AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG004791


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004791 MtrunA17_Chr1g0201211 69.375 160 38 3 1 158 156 306 1.71e-62 205
MsaG004791 MtrunA17_Chr1g0200771 73.276 116 24 2 49 158 1 115 1.69e-49 164
MsaG004791 MtrunA17_Chr5g0407261 38.889 288 136 9 185 443 541 817 6.31e-42 159
MsaG004791 MtrunA17_Chr8g0370241 40.977 266 117 8 170 404 465 721 9.73e-42 158
MsaG004791 MtrunA17_Chr8g0369971 43.000 200 99 6 185 382 429 615 4.39e-33 132
MsaG004791 MtrunA17_Chr2g0326531 32.099 162 97 5 234 393 229 379 2.00e-14 74.7
MsaG004791 MtrunA17_Chr5g0424581 30.698 215 108 10 194 393 189 377 5.84e-12 67.4
MsaG004791 MtrunA17_Chr3g0132671 30.000 160 94 5 239 394 156 301 6.08e-12 67.8
MsaG004791 MtrunA17_Chr4g0001331 29.534 193 98 7 234 413 121 288 6.44e-12 67.4
MsaG004791 MtrunA17_Chr3g0107011 28.910 211 122 9 192 394 78 268 1.03e-11 66.6
MsaG004791 MtrunA17_Chr3g0114511 29.375 160 98 6 239 394 136 284 1.27e-11 66.2
MsaG004791 MtrunA17_Chr5g0402091 28.571 224 136 9 180 393 55 264 1.82e-11 65.5
MsaG004791 MtrunA17_Chr5g0428031 33.136 169 84 9 239 397 116 265 2.29e-11 65.5
MsaG004791 MtrunA17_Chr5g0424531 31.220 205 120 9 194 393 80 268 3.09e-11 63.9
MsaG004791 MtrunA17_Chr5g0424651 29.902 204 124 8 194 393 385 573 3.47e-11 65.5
MsaG004791 MtrunA17_Chr1g0203881 28.114 281 158 14 122 391 49 296 5.30e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG004791 AT2G17520.1 35.640 289 146 8 185 442 473 752 4.93e-38 147
MsaG004791 AT5G24360.2 37.333 225 122 7 226 442 585 798 5.28e-33 133
MsaG004791 AT5G24360.3 37.333 225 122 7 226 442 565 778 6.30e-33 132
MsaG004791 AT5G24360.1 37.333 225 122 7 226 442 579 792 6.44e-33 132
MsaG004791 AT3G11870.1 37.968 187 100 8 226 404 240 418 1.42e-21 97.8
MsaG004791 AT5G01810.3 30.460 174 88 7 234 394 113 266 2.19e-13 72.0
MsaG004791 AT5G01810.1 30.460 174 88 7 234 394 113 266 2.85e-13 72.0
MsaG004791 AT5G01810.2 30.460 174 88 7 234 394 113 266 2.85e-13 72.0
MsaG004791 AT3G45240.2 30.636 173 101 7 226 391 206 366 3.30e-12 68.6
MsaG004791 AT3G45240.1 30.636 173 101 7 226 391 206 366 3.30e-12 68.6
MsaG004791 AT1G12580.1 33.537 164 90 9 235 391 148 299 2.26e-11 66.2
MsaG004791 AT5G39440.1 32.298 161 96 6 235 394 122 270 2.43e-11 66.2
MsaG004791 AT1G29230.1 25.778 225 129 8 192 403 138 337 2.93e-11 65.9
MsaG004791 AT1G53165.2 27.962 211 131 8 193 399 79 272 4.62e-11 65.5
MsaG004791 AT1G53165.3 27.962 211 131 8 193 399 79 272 4.76e-11 65.5
MsaG004791 AT1G53165.1 27.962 211 131 8 193 399 79 272 5.88e-11 65.1
MsaG004791 AT2G35890.2 32.370 173 101 7 229 397 233 393 6.05e-11 65.1
MsaG004791 AT2G35890.1 32.370 173 101 7 229 397 233 393 6.05e-11 65.1
MsaG004791 AT5G40440.6 30.198 202 104 10 229 416 166 344 7.37e-11 64.7
MsaG004791 AT5G40440.3 30.198 202 104 10 229 416 166 344 7.37e-11 64.7
MsaG004791 AT5G40440.2 30.198 202 104 10 229 416 166 344 7.37e-11 64.7
MsaG004791 AT2G45490.1 33.974 156 86 9 239 391 129 270 7.89e-11 63.2
