AlfalfaGEDB | MsaG004762

M. sativa ssp. caerulea / MsaG004762

KEGG: K13412
GO: GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032879 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080092 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004762	XP_013469524.1	98.798	499	2	1	1	495	1	499	0.0	1019

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004762	sp\|Q39016\|CDPKB_ARATH	82.025	484	85	1	12	495	12	493	0.0	842

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004762	tr\|A0A072VP17\|A0A072VP17_MEDTR	98.798	499	2	1	1	495	1	499	0.0	1019

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG004762	MtrunA17_Chr1g0200601	98.798	499	2	1	1	495	1	499	1019
MsaG004762	MtrunA17_Chr8g0385341	76.250	480	110	3	11	490	15	490	783
MsaG004762	MtrunA17_Chr3g0131181	76.310	477	109	3	14	490	17	489	774
MsaG004762	MtrunA17_Chr1g0170281	71.639	476	130	2	10	484	102	573	716
MsaG004762	MtrunA17_Chr5g0448721	68.565	474	147	2	14	487	84	555	694
MsaG004762	MtrunA17_Chr1g0176751	69.118	476	145	1	10	485	108	581	690
MsaG004762	MtrunA17_Chr1g0176421	66.461	486	131	1	13	466	148	633	672
MsaG004762	MtrunA17_Chr7g0267751	64.496	476	167	1	10	485	119	592	647
MsaG004762	MtrunA17_Chr8g0387671	63.656	454	164	1	22	474	62	515	609
MsaG004762	MtrunA17_Chr5g0441691	61.489	470	177	2	9	474	48	517	608

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG004762	AT1G35670.1	82.025	484	85	1	12	495	12	493	842
MsaG004762	AT4G09570.1	81.198	484	89	1	12	495	11	492	837
MsaG004762	AT5G23580.1	75.831	451	109	0	14	464	10	460	737
MsaG004762	AT5G04870.1	70.753	465	136	0	1	465	125	589	711
MsaG004762	AT3G10660.2	69.892	465	140	0	1	465	161	625	707
MsaG004762	AT3G10660.1	69.892	465	140	0	1	465	161	625	707
MsaG004762	AT4G35310.2	68.354	474	148	2	14	487	85	556	691
MsaG004762	AT4G35310.1	68.354	474	148	2	14	487	85	556	691
MsaG004762	AT2G38910.1	69.762	463	140	0	1	463	109	571	687
MsaG004762	AT4G38230.4	67.568	481	152	2	3	483	2	478	687

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Find 105 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCAGAATCCAAAGGC+TGG	0.561995	1:+73578341	None:intergenic
AAACTTGGACAAGGACAATT+TGG	0.215539	1:-73580271	MsaT004762.1:CDS
AAAGGTGACGATGATCAGGT+TGG	0.654074	1:-73577469	MsaT004762.1:CDS
AACAGTGGAACAATAGACTA+TGG	0.461109	1:-73577910	MsaT004762.1:CDS
AACTCAGGAGCAATATAGTA+GGG	0.566045	1:+73578891	None:intergenic
AACTTGGACAAGGACAATTT+GGG	0.452699	1:-73580270	MsaT004762.1:CDS
AAGGATGGTCTAAAACAAGT+GGG	0.648518	1:-73578071	MsaT004762.1:CDS
AAGTTGATGAAGACAATTGT+CGG	0.586230	1:-73579977	MsaT004762.1:CDS
AATAACTTATGAGGAACTCA+AGG	0.575259	1:-73578090	MsaT004762.1:CDS
AATCGATTATGGAGAGTTTG+TGG	0.502319	1:-73577503	MsaT004762.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	73577393	73580383	73577393	ID=MsaG004762
Chr1	mRNA	73577393	73580383	73577393	ID=MsaT004762.1;Parent=MsaG004762
Chr1	exon	73577393	73577533	73577393	ID=MsaT004762.1.exon7;Parent=MsaT004762.1
Chr1	CDS	73577393	73577533	73577393	ID=cds.MsaT004762.1;Parent=MsaT004762.1
Chr1	exon	73577720	73577944	73577720	ID=MsaT004762.1.exon6;Parent=MsaT004762.1
Chr1	CDS	73577720	73577944	73577720	ID=cds.MsaT004762.1;Parent=MsaT004762.1
Chr1	exon	73578028	73578195	73578028	ID=MsaT004762.1.exon5;Parent=MsaT004762.1
Chr1	CDS	73578028	73578195	73578028	ID=cds.MsaT004762.1;Parent=MsaT004762.1
Chr1	exon	73578285	73578400	73578285	ID=MsaT004762.1.exon4;Parent=MsaT004762.1
Chr1	CDS	73578285	73578400	73578285	ID=cds.MsaT004762.1;Parent=MsaT004762.1
Chr1	exon	73578511	73578663	73578511	ID=MsaT004762.1.exon3;Parent=MsaT004762.1
Chr1	CDS	73578511	73578663	73578511	ID=cds.MsaT004762.1;Parent=MsaT004762.1
Chr1	exon	73578799	73578942	73578799	ID=MsaT004762.1.exon2;Parent=MsaT004762.1
Chr1	CDS	73578799	73578942	73578799	ID=cds.MsaT004762.1;Parent=MsaT004762.1
Chr1	exon	73579843	73580383	73579843	ID=MsaT004762.1.exon1;Parent=MsaT004762.1
Chr1	CDS	73579843	73580383	73579843	ID=cds.MsaT004762.1;Parent=MsaT004762.1

