AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG004760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004760 MtrunA17_Chr1g0200571 98.551 276 3 1 277 551 1 276 0.0 548
MsaG004760 MtrunA17_Chr1g0200561 98.084 261 3 2 11 270 35 294 0.0 541
MsaG004760 MtrunA17_Chr5g0411031 60.079 253 101 0 295 547 6 258 5.36e-107 321
MsaG004760 MtrunA17_Chr8g0372121 55.895 229 82 4 11 236 22 234 2.58e-81 256
MsaG004760 MtrunA17_Chr5g0405211 54.202 238 89 5 11 245 24 244 5.40e-80 254
MsaG004760 MtrunA17_Chr4g0018391 78.358 134 29 0 11 144 23 156 1.49e-74 240
MsaG004760 MtrunA17_Chr4g0056541 76.119 134 32 0 11 144 23 156 9.28e-72 233
MsaG004760 MtrunA17_Chr5g0398971 72.794 136 35 2 11 144 23 158 9.44e-67 220
MsaG004760 MtrunA17_Chr2g0309331 46.245 253 104 5 11 258 26 251 7.35e-63 209
MsaG004760 MtrunA17_Chr4g0017921 68.657 134 41 1 11 144 24 156 1.90e-61 206
MsaG004760 MtrunA17_Chr8g0346001 66.216 148 35 2 10 144 30 175 2.74e-61 208
MsaG004760 MtrunA17_Chr6g0481091 54.412 136 59 2 11 144 22 156 7.84e-46 161
MsaG004760 MtrunA17_Chr2g0309891 54.745 137 58 2 11 144 22 157 2.52e-45 163
MsaG004760 MtrunA17_Chr5g0433781 54.412 136 59 2 11 144 22 156 1.32e-44 167
MsaG004760 MtrunA17_Chr3g0109821 52.518 139 62 2 11 146 22 159 3.18e-43 163
MsaG004760 MtrunA17_Chr2g0312321 51.429 140 57 4 9 144 26 158 3.93e-43 155
MsaG004760 MtrunA17_Chr6g0484441 48.227 141 70 1 11 151 21 158 2.48e-42 154
MsaG004760 MtrunA17_Chr3g0091921 52.174 138 59 3 11 144 32 166 8.35e-42 152
MsaG004760 MtrunA17_Chr4g0042561 50.714 140 60 3 11 144 25 161 1.63e-41 150
MsaG004760 MtrunA17_Chr4g0060931 49.306 144 66 3 11 150 33 173 7.99e-41 151
MsaG004760 MtrunA17_Chr7g0253011 49.324 148 64 4 12 151 34 178 1.52e-40 151
MsaG004760 MtrunA17_Chr2g0318081 47.183 142 70 2 12 151 33 171 1.79e-40 150
MsaG004760 MtrunA17_Chr7g0217721 48.366 153 53 3 12 144 36 182 2.42e-40 149
MsaG004760 MtrunA17_Chr7g0261411 50.704 142 62 5 3 142 19 154 2.64e-40 147
MsaG004760 MtrunA17_Chr8g0359921 38.350 206 102 5 12 197 31 231 4.32e-40 148
MsaG004760 MtrunA17_Chr3g0139331 34.959 246 134 6 8 243 26 255 1.33e-39 147
MsaG004760 MtrunA17_Chr1g0183741 51.471 136 59 4 11 144 26 156 2.82e-39 144
MsaG004760 MtrunA17_Chr5g0417791 47.857 140 64 2 11 144 19 155 3.45e-39 144
MsaG004760 MtrunA17_Chr7g0214071 48.276 145 67 2 12 154 32 170 9.97e-39 142
MsaG004760 MtrunA17_Chr1g0147421 50.365 137 62 3 11 144 43 176 1.39e-38 145
MsaG004760 MtrunA17_Chr7g0252971 45.033 151 61 4 11 144 24 169 3.81e-38 143
MsaG004760 MtrunA17_Chr8g0364791 46.309 149 73 3 10 154 21 166 5.34e-38 145
MsaG004760 MtrunA17_Chr1g0197351 50.704 142 61 3 11 144 58 198 5.76e-38 145
MsaG004760 MtrunA17_Chr6g0453451 48.571 140 65 2 11 146 36 172 8.07e-38 142
MsaG004760 MtrunA17_Chr2g0316971 47.552 143 60 4 11 144 39 175 9.72e-38 143
MsaG004760 MtrunA17_Chr3g0130101 45.517 145 74 3 11 152 23 165 2.46e-37 141
MsaG004760 MtrunA17_Chr7g0217711 55.856 111 46 1 12 122 36 143 4.18e-37 135
MsaG004760 MtrunA17_Chr6g0461661 46.939 147 69 4 4 144 27 170 5.50e-37 141
MsaG004760 MtrunA17_Chr3g0128111 47.143 140 71 2 11 148 58 196 7.77e-37 137
MsaG004760 MtrunA17_Chr4g0054791 47.586 145 70 3 11 150 22 165 1.46e-36 138
MsaG004760 MtrunA17_Chr5g0400461 47.183 142 64 4 11 144 22 160 4.85e-36 137
MsaG004760 MtrunA17_Chr3g0130731 46.043 139 66 3 11 144 23 157 7.62e-36 135
