Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004791 | KEH43631.1 | 69.277 | 166 | 42 | 3 | 1 | 158 | 156 | 320 | 2.41e-60 | 210 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004791 | sp|Q7XIT1|IRE1_ORYSJ | 40.517 | 232 | 114 | 7 | 185 | 404 | 550 | 769 | 4.29e-37 | 148 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004791 | tr|A0A072VPN4|A0A072VPN4_MEDTR | 69.277 | 166 | 42 | 3 | 1 | 158 | 156 | 320 | 1.15e-60 | 210 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG004791 | MsaG010051 | 0.800571 | 2.264433e-48 | 3.101482e-46 |
MsaG004791 | MsaG011459 | 0.802357 | 9.791036e-49 | 1.396487e-46 |
MsaG004791 | MsaG017348 | 0.805470 | 2.222977e-49 | 3.407104e-47 |
MsaG004791 | MsaG018355 | 0.803762 | 5.030861e-49 | 7.411276e-47 |
MsaG004791 | MsaG022048 | 0.817180 | 6.555976e-52 | 1.339815e-49 |
MsaG004791 | MsaG026674 | 0.802764 | 8.077083e-49 | 1.162758e-46 |
MsaG004791 | MsaG035296 | 0.801287 | 1.620226e-48 | 2.255197e-46 |
MsaG004791 | MsaG035496 | 0.811833 | 9.862293e-51 | 1.761420e-48 |
MsaG004791 | MsaG043499 | 0.805504 | 2.187160e-49 | 3.354828e-47 |
MsaG004791 | MsaG004542 | 0.809650 | 2.910055e-50 | 4.927731e-48 |
MsaG004791 | MsaG043192 | 0.895344 | 2.358570e-75 | 9.253315e-72 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004791 | MtrunA17_Chr1g0201211 | 69.375 | 160 | 38 | 3 | 1 | 158 | 156 | 306 | 1.71e-62 | 205 |
MsaG004791 | MtrunA17_Chr1g0200771 | 73.276 | 116 | 24 | 2 | 49 | 158 | 1 | 115 | 1.69e-49 | 164 |
MsaG004791 | MtrunA17_Chr5g0407261 | 38.889 | 288 | 136 | 9 | 185 | 443 | 541 | 817 | 6.31e-42 | 159 |
MsaG004791 | MtrunA17_Chr8g0370241 | 40.977 | 266 | 117 | 8 | 170 | 404 | 465 | 721 | 9.73e-42 | 158 |
MsaG004791 | MtrunA17_Chr8g0369971 | 43.000 | 200 | 99 | 6 | 185 | 382 | 429 | 615 | 4.39e-33 | 132 |
MsaG004791 | MtrunA17_Chr2g0326531 | 32.099 | 162 | 97 | 5 | 234 | 393 | 229 | 379 | 2.00e-14 | 74.7 |
MsaG004791 | MtrunA17_Chr5g0424581 | 30.698 | 215 | 108 | 10 | 194 | 393 | 189 | 377 | 5.84e-12 | 67.4 |
MsaG004791 | MtrunA17_Chr3g0132671 | 30.000 | 160 | 94 | 5 | 239 | 394 | 156 | 301 | 6.08e-12 | 67.8 |
MsaG004791 | MtrunA17_Chr4g0001331 | 29.534 | 193 | 98 | 7 | 234 | 413 | 121 | 288 | 6.44e-12 | 67.4 |
MsaG004791 | MtrunA17_Chr3g0107011 | 28.910 | 211 | 122 | 9 | 192 | 394 | 78 | 268 | 1.03e-11 | 66.6 |