Gene Sequence

>MsaT004762.1

ATGCAGAAACATAATTTAGGATCATCAAAATGCACTGCTGTGTTACCCTATCAAACACCAAGATTAAGGGATCATTACCTTCTTGGGAAGAAACTTGGACAAGGACAATTTGGGACAACATATCTATGCACACACAAATCCACAGGGAAACTCTATGCATGCAAATCAATCCCTAAGAGGAAGCTTTTGTGTAAGGAGGATTATGATGATGTGTGGAGAGAGATTCAGATCATGCACCATTTATCTGAACATCCAAATGTGGTTCAGATACAAGGAACCTATGAGGATTCTGTGTTTGTGCATTTGGTGATGGAGCTGTGTGCTGGTGGTGAACTTTTTGATAAGATCATTCAAAAGGGTCATTATAGTGAGAAAGAGGCTGCAAAGTTGATGAAGACAATTGTCGGTGTCGTTGAGACTTGTCATTCTCTTGGTGTCATGCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCTGAAATGAAGGCAACAGATTTTGGTCTCTCTGTGTTCTACAAGCCAGGACAAACCTTTCACGACGTAGTTGGAAGTCCCTACTATATTGCTCCTGAGTTATTGTGTAAGATATATGGACCACAAGTTGATGTTTGGAGTGCTGGTGTTATCTTATACATCTTATTGAGCGGTGTTCCACCTTTTTGGGCTGAAACCGAATCAGGAATTTTTAGACAGATTTTACATGGAGATCTTGATTTTGAATCGGAACCATGGCCAACGATCTCAGAAAGTGCTAAAGATTTGGTAAAAAAGATGTTGGAGAGGGACCCTAAGAAAAGAATCTCTGCTCATGAAGTCTTATGTCATCCTTGGATTCTTGATGATACCGTTGCACCTGACCAGCCTTTGGATTCTGCTGTTTTGACACGTCTAAAACATTTCTCGGCGATGAATAAACTTAAGAAGATGGCATTACGCGTCATAGCGGAAAGACTATCAGAGGAAGAAATAGGCGGGTTAAAAGAGTTATTCAAAATGATTGACACCGACAACAGTGGGACAATAACTTATGAGGAACTCAAGGATGGTCTAAAACAAGTGGGCTCTAATCTCATGGAATCCGAGATTAAATCCCTTATGGAGTCGGCTGATATAGACAACAGTGGAACAATAGACTATGGTGAATTTCTCGCGGCTACACTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCAGCTTTTGCCTATTTTGACAAAGACGGTAGCGGTTACATCACCATTGACGAGCTTCAACAAGCTTGCAAAGACTTTGGCCTCGGTGAAGTACATCTGGATGACATGATCAAAGAGATTGATCAAGATAATGATGGGAGAATCGATTATGGAGAGTTTGTGGCGATGATGAAAAAAGGTGACGATGATCAGGTTGGTAGGAGCAGAACCAAGAAAGGGAATATAAACTTCAATATTGCAGATGCATTTGGAGTGAAAGAAGAATCTTCTTGA

Protein sequence

>MsaT004762.1

MQKHNLGSSKCTAVLPYQTPRLRDHYLLGKKLGQGQFGTTYLCTHKSTGKLYACKSIPKRKLLCKEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDKIIQKGHYSEKEAAKLMKTIVGVVETCHSLGVMHRDLKPENFLFDTPGEDAEMKATDFGLSVFYKPGQTFHDVVGSPYYIAPELLCKIYGPQVDVWSAGVILYILLSGVPPFWAETESGIFRQILHGDLDFESEPWPTISESAKDLVKKMLERDPKKRISAHEVLCHPWILDDTVAPDQPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITYEELKDGLKQVGSNLMESEIKSLMESADIDNSGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIDELQQACKDFGLGEVHLDDMIKEIDQDNDGRIDYGEFVAMMKKGDDDQVGRSRTKKGNINFNIADAFGVKEESS*