MsaG004791 AT5G40440.5 30.198 202 104 10 229 416 102 280 8.88e-11 64.3
MsaG004791 AT2G25090.1 28.488 172 101 7 228 388 112 272 8.92e-11 64.3

Find 103 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTACCATTACTTGTTAA+AGG 0.206476 1:-74027296 MsaT004791.1:CDS
GGTCATCAAGATCTCGGATA+TGG 0.283671 1:-74028710 MsaT004791.1:CDS
GCGATCCCCAGAGCAGATTA+AGG 0.292814 1:-74027812 MsaT004791.1:CDS
TCTGTTGTTCAAATAATTTC+CGG 0.295999 1:+74027324 None:intergenic
CTTGACAGATTTCTGTTTGT+TGG 0.302379 1:-74030107 MsaT004791.1:CDS
AGCTGATACTCCCAGCTCTT+TGG 0.316258 1:-74030141 MsaT004791.1:CDS
GTTCCTCCCTTAATCTGCTC+TGG 0.327065 1:+74027805 None:intergenic
CATTACTTGTTAAAGGAAAC+TGG 0.330094 1:-74027289 MsaT004791.1:CDS
CCGTCTGATATCTTTAGCTT+GGG 0.337290 1:-74027769 MsaT004791.1:CDS
AGATATCAGACGGATAACTA+TGG 0.344947 1:+74027779 None:intergenic
ATGGATCTCATGTTACTTGA+TGG 0.368910 1:-74027658 MsaT004791.1:CDS
ACCAAGGGCCACCATCCATT+TGG 0.370338 1:-74027724 MsaT004791.1:CDS
TTCCTCCCTTAATCTGCTCT+GGG 0.373672 1:+74027806 None:intergenic
TCATGTTACTTGATGGCTTA+GGG 0.375395 1:-74027651 MsaT004791.1:CDS
TATTTGAACAACAGACTTGC+TGG 0.384296 1:-74027316 MsaT004791.1:CDS
CTCTTATGCATTCATGACTT+TGG 0.384634 1:-74030180 None:intergenic
TCCGTCTGATATCTTTAGCT+TGG 0.390459 1:-74027770 MsaT004791.1:CDS
CTCATGTTACTTGATGGCTT+AGG 0.399684 1:-74027652 MsaT004791.1:CDS
GATTTGTGGATTAAGATTAC+CGG 0.414730 1:-74028966 MsaT004791.1:CDS
GGAAAGATGATGAGGCTACT+TGG 0.425652 1:-74029743 MsaT004791.1:CDS
TGAGTTCATCGAAACAGAAA+AGG 0.431827 1:-74029005 MsaT004791.1:CDS
TTTGTGGTTTCGGATCTCTA+TGG 0.436360 1:+74028782 None:intergenic
CAGTTTCCTTTAACAAGTAA+TGG 0.437225 1:+74027290 None:intergenic
TGAAAGCTGCTAGGAAAGAA+TGG 0.439565 1:-74029824 MsaT004791.1:CDS
CAACTGTTGTTGTACAAAGA+TGG 0.441652 1:-74029911 MsaT004791.1:CDS
AGATCGGATCTTAAAACTAT+AGG 0.445449 1:-74029293 MsaT004791.1:CDS
TTCAATATTGAACAATAAGA+TGG 0.452974 1:-74027677 MsaT004791.1:CDS
TGCTCTGGGGATCGCCAACC+CGG 0.458871 1:+74027820 None:intergenic
GATATATATATCCAAAGAGC+TGG 0.467789 1:+74030130 None:intergenic
AACAATGGGAATGGTACTCT+TGG 0.470478 1:-74028664 MsaT004791.1:intron
CGATCCCCAGAGCAGATTAA+GGG 0.475727 1:-74027811 MsaT004791.1:CDS
TGAGGAAGGAAGTTACTGTA+GGG 0.476823 1:-74027244 MsaT004791.1:CDS
TTTACCTCTGAGATGGGTCC+GGG 0.480588 1:+74027596 None:intergenic
ACTTATTTCCAGGCTGGTGG+CGG 0.483692 1:-74027447 MsaT004791.1:intron
GAGTTCATCGAAACAGAAAA+GGG 0.483775 1:-74029004 MsaT004791.1:CDS
AGGTCGTTCTTCAGAACAAT+GGG 0.486817 1:-74028678 MsaT004791.1:CDS
GAAAGTTACATGGAGATTTG+AGG 0.486850 1:-74027262 MsaT004791.1:CDS
CCCAACACCTTTCAGTTGCA+AGG 0.487759 1:+74029038 None:intergenic
AGCTGAGCAGCATAACTCAT+TGG 0.494981 1:-74028731 MsaT004791.1:CDS
GTCATCAAGATCTCGGATAT+GGG 0.497481 1:-74028709 MsaT004791.1:CDS
TCCAAATGGATGGTGGCCCT+TGG 0.498824 1:+74027723 None:intergenic
TTGAGGAAGGAAGTTACTGT+AGG 0.501085 1:-74027245 MsaT004791.1:CDS
GAAAGATGATGAGGCTACTT+GGG 0.502305 1:-74029742 MsaT004791.1:CDS
