCT+CGG 0.496996 1:-73539202 MsaT004759.1:CDS
CAGTGGGACAATAACTTATG+AGG 0.500402 1:-73539528 MsaT004759.1:CDS
AATCGATTATGGAGAGTTTG+TGG 0.502319 1:-73538939 MsaT004759.1:CDS
TCCACTTACCGACTCCATAA+GGG 0.505364 1:+73539449 None:intergenic
CCAAATGTGGTTCAGATACA+AGG 0.506898 1:-73541432 MsaT004759.1:CDS
AATTTCTTGTTTGATACCCC+TGG 0.508273 1:-73541224 MsaT004759.1:CDS
GGTAGGAGCAGAACCAAGAA+AGG 0.513015 1:-73538884 MsaT004759.1:CDS
ACAAGTGGGCTCTAATCTCA+TGG 0.542451 1:-73539486 MsaT004759.1:CDS
CACAAACACAGAATCCTCAT+AGG 0.547597 1:+73541407 None:intergenic
TTAGCACTTTCTGAGATCGT+TGG 0.549981 1:+73539996 None:intergenic
CTTGAATAAGATGGAAAGAG+AGG 0.552015 1:-73539298 MsaT004759.1:intron
ATCTTATACATCTTATTGAG+CGG 0.556010 1:-73540239 MsaT004759.1:CDS
TGGTAAGAAAGATGTTGGAG+AGG 0.556020 1:-73539968 MsaT004759.1:CDS
AAACAGCAGAATCCAAAGGC+TGG 0.561995 1:+73539766 None:intergenic
AACTCAGGAGCAATATAGTA+GGG 0.566045 1:+73540311 None:intergenic
ACTTCCAACTACGCTGTGAA+AGG 0.570131 1:+73540334 None:intergenic
TGGTGAAGATGCTGAAATGA+AGG 0.574758 1:-73541204 MsaT004759.1:CDS
AATAACTTATGAGGAACTCA+AGG 0.575259 1:-73539519 MsaT004759.1:CDS
CAAAGGCTGGTCAGGTGCAA+CGG 0.576746 1:+73539779 None:intergenic
GGTAAGAAAGATGTTGGAGA+GGG 0.583357 1:-73539967 MsaT004759.1:CDS
CATAGCGGAAAGACTATCAG+AGG 0.586246 1:-73539599 MsaT004759.1:CDS
GTGACGATGATCAGGTTGGT+AGG 0.594926 1:-73538901 MsaT004759.1:CDS
AGCTTGTTGAAGCTCGTCAA+TGG 0.597893 1:+73539222 None:intergenic
TGATTGACACCGACAACAGT+GGG 0.600963 1:-73539544 MsaT004759.1:CDS
CAAGGATGGTCTAAAACAAG+TGG 0.601038 1:-73539501 MsaT004759.1:CDS
CATTTCAGCATCTTCACCAG+GGG 0.602546 1:+73541208 None:intergenic
TATCAGAGGAAGAAATAGGC+GGG 0.604778 1:-73539585 MsaT004759.1:CDS
TTTATCTGAACATCCAAATG+TGG 0.608864 1:-73541445 MsaT004759.1:CDS
ACGGTATCATCAAGAATCCA+AGG 0.609613 1:+73539798 None:intergenic
TATATCTTACACAATAACTC+AGG 0.616607 1:+73540296 None:intergenic
ACTTATGAGGAACTCAAGGA+TGG 0.619750 1:-73539515 MsaT004759.1:CDS
CGTAGGATATCTAATGACAA+TGG 0.620855 1:-73539843 MsaT004759.1:intron
GTGATGGAGCTGTGTGCTGG+TGG 0.624187 1:-73541378 MsaT004759.1:CDS
AGGAGGATTATGATGATGTG+TGG 0.625341 1:-73541489 None:intergenic
TCAGATACAAGGAACCTATG+AGG 0.628799 1:-73541421 MsaT004759.1:CDS
ATGATTGACACCGACAACAG+TGG 0.632439 1:-73539545 MsaT004759.1:CDS
TCATTTCAGCATCTTCACCA+GGG 0.636804 1:+73541207 None:intergenic
GTAGGAGCAGAACCAAGAAA+GGG 0.638682 1:-73538883 MsaT004759.1:CDS
AAGGATGGTCTAAAACAAGT+GGG 0.648518 1:-73539500 MsaT004759.1:CDS
AAAGGTGACGATGATCAGGT+TGG 0.654074 1:-73538905 MsaT004759.1:CDS
GTCAAAACAGCAGAATCCAA+AGG 0.657576 1:+73539762 None:intergenic
CTATCAGAGGAAGAAATAGG+CGG 0.678077 1:-73539586 MsaT004759.1:CDS
GCACTCCAAACATCAACTTG+TGG 0.700213 1:+73540269 None:intergenic
CAGGCTGATATAGACAACAG+TGG 0.711115 1:-73539356 MsaT004759.1:CDS
ATATTATTTCCAGGTCATAG+CGG 0.723871 1:-73539614 MsaT004759.1:intron
CATCCAGATGTACTTCACCG+AGG 0.779417 1:+73539185 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 73538829 73541502 73538829 ID=MsaG004759
Chr1 mRNA 73538829 73541502 73538829 ID=MsaT004759.1;Parent=MsaG004759
Chr1 exon 73538829 73538969 73538829 ID=MsaT004759.1.exon9;Parent=MsaT004759.1
Chr1 CDS 73538829 73538969 73538829 ID=cds.MsaT004759.1;Parent=MsaT004759.1
Chr1 exon 73539156 73539310 73539156 ID=MsaT004759.1.exon8;Parent=MsaT004759.1
Chr1 CDS 73539156 73539310 73539156 ID=cds.MsaT004759.1;Parent=MsaT004759.1
Chr1 exon 73539342 73539416 73539342 ID=MsaT004759.1.exon7;Parent=MsaT004759.1
Chr1 CDS 73539342 73539416 73539342 ID=cds.MsaT004759.1;Parent=MsaT004759.1
Chr1 exon 73539462 73539623 73539462 ID=MsaT004759.1.exon6;Parent=MsaT004759.1
Chr1 CDS 73539462 73539623 73539462 ID=cds.MsaT004759.1;Parent=MsaT004759.1
Chr1 exon 73539745 73539860 73539745 ID=MsaT004759.1.exon5;Parent=MsaT004759.1
Chr1 CDS 73539745 73539860 73539745 ID=cds.MsaT004759.1;Parent=MsaT004759.1
Chr1 exon 73539921 73540083 73539921 ID=MsaT004759.1.exon4;Parent=MsaT004759.1
Chr1 CDS 73539921 73540083 73539921 ID=cds.MsaT004759.1;Parent=MsaT004759.1
Chr1 exon 73540219 73540362 73540219 ID=MsaT004759.1.exon3;Parent=MsaT004759.1
Chr1 CDS 73540219 73540362 73540219 ID=cds.MsaT004759.1;Parent=MsaT004759.1
Chr1 exon 73541168 73541262 73541168 ID=MsaT004759.1.exon2;Parent=MsaT004759.1
Chr1 CDS 73541168 73541262 73541168 ID=cds.MsaT004759.1;Parent=MsaT004759.1
Chr1 exon 73541351 73541502 73541351 ID=MsaT004759.1.exon1;Parent=MsaT004759.1
Chr1 CDS 73541351 73541502 73541351 ID=cds.MsaT004759.1;Parent=MsaT004759.1
Gene Sequence