MsaG004791 | MtrunA17_Chr3g0114511 | 29.375 | 160 | 98 | 6 | 239 | 394 | 136 | 284 | 1.27e-11 | 66.2 |
MsaG004791 | MtrunA17_Chr5g0402091 | 28.571 | 224 | 136 | 9 | 180 | 393 | 55 | 264 | 1.82e-11 | 65.5 |
MsaG004791 | MtrunA17_Chr5g0428031 | 33.136 | 169 | 84 | 9 | 239 | 397 | 116 | 265 | 2.29e-11 | 65.5 |
MsaG004791 | MtrunA17_Chr5g0424531 | 31.220 | 205 | 120 | 9 | 194 | 393 | 80 | 268 | 3.09e-11 | 63.9 |
MsaG004791 | MtrunA17_Chr5g0424651 | 29.902 | 204 | 124 | 8 | 194 | 393 | 385 | 573 | 3.47e-11 | 65.5 |
MsaG004791 | MtrunA17_Chr1g0203881 | 28.114 | 281 | 158 | 14 | 122 | 391 | 49 | 296 | 5.30e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004791 | AT2G17520.1 | 35.640 | 289 | 146 | 8 | 185 | 442 | 473 | 752 | 4.93e-38 | 147 |
MsaG004791 | AT5G24360.2 | 37.333 | 225 | 122 | 7 | 226 | 442 | 585 | 798 | 5.28e-33 | 133 |
MsaG004791 | AT5G24360.3 | 37.333 | 225 | 122 | 7 | 226 | 442 | 565 | 778 | 6.30e-33 | 132 |
MsaG004791 | AT5G24360.1 | 37.333 | 225 | 122 | 7 | 226 | 442 | 579 | 792 | 6.44e-33 | 132 |
MsaG004791 | AT3G11870.1 | 37.968 | 187 | 100 | 8 | 226 | 404 | 240 | 418 | 1.42e-21 | 97.8 |
MsaG004791 | AT5G01810.3 | 30.460 | 174 | 88 | 7 | 234 | 394 | 113 | 266 | 2.19e-13 | 72.0 |
MsaG004791 | AT5G01810.1 | 30.460 | 174 | 88 | 7 | 234 | 394 | 113 | 266 | 2.85e-13 | 72.0 |
MsaG004791 | AT5G01810.2 | 30.460 | 174 | 88 | 7 | 234 | 394 | 113 | 266 | 2.85e-13 | 72.0 |
MsaG004791 | AT3G45240.2 | 30.636 | 173 | 101 | 7 | 226 | 391 | 206 | 366 | 3.30e-12 | 68.6 |
MsaG004791 | AT3G45240.1 | 30.636 | 173 | 101 | 7 | 226 | 391 | 206 | 366 | 3.30e-12 | 68.6 |
MsaG004791 | AT1G12580.1 | 33.537 | 164 | 90 | 9 | 235 | 391 | 148 | 299 | 2.26e-11 | 66.2 |
MsaG004791 | AT5G39440.1 | 32.298 | 161 | 96 | 6 | 235 | 394 | 122 | 270 | 2.43e-11 | 66.2 |
MsaG004791 | AT1G29230.1 | 25.778 | 225 | 129 | 8 | 192 | 403 | 138 | 337 | 2.93e-11 | 65.9 |
MsaG004791 | AT1G53165.2 | 27.962 | 211 | 131 | 8 | 193 | 399 | 79 | 272 | 4.62e-11 | 65.5 |
MsaG004791 | AT1G53165.3 | 27.962 | 211 | 131 | 8 | 193 | 399 | 79 | 272 | 4.76e-11 | 65.5 |
MsaG004791 | AT1G53165.1 | 27.962 | 211 | 131 | 8 | 193 | 399 | 79 | 272 | 5.88e-11 | 65.1 |
MsaG004791 | AT2G35890.2 | 32.370 | 173 | 101 | 7 | 229 | 397 | 233 | 393 | 6.05e-11 | 65.1 |
MsaG004791 | AT2G35890.1 | 32.370 | 173 | 101 | 7 | 229 | 397 | 233 | 393 | 6.05e-11 | 65.1 |