MsaG004760 MtrunA17_Chr5g0428991 41.000 200 111 3 11 204 41 239 1.28e-35 141
MsaG004760 MtrunA17_Chr8g0384201 45.333 150 73 4 10 154 21 166 1.39e-35 139
MsaG004760 MtrunA17_Chr4g0047841 40.476 168 70 5 11 151 31 195 2.77e-35 135
MsaG004760 MtrunA17_Chr8g0384721 45.714 140 66 3 11 144 23 158 4.98e-35 133
MsaG004760 MtrunA17_Chr3g0128151 49.265 136 66 2 11 144 38 172 6.24e-35 139
MsaG004760 MtrunA17_Chr6g0453131 43.836 146 67 4 11 144 31 173 6.29e-35 135
MsaG004760 MtrunA17_Chr3g0124761 45.324 139 67 3 11 144 23 157 8.82e-35 132
MsaG004760 MtrunA17_Chr2g0318101 43.226 155 69 5 11 150 31 181 1.80e-34 133
MsaG004760 MtrunA17_Chr3g0144271 57.143 105 40 2 28 130 57 158 4.76e-34 134
MsaG004760 MtrunA17_Chr5g0417001 35.981 214 113 6 11 211 30 232 4.87e-34 133
MsaG004760 MtrunA17_Chr8g0361731 43.537 147 67 4 11 144 30 173 5.81e-34 133
MsaG004760 MtrunA17_Chr2g0326361 46.479 142 65 4 11 144 30 168 9.75e-34 130
MsaG004760 MtrunA17_Chr7g0263931 43.662 142 69 3 11 144 27 165 3.55e-33 129
MsaG004760 MtrunA17_Chr1g0201021 45.205 146 73 3 11 152 35 177 4.39e-33 133
MsaG004760 MtrunA17_Chr3g0092671 43.750 144 78 3 11 152 21 163 1.01e-32 132
MsaG004760 MtrunA17_Chr3g0113001 51.786 112 46 3 44 150 14 122 8.03e-32 124
MsaG004760 MtrunA17_Chr1g0197361 42.000 150 82 4 6 152 19 166 8.96e-32 129
MsaG004760 MtrunA17_Chr4g0076731 40.000 145 77 4 11 151 70 208 4.47e-30 122
MsaG004760 MtrunA17_Chr2g0321741 45.238 126 62 3 15 140 12 130 1.52e-29 119
MsaG004760 MtrunA17_Chr4g0038751 43.796 137 68 3 11 144 31 161 5.25e-29 116
MsaG004760 MtrunA17_Chr2g0311651 41.060 151 70 4 11 144 38 186 9.48e-29 116
MsaG004760 MtrunA17_Chr8g0385991 43.478 138 64 4 12 140 31 163 1.12e-28 114
MsaG004760 MtrunA17_Chr5g0442771 39.189 148 73 4 11 144 34 178 8.68e-28 113
MsaG004760 MtrunA17_Chr2g0311661 40.397 151 71 4 11 144 37 185 1.02e-27 112
MsaG004760 MtrunA17_Chr3g0113031 56.522 92 30 2 61 144 3 92 1.19e-27 112
MsaG004760 MtrunA17_Chr3g0131911 40.764 157 72 5 11 153 30 179 6.33e-27 109
MsaG004760 MtrunA17_Chr4g0026141 40.000 140 76 4 11 142 21 160 1.10e-25 106
MsaG004760 MtrunA17_Chr8g0345671 34.234 222 130 11 11 223 27 241 1.37e-24 106
MsaG004760 MtrunA17_Chr2g0321631 38.194 144 74 6 11 142 20 160 3.94e-23 98.6
MsaG004760 MtrunA17_Chr7g0243371 50.000 84 40 2 49 130 15 98 1.06e-22 93.6
MsaG004760 MtrunA17_Chr4g0050701 35.417 144 72 4 11 144 27 159 2.43e-22 94.7
MsaG004760 MtrunA17_Chr8g0345741 44.737 114 58 4 11 121 7 118 4.03e-22 93.2
MsaG004760 MtrunA17_Chr8g0345691 40.602 133 71 5 11 140 28 155 1.31e-20 94.4
MsaG004760 MtrunA17_Chr7g0266701 37.500 128 71 3 26 144 37 164 2.65e-19 87.8
MsaG004760 MtrunA17_Chr8g0345711 32.432 148 82 5 11 142 28 173 2.93e-17 79.7
MsaG004760 MtrunA17_Chr8g0345731 34.146 123 76 3 3 121 33 154 1.61e-16 77.4
MsaG004760 MtrunA17_Chr8g0345721 32.432 148 69 4 10 127 51 197 2.46e-16 78.2
MsaG004760 MtrunA17_Chr8g0345701 36.434 129 61 6 11 122 23 147 8.61e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004760 AT1G71940.1 74.909 275 66 2 277 551 1 272 1.34e-150 433
MsaG004760 AT4G09580.1 73.171 287 65 2 277 551 1 287 1.46e-149 431
MsaG004760 AT1G71940.2 74.502 251 61 2 277 527 1 248 1.07e-134 394
MsaG004760 AT4G17790.1 60.163 246 98 0 303 548 18 263 3.21e-104 314
MsaG004760 AT1G71930.2 57.087 254 93 4 11 263 25 263 9.14e-93 287
MsaG004760 AT1G71930.1 57.087 254 93 4 11 263 25 263 9.14e-93 287