>MsaT004759.1

ATGATGATGTGTGGAGAGAGATTCAGATCATGCCATTTATCTGAACATCCAAATGTGGTTCAGATACAAGGAACCTATGAGGATTCTGTGTTTGTGCATTTGGTGATGGAGCTGTGTGCTGGTGGTGAACTTTTTGATAAGATCATTCAAAGAGATCTTAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCTGAAATGAAGGCAACAGATTTTGGTCTCTCTGTGTTCTACAAGCCAGGACAAACCTTTCACAGCGTAGTTGGAAGTCCCTACTATATTGCTCCTGAGTTATTGTGTAAGATATATGGACCACAAGTTGATGTTTGGAGTGCTGGTGTTATCTTATACATCTTATTGAGCGGTGTTCCACCTTTTTGGGCTGAAACCGAATCAGGAATTTTTAGACAGATTTTACATGGAGATCTTGATTTTGAATCGGAACCATGGCCAACGATCTCAGAAAGTGCTAAAGATTTGGTAAGAAAGATGTTGGAGAGGGACCTAAGAAAAGAATCTCTGCTCATGAAGTCTTATGAGTTCCTTTGGATATCTAATGACAATGGAGTATATGTATTATCAGGTCATCCTTGGATTCTTGATGATACCGTTGCACCTGACCAGCCTTTGGATTCTGCTGTTTTGACACGTCTAAAACATTTCGGTCATAGCGGAAAGACTATCAGAGGAAGAAATAGGCGGGTTAAAGAGTTATTCAAAATGATTGACACCGACAACAGTGGGACAATAACTTATGAGGAACTCAAGGATGGTCTAAAACAAGTGGGCTCTAATCTCATGGAATCGAGATTAAATCCCTTATGGAGTGTTTTATGTTACTTCAAATTTTGCTTTCCTTCTTTGCAGGCTGATATAGACAACAGTGGAACAATAGACTATGATGGAAAGAGAGGAGAATTTGGTTGCAGCTTTGCCTATTTTGACAAAGGCGGTAGCGGTTACATCACCATTGACGAGCTTCAACAAGCTTGCAAAGACTTTGGCCTCGGTGAAGTACATCTGGATGACATGATCAAAGAGATTGATCAAGATAATGATGGGAGAATCGATTATGGAGAGTTTGTGGCGATGATGAAAAAAGGTGACGATGATCAGGTTGGTAGGAGCAGAACCAAGAAAGGGAATATAAACTTCAATATTGCAGATGCATTTGGAGTGAAAGAAGAATCTTCTTGA

Protein sequence

>MsaT004759.1

MMMCGERFRSCHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDKIIQRDLKPENFLFDTPGEDAEMKATDFGLSVFYKPGQTFHSVVGSPYYIAPELLCKIYGPQVDVWSAGVILYILLSGVPPFWAETESGIFRQILHGDLDFESEPWPTISESAKDLVRKMLERDLRKESLLMKSYEFLWISNDNGVYVLSGHPWILDDTVAPDQPLDSAVLTRLKHFGHSGKTIRGRNRRVKELFKMIDTDNSGTITYEELKDGLKQVGSNLMESRLNPLWSVLCYFKFCFPSLQADIDNSGTIDYDGKRGEFGCSFAYFDKGGSGYITIDELQQACKDFGLGEVHLDDMIKEIDQDNDGRIDYGEFVAMMKKGDDDQVGRSRTKKGNINFNIADAFGVKEESS*