MsaG004791 | AT5G40440.6 | 30.198 | 202 | 104 | 10 | 229 | 416 | 166 | 344 | 7.37e-11 | 64.7 |
MsaG004791 | AT5G40440.3 | 30.198 | 202 | 104 | 10 | 229 | 416 | 166 | 344 | 7.37e-11 | 64.7 |
MsaG004791 | AT5G40440.2 | 30.198 | 202 | 104 | 10 | 229 | 416 | 166 | 344 | 7.37e-11 | 64.7 |
MsaG004791 | AT2G45490.1 | 33.974 | 156 | 86 | 9 | 239 | 391 | 129 | 270 | 7.89e-11 | 63.2 |
MsaG004791 | AT5G40440.5 | 30.198 | 202 | 104 | 10 | 229 | 416 | 102 | 280 | 8.88e-11 | 64.3 |
MsaG004791 | AT2G25090.1 | 28.488 | 172 | 101 | 7 | 228 | 388 | 112 | 272 | 8.92e-11 | 64.3 |
Find 103 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTTACCATTACTTGTTAA+AGG | 0.206476 | 1:-74027296 | MsaT004791.1:CDS |
GGTCATCAAGATCTCGGATA+TGG | 0.283671 | 1:-74028710 | MsaT004791.1:CDS |
GCGATCCCCAGAGCAGATTA+AGG | 0.292814 | 1:-74027812 | MsaT004791.1:CDS |
TCTGTTGTTCAAATAATTTC+CGG | 0.295999 | 1:+74027324 | None:intergenic |
CTTGACAGATTTCTGTTTGT+TGG | 0.302379 | 1:-74030107 | MsaT004791.1:CDS |
AGCTGATACTCCCAGCTCTT+TGG | 0.316258 | 1:-74030141 | MsaT004791.1:CDS |
GTTCCTCCCTTAATCTGCTC+TGG | 0.327065 | 1:+74027805 | None:intergenic |
CATTACTTGTTAAAGGAAAC+TGG | 0.330094 | 1:-74027289 | MsaT004791.1:CDS |
CCGTCTGATATCTTTAGCTT+GGG | 0.337290 | 1:-74027769 | MsaT004791.1:CDS |
AGATATCAGACGGATAACTA+TGG | 0.344947 | 1:+74027779 | None:intergenic |
ATGGATCTCATGTTACTTGA+TGG | 0.368910 | 1:-74027658 | MsaT004791.1:CDS |
ACCAAGGGCCACCATCCATT+TGG | 0.370338 | 1:-74027724 | MsaT004791.1:CDS |
TTCCTCCCTTAATCTGCTCT+GGG | 0.373672 | 1:+74027806 | None:intergenic |
TCATGTTACTTGATGGCTTA+GGG | 0.375395 | 1:-74027651 | MsaT004791.1:CDS |
TATTTGAACAACAGACTTGC+TGG | 0.384296 | 1:-74027316 | MsaT004791.1:CDS |
CTCTTATGCATTCATGACTT+TGG | 0.384634 | 1:-74030180 | None:intergenic |
TCCGTCTGATATCTTTAGCT+TGG | 0.390459 | 1:-74027770 | MsaT004791.1:CDS |
CTCATGTTACTTGATGGCTT+AGG | 0.399684 | 1:-74027652 | MsaT004791.1:CDS |
GATTTGTGGATTAAGATTAC+CGG | 0.414730 | 1:-74028966 | MsaT004791.1:CDS |
GGAAAGATGATGAGGCTACT+TGG | 0.425652 | 1:-74029743 | MsaT004791.1:CDS |
TGAGTTCATCGAAACAGAAA+AGG | 0.431827 | 1:-74029005 | MsaT004791.1:CDS |
TTTGTGGTTTCGGATCTCTA+TGG | 0.436360 | 1:+74028782 | None:intergenic |
CAGTTTCCTTTAACAAGTAA+TGG | 0.437225 | 1:+74027290 | None:intergenic |
TGAAAGCTGCTAGGAAAGAA+TGG | 0.439565 | 1:-74029824 | MsaT004791.1:CDS |