MsaG004760 AT4G36160.2 55.365 233 77 5 11 236 30 242 9.33e-79 253
MsaG004760 AT4G36160.1 55.365 233 77 5 11 236 26 238 1.05e-78 252
MsaG004760 AT4G36160.3 55.365 233 77 5 11 236 26 238 1.05e-78 252
MsaG004760 AT2G18060.3 54.185 227 89 4 11 236 25 237 3.37e-78 251
MsaG004760 AT2G18060.1 54.185 227 89 4 11 236 25 237 3.37e-78 251
MsaG004760 AT5G66300.1 51.724 232 91 5 11 236 28 244 1.72e-72 233
MsaG004760 AT1G12260.2 64.815 162 39 2 11 160 23 178 1.39e-71 233
MsaG004760 AT1G12260.1 64.815 162 39 2 11 160 23 178 3.22e-71 233
MsaG004760 AT1G62700.1 50.410 244 100 4 11 236 23 263 1.72e-70 231
MsaG004760 AT1G62700.2 50.410 244 100 4 11 236 23 263 1.72e-70 231
MsaG004760 AT5G62380.2 73.134 134 36 0 11 144 23 156 6.36e-68 223
MsaG004760 AT5G62380.1 73.134 134 36 0 11 144 23 156 6.36e-68 223
MsaG004760 AT2G46770.1 66.000 150 36 1 10 144 31 180 1.68e-63 212
MsaG004760 AT1G33280.1 70.149 134 39 1 11 144 24 156 2.03e-62 207
MsaG004760 AT1G32770.1 66.438 146 37 1 11 144 32 177 1.40e-60 204
MsaG004760 AT4G10350.1 66.423 137 44 1 10 144 24 160 1.45e-60 204
MsaG004760 AT3G61910.1 62.667 150 41 2 10 144 26 175 4.24e-59 199
MsaG004760 AT1G79580.3 68.148 135 41 2 11 144 33 166 1.63e-58 199
MsaG004760 AT1G79580.5 68.148 135 41 2 11 144 33 166 1.63e-58 199
MsaG004760 AT1G79580.4 68.148 135 41 2 11 144 33 166 1.63e-58 199
MsaG004760 AT1G79580.2 68.148 135 41 2 11 144 33 166 1.63e-58 199
MsaG004760 AT1G79580.1 68.148 135 41 2 11 144 33 166 1.63e-58 199
MsaG004760 AT3G17730.1 55.882 136 57 2 11 144 22 156 4.40e-47 165
MsaG004760 AT4G10350.2 68.224 107 32 1 40 144 7 113 7.34e-47 166
MsaG004760 AT1G56010.2 41.148 209 97 3 9 194 34 239 1.21e-46 166
MsaG004760 AT3G03200.1 53.020 149 60 3 11 150 22 169 1.11e-45 167
MsaG004760 AT3G18400.1 49.645 141 67 2 11 150 21 158 3.26e-45 162
MsaG004760 AT3G12977.1 53.901 141 58 4 9 146 33 169 1.27e-44 159
MsaG004760 AT5G17260.1 49.032 155 69 3 11 156 22 175 1.36e-44 164
MsaG004760 AT1G65910.1 51.408 142 66 2 11 150 22 162 1.20e-43 164
MsaG004760 AT4G27410.2 47.945 146 71 2 12 155 31 173 5.74e-43 155
MsaG004760 AT5G07680.2 51.449 138 60 3 11 144 19 153 6.01e-42 153
MsaG004760 AT5G07680.1 51.449 138 60 3 11 144 33 167 8.18e-42 153
MsaG004760 AT2G24430.2 51.825 137 60 3 11 144 32 165 1.03e-41 152
MsaG004760 AT2G24430.1 51.825 137 60 3 11 144 32 165 1.03e-41 152
MsaG004760 AT1G54330.1 55.147 136 55 3 11 144 22 153 1.52e-41 152
MsaG004760 AT5G61430.1 50.725 138 61 3 11 144 32 166 1.10e-40 150
MsaG004760 AT4G27410.3 45.000 160 72 4 12 155 31 190 6.53e-40 147
MsaG004760 AT5G39610.1 52.174 138 59 3 11 144 36 170 6.65e-40 147
MsaG004760 AT1G33060.1 50.685 146 67 3 11 153 40 183 9.88e-40 154
MsaG004760 AT1G33060.2 50.685 146 67 3 11 153 40 183 1.02e-39 154
MsaG004760 AT5G46590.1 52.174 138 61 3 11 144 22 158 1.17e-39 146
MsaG004760 AT1G56010.1 43.636 165 70 2 53 194 8 172 1.85e-39 145
MsaG004760 AT5G18270.1 50.000 146 63 5 8 148 36 176 2.12e-39 147
MsaG004760 AT5G04410.1 47.945 146 71 3 10 152 24 167 2.40e-39 151
MsaG004760 AT1G76420.1 52.555 137 59 3 11 144 38 171 2.46e-39 147
MsaG004760 AT1G69490.1 47.222 144 67 2 11 148 25 165 3.75e-39 144
MsaG004760 AT5G18270.2 49.315 146 64 5 8 148 36 176 5.05e-39 145
MsaG004760 AT3G04060.1 49.650 143 64 4 11 148 36 175 6.15e-39 145
MsaG004760 AT5G46590.2 57.895 114 46 2 10 122 21 133 1.39e-38 143