CAACTGTTGTTGTACAAAGA+TGG | 0.441652 | 1:-74029911 | MsaT004791.1:CDS |
AGATCGGATCTTAAAACTAT+AGG | 0.445449 | 1:-74029293 | MsaT004791.1:CDS |
TTCAATATTGAACAATAAGA+TGG | 0.452974 | 1:-74027677 | MsaT004791.1:CDS |
TGCTCTGGGGATCGCCAACC+CGG | 0.458871 | 1:+74027820 | None:intergenic |
GATATATATATCCAAAGAGC+TGG | 0.467789 | 1:+74030130 | None:intergenic |
AACAATGGGAATGGTACTCT+TGG | 0.470478 | 1:-74028664 | MsaT004791.1:intron |
CGATCCCCAGAGCAGATTAA+GGG | 0.475727 | 1:-74027811 | MsaT004791.1:CDS |
TGAGGAAGGAAGTTACTGTA+GGG | 0.476823 | 1:-74027244 | MsaT004791.1:CDS |
TTTACCTCTGAGATGGGTCC+GGG | 0.480588 | 1:+74027596 | None:intergenic |
ACTTATTTCCAGGCTGGTGG+CGG | 0.483692 | 1:-74027447 | MsaT004791.1:intron |
GAGTTCATCGAAACAGAAAA+GGG | 0.483775 | 1:-74029004 | MsaT004791.1:CDS |
AGGTCGTTCTTCAGAACAAT+GGG | 0.486817 | 1:-74028678 | MsaT004791.1:CDS |
GAAAGTTACATGGAGATTTG+AGG | 0.486850 | 1:-74027262 | MsaT004791.1:CDS |
CCCAACACCTTTCAGTTGCA+AGG | 0.487759 | 1:+74029038 | None:intergenic |
AGCTGAGCAGCATAACTCAT+TGG | 0.494981 | 1:-74028731 | MsaT004791.1:CDS |
GTCATCAAGATCTCGGATAT+GGG | 0.497481 | 1:-74028709 | MsaT004791.1:CDS |
TCCAAATGGATGGTGGCCCT+TGG | 0.498824 | 1:+74027723 | None:intergenic |
TTGAGGAAGGAAGTTACTGT+AGG | 0.501085 | 1:-74027245 | MsaT004791.1:CDS |
GAAAGATGATGAGGCTACTT+GGG | 0.502305 | 1:-74029742 | MsaT004791.1:CDS |
CTCATTGGTCATCAAGATCT+CGG | 0.502816 | 1:-74028716 | MsaT004791.1:CDS |
GAAAGCTGCTAGGAAAGAAT+GGG | 0.505632 | 1:-74029823 | MsaT004791.1:CDS |
GATATCAGACGGATAACTAT+GGG | 0.506588 | 1:+74027780 | None:intergenic |
AACTGTTGTTGTACAAAGAT+GGG | 0.507933 | 1:-74029910 | MsaT004791.1:CDS |
GCGGTGCTGAATTTGATTTG+TGG | 0.511467 | 1:-74028980 | MsaT004791.1:CDS |
ATTGCAGATACAGGCACTCC+GGG | 0.513292 | 1:-74027838 | MsaT004791.1:intron |
GTCAAATGAAGTGATCGGAC+AGG | 0.518900 | 1:-74029258 | MsaT004791.1:CDS |
GTTACATGGAGATTTGAGGA+AGG | 0.528819 | 1:-74027258 | MsaT004791.1:CDS |
GTGATCGGACAGGGCAGTCA+TGG | 0.529144 | 1:-74029248 | MsaT004791.1:intron |
TCCACTTATTTCCAGGCTGG+TGG | 0.529612 | 1:-74027450 | MsaT004791.1:intron |
GAATGCTATATGCAATGACT+TGG | 0.539409 | 1:-74029856 | MsaT004791.1:CDS |
ACCTTGCAACTGAAAGGTGT+TGG | 0.540384 | 1:-74029039 | MsaT004791.1:CDS |
TTGCGTACCTTGCAACTGAA+AGG | 0.548539 | 1:-74029045 | MsaT004791.1:CDS |