MsaG004760 AT1G52890.1 42.484 153 83 2 12 162 31 180 2.72e-38 143
MsaG004760 AT3G15500.1 44.444 144 75 2 12 153 31 171 2.86e-38 143
MsaG004760 AT3G10490.1 48.175 137 67 2 11 144 43 178 4.24e-38 140
MsaG004760 AT3G10480.1 49.635 137 65 2 11 144 43 178 8.71e-38 145
MsaG004760 AT4G17980.1 50.000 140 63 3 11 144 22 160 9.77e-38 140
MsaG004760 AT3G10500.1 45.517 145 76 2 10 152 24 167 1.29e-37 146
MsaG004760 AT3G04070.2 44.595 148 65 3 11 144 26 170 2.26e-37 141
MsaG004760 AT4G17980.2 50.000 140 63 3 11 144 22 160 2.45e-37 140
MsaG004760 AT5G53950.1 50.714 140 60 4 11 144 33 169 2.54e-37 142
MsaG004760 AT2G33480.2 46.617 133 65 1 12 144 32 158 4.41e-37 138
MsaG004760 AT2G33480.1 47.445 137 60 3 12 144 32 160 6.74e-37 138
MsaG004760 AT2G27300.1 48.120 133 62 3 11 143 30 155 6.93e-37 140
MsaG004760 AT3G29035.1 57.143 112 45 1 11 122 40 148 9.97e-37 139
MsaG004760 AT3G10490.2 48.175 137 67 2 11 144 43 178 1.34e-36 142
MsaG004760 AT1G61110.1 43.396 159 71 5 11 154 32 186 1.36e-36 139
MsaG004760 AT5G63790.2 45.775 142 66 3 10 144 75 212 1.49e-36 139
MsaG004760 AT2G18060.2 45.062 162 74 4 76 236 2 149 1.53e-36 137
MsaG004760 AT5G63790.1 45.775 142 66 3 10 144 65 202 1.72e-36 138
MsaG004760 AT3G12977.2 61.856 97 34 2 53 146 20 116 2.47e-36 135
MsaG004760 AT3G15170.1 48.529 136 61 4 11 140 36 168 2.82e-36 137
MsaG004760 AT4G35580.1 48.175 137 68 2 11 145 25 160 3.27e-36 142
MsaG004760 AT4G35580.3 48.175 137 68 2 11 145 25 160 4.51e-36 142
MsaG004760 AT4G35580.2 48.175 137 68 2 11 145 25 160 4.74e-36 141
MsaG004760 AT3G10480.2 49.635 137 64 3 11 144 43 177 5.35e-36 140
MsaG004760 AT4G28530.1 55.000 120 47 4 27 144 58 172 6.96e-36 137
MsaG004760 AT3G49530.2 47.826 138 68 3 10 144 28 164 1.73e-35 138
MsaG004760 AT1G77450.1 45.652 138 66 3 12 144 27 160 2.25e-35 133
MsaG004760 AT3G49530.1 47.826 138 68 3 10 144 28 164 2.64e-35 138
MsaG004760 AT5G24590.2 50.000 138 65 3 10 144 28 164 3.67e-35 137
MsaG004760 AT3G15510.1 44.295 149 65 4 11 144 33 178 4.25e-35 135
MsaG004760 AT5G08790.1 45.070 142 67 3 10 144 22 159 4.40e-35 133
MsaG004760 AT1G01720.1 42.384 151 77 3 11 155 23 169 2.22e-34 132
MsaG004760 AT3G10480.3 39.053 169 68 2 11 144 43 211 8.22e-34 135
MsaG004760 AT3G04070.1 39.634 164 66 3 11 144 26 186 9.21e-34 132
MsaG004760 AT5G61430.2 57.143 98 38 2 51 144 6 103 1.78e-33 129
MsaG004760 AT5G22290.1 44.615 130 66 2 11 140 37 160 1.78e-33 130
MsaG004760 AT1G32510.1 43.056 144 71 3 11 144 22 164 2.10e-33 129
MsaG004760 AT5G13180.1 49.275 138 57 5 12 144 31 160 3.75e-33 127
MsaG004760 AT3G44290.2 46.847 111 57 1 11 121 30 138 4.62e-33 126
MsaG004760 AT2G43000.1 43.750 144 75 3 11 151 34 174 7.15e-33 127
MsaG004760 AT5G39820.1 40.881 159 66 5 11 144 36 191 8.82e-33 129
MsaG004760 AT5G64060.1 39.634 164 86 5 10 162 21 182 1.02e-32 129
MsaG004760 AT5G09330.5 38.542 192 108 5 10 195 21 208 1.19e-32 131
MsaG004760 AT5G09330.2 38.542 192 108 5 10 195 21 208 1.19e-32 131
MsaG004760 AT5G09330.4 38.542 192 108 5 10 195 21 208 1.19e-32 131
MsaG004760 AT5G09330.3 38.542 192 108 5 10 195 21 208 1.19e-32 131
MsaG004760 AT5G09330.1 38.542 192 108 5 10 195 21 208 1.19e-32 131
MsaG004760 AT1G34180.3 34.518 197 120 4 11 205 32 221 3.03e-32 129
MsaG004760 AT1G34180.1 34.518 197 120 4 11 205 32 221 3.15e-32 131
MsaG004760 AT1G26870.1 40.816 147 71 3 11 144 32 175 3.28e-32 129
MsaG004760 AT3G44290.1 46.847 111 57 1 11 121 30 138 6.26e-32 126
MsaG004760 AT2G02450.1 40.690 145 76 4 11 151 67 205 1.42e-31 126
MsaG004760 AT1G34180.4 34.123 211 114 6 11 205 32 233 1.43e-31 127
MsaG004760 AT1G34180.2 34.123 211 114 6 11 205 32 233 1.75e-31 129
MsaG004760 AT2G02450.2 40.845 142 80 2 11 151 67 205 2.38e-31 126
MsaG004760 AT1G34190.1 39.157 166 91 5 11 171 32 192 6.67e-31 127
MsaG004760 AT1G52880.1 43.243 148 67 4 11 144 33 177 7.92e-31 122
MsaG004760 AT2G33480.3 51.923 104 43 3 51 149 8 109 2.38e-29 115
MsaG004760 AT2G17040.1 37.956 137 76 3 11 144 22 152 5.07e-27 110
MsaG004760 AT3G12910.1 33.871 248 106 14 11 209 37 275 3.72e-26 109
MsaG004760 AT5G04395.1 41.791 134 65 3 11 131 44 177 8.88e-26 104
MsaG004760 AT1G32870.3 39.041 146 82 3 11 152 62 204 1.08e-24 108
MsaG004760 AT1G32870.2 39.041 146 82 3 11 152 26 168 1.10e-24 108
MsaG004760 AT1G32870.1 39.041 146 82 3 11 152 26 168 1.21e-24 108
MsaG004760 AT3G44350.1 38.136 118 64 4 11 122 21 135 5.79e-20 87.4
MsaG004760 AT3G44350.2 38.136 118 64 4 11 122 21 135 1.98e-19 88.2
MsaG004760 AT5G22380.1 39.516 124 64 5 11 127 21 140 7.64e-19 86.3
MsaG004760 AT2G43000.2 44.444 99 52 2 60 155 2 100 9.23e-19 85.1
MsaG004760 AT3G10490.4 48.052 77 37 1 71 144 2 78 9.79e-19 88.2
MsaG004760 AT3G10490.3 48.052 77 37 1 71 144 2 78 9.79e-19 88.2
MsaG004760 AT4G28530.2 48.193 83 38 2 27 107 58 137 1.99e-16 80.9
MsaG004760 AT3G04420.2 40.816 98 53 2 26 121 36 130 4.21e-16 79.7
MsaG004760 AT4G01520.1 33.742 163 86 8 2 148 11 167 4.25e-16 79.7
MsaG004760 AT1G02230.1 41.667 120 61 6 25 141 35 148 5.35e-16 80.1
MsaG004760 AT4G01540.3 39.815 108 50 4 53 148 63 167 9.60e-16 80.1
MsaG004760 AT4G01540.4 33.987 153 82 6 10 148 20 167 1.01e-15 79.7
MsaG004760 AT4G01540.2 36.232 138 69 6 25 148 35 167 1.14e-15 79.7
MsaG004760 AT3G04420.1 40.816 98 53 2 26 121 36 130 1.23e-15 79.0
MsaG004760 AT4G01540.1 36.232 138 69 6 25 148 35 167 1.25e-15 80.1
MsaG004760 AT4G01550.1 37.121 132 73 6 54 181 63 188 3.73e-15 78.6
MsaG004760 AT5G22290.2 50.000 64 28 1 77 140 2 61 1.19e-14 74.3
MsaG004760 AT1G02250.1 35.115 131 75 5 14 141 25 148 1.46e-14 75.9
MsaG004760 AT5G64530.1 29.605 152 74 6 11 144 19 155 3.84e-14 71.6
MsaG004760 AT1G01010.1 31.081 148 84 7 4 140 12 152 1.06e-12 70.5
MsaG004760 AT1G02220.1 38.144 97 52 3 27 121 37 127 1.14e-12 70.5
MsaG004760 AT3G56530.1 25.210 119 87 1 27 145 86 202 4.41e-11 64.7

Find 116 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCCACTGCTGCTGGATTT+TGG 0.210425 1:+73561327 MsaT004760.1:CDS
CGATTTAGGTTTCTTGGAAC+TGG 0.214321 1:-73567970 None:intergenic
AATCCAGTGCAGTTTATTAT+TGG 0.228149 1:+73568311 MsaT004760.1:CDS
TGTCCATAACAAGAGTATTT+TGG 0.229615 1:-73562314 None:intergenic
ACCAGGCTGGGCTTGCTCTT+GGG 0.284432 1:+73571188 MsaT004760.1:intron
ATGCAGACATTTATGATTCC+TGG 0.306951 1:+73568356 MsaT004760.1:CDS
GCCAAATTGATGAAAAGATT+TGG 0.311077 1:-73569018 None:intergenic
AACCAGGCTGGGCTTGCTCT+TGG 0.318517 1:+73571187 MsaT004760.1:intron
TAGGATATTTCTTATCTTTG+TGG 0.324009 1:-73561286 None:intergenic
ATCCAGTGCAGTTTATTATT+GGG 0.326483 1:+73568312 MsaT004760.1:CDS
AGGTTAGCGGAGGTTGTTGC+AGG 0.354006 1:-73568086 None:intergenic
TTGATTGCAAAACTTGTTGT+TGG 0.357050 1:-73562372 None:intergenic
TAATATAAGAGGCTGGAATA+AGG 0.364793 1:-73569095 None:intergenic