CAGATACAGGCACTCCGGGT+TGG | 0.550562 | 1:-74027834 | MsaT004791.1:CDS |
AACAAAGCTGATGGTTGACC+CGG | 0.554562 | 1:+74028947 | None:intergenic |
TCTTATGAAACGCACTAACT+CGG | 0.557152 | 1:+74027215 | None:intergenic |
CGTCTGATATCTTTAGCTTG+GGG | 0.559976 | 1:-74027768 | MsaT004791.1:CDS |
TCAGATGAAATGCAATGACT+TGG | 0.563538 | 1:-74029787 | MsaT004791.1:CDS |
GATTAGCCGGCTATTAATCC+CGG | 0.563917 | 1:-74027614 | MsaT004791.1:CDS |
AAGCAAAGGATCTGATTAGC+CGG | 0.568657 | 1:-74027627 | MsaT004791.1:CDS |
AATTGCAGATACAGGCACTC+CGG | 0.570463 | 1:-74027839 | MsaT004791.1:intron |
TAAAACTATAGGCAATATTG+AGG | 0.571639 | 1:-74029282 | MsaT004791.1:CDS |
TGAGGCTACTTGGGATATTG+AGG | 0.572957 | 1:-74029733 | MsaT004791.1:CDS |
ATTTGTGGATTAAGATTACC+GGG | 0.574564 | 1:-74028965 | MsaT004791.1:CDS |
CATGTTACTTGATGGCTTAG+GGG | 0.579639 | 1:-74027650 | MsaT004791.1:CDS |
AAGGTCGTTCTTCAGAACAA+TGG | 0.580530 | 1:-74028679 | MsaT004791.1:CDS |
CCTTGCAACTGAAAGGTGTT+GGG | 0.583647 | 1:-74029038 | MsaT004791.1:CDS |
CTTATCAGATGAAAGCCGTA+GGG | 0.590298 | 1:-74029878 | MsaT004791.1:CDS |
ACTTATCAGATGAAAGCCGT+AGG | 0.596439 | 1:-74029879 | MsaT004791.1:CDS |
TTGTAAGATCTCCAAATGGA+TGG | 0.603112 | 1:+74027713 | None:intergenic |
TCAAATGAAGTGATCGGACA+GGG | 0.605747 | 1:-74029257 | MsaT004791.1:CDS |
TGATGGCTTAGGGGAAGCAA+AGG | 0.606786 | 1:-74027641 | MsaT004791.1:CDS |
ATGGGTCCGGGATTAATAGC+CGG | 0.607532 | 1:+74027608 | None:intergenic |
CTTTGTTAATAAAACTTACG+AGG | 0.607905 | 1:-74028931 | MsaT004791.1:intron |
ACAGTTCGCAGTAGACAAGC+AGG | 0.608525 | 1:+74030035 | None:intergenic |
AGCTGCTAGGAAAGATGATG+AGG | 0.608825 | 1:-74029751 | MsaT004791.1:CDS |
TTCGCAGTAGACAAGCAGGC+GGG | 0.608845 | 1:+74030039 | None:intergenic |
GGAGTGCAGTGCAGATAGTG+AGG | 0.610414 | 1:-74029071 | MsaT004791.1:intron |
CCCAAGCTAAAGATATCAGA+CGG | 0.620366 | 1:+74027769 | None:intergenic |
TTCTTCATATGAAAGCTGCT+AGG | 0.620931 | 1:-74029764 | MsaT004791.1:CDS |
CAACAAACAGAAATCTGTCA+AGG | 0.621580 | 1:+74030108 | None:intergenic |
ATATATATATCCAAAGAGCT+GGG | 0.621937 | 1:+74030131 | None:intergenic |
CTCGGATATGGGAATAAGCA+AGG | 0.623739 | 1:-74028698 | MsaT004791.1:CDS |
GTTCTTCAGAACAATGGGAA+TGG | 0.629454 | 1:-74028673 | MsaT004791.1:CDS |
TATCAGACGGATAACTATGG+GGG | 0.631502 | 1:+74027782 | None:intergenic |