CCAGGCTGGGCTTGCTCTTG+GGG 0.373822 1:+73571189 MsaT004760.1:intron
AAACCAAAATACTCTTGTTA+TGG 0.379475 1:+73562311 MsaT004760.1:CDS
TGAAAAGATTTGGCAATGTC+GGG 0.384747 1:-73569008 None:intergenic
GACCTATTGTTACTTGGTTG+TGG 0.395305 1:+73568501 MsaT004760.1:CDS
AAAATATCTGTAATTGATAA+AGG 0.402136 1:-73562201 None:intergenic
CTATTAGTTCTTGTTCCTGT+AGG 0.412771 1:-73561305 None:intergenic
CTTGTAGGTATTACCTCAAC+AGG 0.414274 1:+73560972 MsaT004760.1:CDS
AACTGCTGATCATTGCTAAA+GGG 0.419613 1:-73562282 None:intergenic
AATGACATGAAAATTGTTCC+AGG 0.423574 1:-73568374 None:intergenic
GTATAGAAACAAAACCAATA+AGG 0.436125 1:-73571264 None:intergenic
ACTAATAGAGCCACTGCTGC+TGG 0.441800 1:+73561320 MsaT004760.1:CDS
TGAAATGGTACATCAACAAT+TGG 0.442096 1:-73569045 None:intergenic
AAGAAGGATGGGTTGTGTGC+AGG 0.445621 1:+73562067 MsaT004760.1:CDS
CCAACAGAAGAAGAACTTGT+AGG 0.446022 1:+73560957 MsaT004760.1:CDS
AAAAGCCAAGTCCAAGTCAT+AGG 0.450680 1:+73562097 MsaT004760.1:CDS
AAGAATATTGCAGTGAAGAA+AGG 0.454802 1:+73562427 MsaT004760.1:CDS
CCTACAAGTTCTTCTTCTGT+TGG 0.461359 1:-73560957 None:intergenic
TTGGGAGACCTATTGTTACT+TGG 0.471284 1:+73568495 MsaT004760.1:CDS
CAGTTCCAAGAAACCTAAAT+CGG 0.472760 1:+73567971 MsaT004760.1:CDS
ATGAAAAGATTTGGCAATGT+CGG 0.478377 1:-73569009 None:intergenic
GAAGAAAACAGCGACGGCGA+CGG 0.478879 1:-73568024 None:intergenic
TACTCTGACAGTAATATAAG+AGG 0.480626 1:-73569106 None:intergenic
TCATAACCTGGCCTATGACT+TGG 0.481317 1:-73562108 None:intergenic
TTCCAGCTGTTCCATACCAC+CGG 0.482759 1:-73567937 None:intergenic
GATTTAGGTTTCTTGGAACT+GGG 0.484588 1:-73567969 None:intergenic
CTCCTCGGCGCCGCCATCGT+CGG 0.484948 1:-73567888 None:intergenic
AGCGGAGGTTGTTGCAGGCA+TGG 0.487462 1:-73568081 None:intergenic
TATTAATTACTGCAGGAAGA+AGG 0.489259 1:+73562051 MsaT004760.1:intron
CAAATGGAAGGAAAACTGAT+TGG 0.489271 1:+73561438 MsaT004760.1:CDS
AGAAGGCACAAACCTCAGAT+TGG 0.489618 1:-73568544 None:intergenic
TACAAGGGACGTGCCCCAAA+TGG 0.490347 1:+73561422 MsaT004760.1:CDS
AGAAGGATGGGTTGTGTGCA+GGG 0.492807 1:+73562068 MsaT004760.1:CDS
CTATACCATGGTTCATAACC+TGG 0.495957 1:-73562120 None:intergenic
AGACGAAGAAACCGGTGGTA+TGG 0.496417 1:+73567926 MsaT004760.1:CDS
AGAGGGTACGAGGCAATTTG+AGG 0.499553 1:-73568106 None:intergenic
GGTTGTGGCCTGAAAGGTTG+AGG 0.499807 1:+73568516 MsaT004760.1:CDS
AAACTGCTGATCATTGCTAA+AGG 0.500276 1:-73562283 None:intergenic
GGCGGCGCCGAGGAGCTTCA+CGG 0.503239 1:+73567896 MsaT004760.1:CDS
ATTGAACCATGGGACATTCA+AGG 0.504836 1:+73561052 MsaT004760.1:CDS
AACCGGTGGTATGGAACAGC+TGG 0.505049 1:+73567935 MsaT004760.1:CDS
GGCCACAACCAAGTAACAAT+AGG 0.507237 1:-73568503 None:intergenic
AAACTTGTACCTTCAGCTGC+AGG 0.517860 1:-73562252 None:intergenic
AATGCAGATAGATGCAAGCT+AGG 0.521793 1:+73561230 MsaT004760.1:intron
CCTGGCCTATGACTTGGACT+TGG 0.526558 1:-73562102 None:intergenic
TTACTTGGTTGTGGCCTGAA+AGG 0.528345 1:+73568510 MsaT004760.1:CDS
GTGAGTTAATCTTCCTGTTG+AGG 0.533745 1:-73560985 None:intergenic
GCGAATTCCCATGAATTGAG+TGG 0.534442 1:-73568002 None:intergenic
TACCCAATAATAAACTGCAC+TGG 0.537285 1:-73568314 None:intergenic
AAAATTCCCACTCAATTCAT+GGG 0.538935 1:+73567995 MsaT004760.1:CDS
AGAAGAGAGCGGTGGAGAAG+AGG 0.539998 1:-73568046 None:intergenic
AATTACTGCAGGAAGAAGGA+TGG 0.543175 1:+73562055 MsaT004760.1:intron
ACGAGGCAATTTGAGGTTAG+CGG 0.548764 1:-73568099 None:intergenic
CGTTTCCTCTTCAAAACTGT+CGG 0.554716 1:-73571289 None:intergenic
GTACTTGAGAGTGCGGAGAT+CGG 0.555261 1:-73568129 None:intergenic
TGCCGACGATGGCGGCGCCG+AGG 0.561614 1:+73567886 MsaT004760.1:CDS
AAAGATAAGAAATATCCTAC+AGG 0.562663 1:+73561290 MsaT004760.1:CDS
ATTACTGCAGGAAGAAGGAT+GGG 0.564101 1:+73562056 MsaT004760.1:intron
CTAAAATAACTTGCCTGTGG+AGG 0.564331 1:-73561500 None:intergenic
TGATTCAGATAGCAAAGCGT+AGG 0.565399 1:+73568947 MsaT004760.1:intron
TTCTGAACATGGTCCTCCAC+AGG 0.565416 1:+73561487 MsaT004760.1:CDS
CGGCGCCGCCATCGTCGGCA+CGG 0.566643 1:-73567883 None:intergenic
CTTCAAAATCCTGCAGCTGA+AGG 0.566846 1:+73562243 MsaT004760.1:CDS
AAAACAGAATAATAGGAATG+AGG 0.568492 1:+73561384 MsaT004760.1:CDS
GCGGTTAAAGACGAAGAAAC+CGG 0.569291 1:+73567918 MsaT004760.1:CDS
CTGACAGTAATATAAGAGGC+TGG 0.569381 1:-73569102 None:intergenic
CCAAGTCCAAGTCATAGGCC+AGG 0.570685 1:+73562102 MsaT004760.1:CDS
ATCTCTACAAAATTGAACCA+TGG 0.574175 1:+73561041 MsaT004760.1:CDS
TTTAGGTTTCTTGGAACTGG+GGG 0.577659 1:-73567967 None:intergenic
TCTCTACAAAATTGAACCAT+GGG 0.577975 1:+73561042 MsaT004760.1:CDS
AGCATTAATAATAATAACAA+TGG 0.580251 1:+73562450 MsaT004760.1:CDS
CGAATTCCCATGAATTGAGT+GGG 0.589662 1:-73568001 None:intergenic
TTAACCGCCGTGAAGCTCCT+CGG 0.591204 1:-73567903 None:intergenic
CGGATCCACCGTGCCGACGA+TGG 0.596735 1:+73567875 MsaT004760.1:CDS
TGATCTAGATGTTATTGTTG+AGG 0.597687 1:+73561015 MsaT004760.1:CDS
ACTGCTGATCATTGCTAAAG+GGG 0.599874 1:-73562281 None:intergenic
AGGGACGTGCCCCAAATGGA+AGG 0.600104 1:+73561426 MsaT004760.1:CDS
TTTCCAAAATCCAGCAGCAG+TGG 0.602768 1:-73561330 None:intergenic
ATCCACCGTGCCGACGATGG+CGG 0.603822 1:+73567878 MsaT004760.1:CDS
AATGTACCTTGAATGTCCCA+TGG 0.604436 1:-73561058 None:intergenic
GAGAGTGCGGAGATCGGAGA+GGG 0.612883 1:-73568123 None:intergenic
TGTTGTTGATTACTATACCA+TGG 0.613974 1:-73562132 None:intergenic
AGTTGTTAGAGGAATAATGT+TGG 0.617640 1:+73568418 MsaT004760.1:CDS
GATTCAGATAGCAAAGCGTA+GGG 0.618603 1:+73568948 MsaT004760.1:intron
CGCCGCCATCGTCGGCACGG+TGG 0.619912 1:-73567880 None:intergenic
TTTCATGTCATTGTTAGCTG+GGG 0.621101 1:+73568385 MsaT004760.1:CDS
AAAGAAAATACTCATCACAA+TGG 0.626769 1:+73562393 MsaT004760.1:CDS
CGGAGATCGGAGAGGGTACG+AGG 0.628284 1:-73568116 None:intergenic
ATTTAGGTTTCTTGGAACTG+GGG 0.631300 1:-73567968 None:intergenic
AGGTTGTTGCAGGCATGGTG+AGG 0.632376 1:-73568076 None:intergenic
TGGGGATCTAAAGTCAGTGA+AGG 0.639572 1:+73571207 MsaT004760.1:CDS
GAAAAGATTTGGCAATGTCG+GGG 0.640080 1:-73569007 None:intergenic
GATATGAGCAACAGAATGAG+TGG 0.640331 1:+73561252 MsaT004760.1:CDS
GTAAATGCAGAAGAGAGCGG+TGG 0.641147 1:-73568054 None:intergenic
GAAGAGGAAGAAAACAGCGA+CGG 0.644066 1:-73568030 None:intergenic
AGACATCAAACTTCTGAACA+TGG 0.653088 1:+73561476 MsaT004760.1:CDS
AGGCAATTTGAGGTTAGCGG+AGG 0.658433 1:-73568096 None:intergenic
ATAGGCCAGGTTATGAACCA+TGG 0.676021 1:+73562115 MsaT004760.1:CDS
GAGGTAAATGCAGAAGAGAG+CGG 0.680764 1:-73568057 None:intergenic
TGAGAGTGCGGAGATCGGAG+AGG 0.695563 1:-73568124 None:intergenic
GTTGTTGGACTATCTAACTG+TGG 0.697760 1:-73562357 None:intergenic
GGCGCCGAGGAGCTTCACGG+CGG 0.730699 1:+73567899 MsaT004760.1:CDS
TCATCTGATCTGAAATACTG+TGG 0.737110 1:-73562156 None:intergenic
GTTAAAGACGAAGAAACCGG+TGG 0.766263 1:+73567921 MsaT004760.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 73560950 73571324 73560950 ID=MsaG004760
Chr1 mRNA 73560950 73571324 73560950 ID=MsaT004760.1;Parent=MsaG004760