AACTGGTCGAGAAAGTTACA+TGG | 0.634761 | 1:-74027272 | MsaT004791.1:CDS |
TCAGTTGTAAGATCTCCAAA+TGG | 0.637105 | 1:+74027709 | None:intergenic |
ATCTTCATATGAAAGCTGCT+AGG | 0.646080 | 1:-74029833 | MsaT004791.1:CDS |
ATTGCATATAGCATTCCCTA+CGG | 0.649270 | 1:+74029863 | None:intergenic |
AGTTCATCGAAACAGAAAAG+GGG | 0.656203 | 1:-74029003 | MsaT004791.1:CDS |
GAGGTGTCAAATGAAGTGAT+CGG | 0.660034 | 1:-74029263 | MsaT004791.1:CDS |
TGCTTGTCTACTGCGAACTG+TGG | 0.660612 | 1:-74030033 | MsaT004791.1:CDS |
TCCCCAGAGCAGATTAAGGG+AGG | 0.661857 | 1:-74027808 | MsaT004791.1:CDS |
TAAGATCTCCAAATGGATGG+TGG | 0.665872 | 1:+74027716 | None:intergenic |
TCCTCCCTTAATCTGCTCTG+GGG | 0.676537 | 1:+74027807 | None:intergenic |
ATATCAGACGGATAACTATG+GGG | 0.679510 | 1:+74027781 | None:intergenic |
GTTCATCGAAACAGAAAAGG+GGG | 0.694577 | 1:-74029002 | MsaT004791.1:CDS |
GTTCGCAGTAGACAAGCAGG+CGG | 0.700106 | 1:+74030038 | None:intergenic |
ATCAGACGGATAACTATGGG+GGG | 0.706674 | 1:+74027783 | None:intergenic |
TAATCCCGGACCCATCTCAG+AGG | 0.711253 | 1:-74027600 | MsaT004791.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 74027229 | 74030189 | 74027229 | ID=MsaG004791 |
Chr1 | mRNA | 74027229 | 74030189 | 74027229 | ID=MsaT004791.1;Parent=MsaG004791 |
Chr1 | exon | 74027229 | 74027457 | 74027229 | ID=MsaT004791.1.exon6;Parent=MsaT004791.1 |
Chr1 | CDS | 74027229 | 74027457 | 74027229 | ID=cds.MsaT004791.1;Parent=MsaT004791.1 |
Chr1 | exon | 74027601 | 74027853 | 74027601 | ID=MsaT004791.1.exon5;Parent=MsaT004791.1 |
Chr1 | CDS | 74027601 | 74027853 | 74027601 | ID=cds.MsaT004791.1;Parent=MsaT004791.1 |
Chr1 | exon | 74028665 | 74028846 | 74028665 | ID=MsaT004791.1.exon4;Parent=MsaT004791.1 |
Chr1 | CDS | 74028665 | 74028846 | 74028665 | ID=cds.MsaT004791.1;Parent=MsaT004791.1 |
Chr1 | exon | 74028932 | 74029079 | 74028932 | ID=MsaT004791.1.exon3;Parent=MsaT004791.1 |
Chr1 | CDS | 74028932 | 74029079 | 74028932 | ID=cds.MsaT004791.1;Parent=MsaT004791.1 |
Chr1 | exon | 74029249 | 74029335 | 74029249 | ID=MsaT004791.1.exon2;Parent=MsaT004791.1 |
Chr1 | CDS | 74029249 | 74029335 | 74029249 | ID=cds.MsaT004791.1;Parent=MsaT004791.1 |
Chr1 | exon | 74029715 | 74030189 | 74029715 | ID=MsaT004791.1.exon1;Parent=MsaT004791.1 |
Chr1 | CDS | 74029715 | 74030189 | 74029715 | ID=cds.MsaT004791.1;Parent=MsaT004791.1 |
Gene Sequence |
Protein sequence |