Chr1 exon 73560950 73561073 73560950 ID=MsaT004760.1.exon1;Parent=MsaT004760.1
Chr1 CDS 73560950 73561073 73560950 ID=cds.MsaT004760.1;Parent=MsaT004760.1
Chr1 exon 73561237 73561508 73561237 ID=MsaT004760.1.exon2;Parent=MsaT004760.1
Chr1 CDS 73561237 73561508 73561237 ID=cds.MsaT004760.1;Parent=MsaT004760.1
Chr1 exon 73562066 73562476 73562066 ID=MsaT004760.1.exon3;Parent=MsaT004760.1
Chr1 CDS 73562066 73562476 73562066 ID=cds.MsaT004760.1;Parent=MsaT004760.1
Chr1 exon 73567873 73568147 73567873 ID=MsaT004760.1.exon4;Parent=MsaT004760.1
Chr1 CDS 73567873 73568147 73567873 ID=cds.MsaT004760.1;Parent=MsaT004760.1
Chr1 exon 73568283 73568553 73568283 ID=MsaT004760.1.exon5;Parent=MsaT004760.1
Chr1 CDS 73568283 73568553 73568283 ID=cds.MsaT004760.1;Parent=MsaT004760.1
Chr1 exon 73568955 73569125 73568955 ID=MsaT004760.1.exon6;Parent=MsaT004760.1
Chr1 CDS 73568955 73569125 73568955 ID=cds.MsaT004760.1;Parent=MsaT004760.1
Chr1 exon 73571193 73571324 73571193 ID=MsaT004760.1.exon7;Parent=MsaT004760.1
Chr1 CDS 73571193 73571324 73571193 ID=cds.MsaT004760.1;Parent=MsaT004760.1
Gene Sequence

>MsaT004760.1

ATTTCATCCAACAGAAGAAGAACTTGTAGGTATTACCTCAACAGGAAGATTAACTCACTCAAAATTGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGACATTCAAGATAGATGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCACAAAGATAAGAAATATCCTACAGGAACAAGAACTAATAGAGCCACTGCTGCTGGATTTTGGAAAGCTACTGGAAGGGATAAAGCTGTGACTTCCAAAAACAGAATAATAGGAATGAGGAAGACACTTGTCTTTTACAAGGGACGTGCCCCAAATGGAAGGAAAACTGATTGGATCATGCATGAATATAGACATCAAACTTCTGAACATGGTCCTCCACAGGAAGAAGGATGGGTTGTGTGCAGGGCATTTAAAAAGCCAAGTCCAAGTCATAGGCCAGGTTATGAACCATGGTATAGTAATCAACAACAACCACAGTATTTCAGATCAGATGATCAAAGCTATGCAACTACAAGACCTTTATCAATTACAGATATTTTGCATGAAAATCGTTTACTCCTTCAAAATCCTGCAGCTGAAGGTACAAGTTTTAGTCACCCCTTTAGCAATGATCAGCAGTTTCTATCAAACCAAAATACTCTTGTTATGGACAATAAACAACTCATTGAACTACCACAGTTAGATAGTCCAACAACAAGTTTTGCAATCAAAGAAAATACTCATCACAATGGACTCACAATAGAAGAATATTGCAGTGAAGAAAGGAGCATTAATAATAATAACAATGGACAAATCGGATCCACCGTGCCGACGATGGCGGCGCCGAGGAGCTTCACGGCGGTTAAAGACGAAGAAACCGGTGGTATGGAACAGCTGGAAGACGATTCCCCCAGTTCCAAGAAACCTAAATCGGAAAAATTCCCACTCAATTCATGGGAATTCGCCGTCGCCGTCGCTGTTTTCTTCCTCTTCTCCACCGCTCTCTTCTGCATTTACCTCACCATGCCTGCAACAACCTCCGCTAACCTCAAATTGCCTCGTACCCTCTCCGATCTCCGCACTCTCAAGGATCAATTTTCGACGTATGCGAATGAGAATCCAGTGCAGTTTATTATTGGGTATTGTTCAACGTATATTTTTATGCAGACATTTATGATTCCTGGAACAATTTTCATGTCATTGTTAGCTGGGGCACTTTTTGGAGTTGTTAGAGGAATAATGTTGGTTGTTTTCAATGCTACTGCTGGAGCTTCTTCGTGTTTCTTTTTGTCTAAGTTAATTGGGAGACCTATTGTTACTTGGTTGTGGCCTGAAAGGTTGAGGTTTTTCCAATCTGAGATAGCAAAGCGTAGGGATAAGCTGTTGAATTACATGCTTTTTCTGAGGATAACCCCGACATTGCCAAATCTTTTCATCAATTTGGCATCTCCAATTGTTGATGTACCATTTCATATATTCTTTTTCGCAACATTGATTGGCCTTATTCCAGCCTCTTATATTACTGTCAGAGCTGGGCTTGCTCTTGGGGATCTAAAGTCAGTGAAGGATCTATATGATTTCAAGACATTATCAGTGCTTTTCCTTATTGGTTTTGTTTCTATACTTCCGACAGTTTTGAAGAGGAAACGAGTATATGAATGA

Protein sequence

>MsaT004760.1

ISSNRRRTCRYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFKKPSPSHRPGYEPWYSNQQQPQYFRSDDQSYATTRPLSITDILHENRLLLQNPAAEGTSFSHPFSNDQQFLSNQNTLVMDNKQLIELPQLDSPTTSFAIKENTHHNGLTIEEYCSEERSINNNNNGQIGSTVPTMAAPRSFTAVKDEETGGMEQLEDDSPSSKKPKSEKFPLNSWEFAVAVAVFFLFSTALFCIYLTMPATTSANLKLPRTLSDLRTLKDQFSTYANENPVQFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVVRGIMLVVFNATAGASSCFFLSKLIGRPIVTWLWPERLRFFQSEIAKRRDKLLNYMLFLRITPTLPNLFINLASPIVDVPFHIFFFATLIGLIPASYITVRAGLALGDLKSVKDLYDFKTLSVLFLIGFVSILPTVLKRKRVYE*