CTCATTGGTCATCAAGATCT+CGG 0.502816 1:-74028716 MsaT004791.1:CDS
GAAAGCTGCTAGGAAAGAAT+GGG 0.505632 1:-74029823 MsaT004791.1:CDS
GATATCAGACGGATAACTAT+GGG 0.506588 1:+74027780 None:intergenic
AACTGTTGTTGTACAAAGAT+GGG 0.507933 1:-74029910 MsaT004791.1:CDS
GCGGTGCTGAATTTGATTTG+TGG 0.511467 1:-74028980 MsaT004791.1:CDS
ATTGCAGATACAGGCACTCC+GGG 0.513292 1:-74027838 MsaT004791.1:intron
GTCAAATGAAGTGATCGGAC+AGG 0.518900 1:-74029258 MsaT004791.1:CDS
GTTACATGGAGATTTGAGGA+AGG 0.528819 1:-74027258 MsaT004791.1:CDS
GTGATCGGACAGGGCAGTCA+TGG 0.529144 1:-74029248 MsaT004791.1:intron
TCCACTTATTTCCAGGCTGG+TGG 0.529612 1:-74027450 MsaT004791.1:intron
GAATGCTATATGCAATGACT+TGG 0.539409 1:-74029856 MsaT004791.1:CDS
ACCTTGCAACTGAAAGGTGT+TGG 0.540384 1:-74029039 MsaT004791.1:CDS
TTGCGTACCTTGCAACTGAA+AGG 0.548539 1:-74029045 MsaT004791.1:CDS
CAGATACAGGCACTCCGGGT+TGG 0.550562 1:-74027834 MsaT004791.1:CDS
AACAAAGCTGATGGTTGACC+CGG 0.554562 1:+74028947 None:intergenic
TCTTATGAAACGCACTAACT+CGG 0.557152 1:+74027215 None:intergenic
CGTCTGATATCTTTAGCTTG+GGG 0.559976 1:-74027768 MsaT004791.1:CDS
TCAGATGAAATGCAATGACT+TGG 0.563538 1:-74029787 MsaT004791.1:CDS
GATTAGCCGGCTATTAATCC+CGG 0.563917 1:-74027614 MsaT004791.1:CDS
AAGCAAAGGATCTGATTAGC+CGG 0.568657 1:-74027627 MsaT004791.1:CDS
AATTGCAGATACAGGCACTC+CGG 0.570463 1:-74027839 MsaT004791.1:intron
TAAAACTATAGGCAATATTG+AGG 0.571639 1:-74029282 MsaT004791.1:CDS
TGAGGCTACTTGGGATATTG+AGG 0.572957 1:-74029733 MsaT004791.1:CDS
ATTTGTGGATTAAGATTACC+GGG 0.574564 1:-74028965 MsaT004791.1:CDS
CATGTTACTTGATGGCTTAG+GGG 0.579639 1:-74027650 MsaT004791.1:CDS
AAGGTCGTTCTTCAGAACAA+TGG 0.580530 1:-74028679 MsaT004791.1:CDS
CCTTGCAACTGAAAGGTGTT+GGG 0.583647 1:-74029038 MsaT004791.1:CDS
CTTATCAGATGAAAGCCGTA+GGG 0.590298 1:-74029878 MsaT004791.1:CDS
ACTTATCAGATGAAAGCCGT+AGG 0.596439 1:-74029879 MsaT004791.1:CDS
TTGTAAGATCTCCAAATGGA+TGG 0.603112 1:+74027713 None:intergenic
TCAAATGAAGTGATCGGACA+GGG 0.605747 1:-74029257 MsaT004791.1:CDS
TGATGGCTTAGGGGAAGCAA+AGG 0.606786 1:-74027641 MsaT004791.1:CDS
ATGGGTCCGGGATTAATAGC+CGG 0.607532 1:+74027608 None:intergenic
CTTTGTTAATAAAACTTACG+AGG 0.607905 1:-74028931 MsaT004791.1:intron
ACAGTTCGCAGTAGACAAGC+AGG 0.608525 1:+74030035 None:intergenic
AGCTGCTAGGAAAGATGATG+AGG 0.608825 1:-74029751 MsaT004791.1:CDS
TTCGCAGTAGACAAGCAGGC+GGG 0.608845 1:+74030039 None:intergenic
GGAGTGCAGTGCAGATAGTG+AGG 0.610414 1:-74029071 MsaT004791.1:intron
CCCAAGCTAAAGATATCAGA+CGG 0.620366 1:+74027769 None:intergenic
TTCTTCATATGAAAGCTGCT+AGG 0.620931 1:-74029764 MsaT004791.1:CDS
CAACAAACAGAAATCTGTCA+AGG 0.621580 1:+74030108 None:intergenic
ATATATATATCCAAAGAGCT+GGG 0.621937 1:+74030131 None:intergenic
CTCGGATATGGGAATAAGCA+AGG 0.623739 1:-74028698 MsaT004791.1:CDS
GTTCTTCAGAACAATGGGAA+TGG 0.629454 1:-74028673 MsaT004791.1:CDS
TATCAGACGGATAACTATGG+GGG 0.631502 1:+74027782 None:intergenic
AACTGGTCGAGAAAGTTACA+TGG 0.634761 1:-74027272 MsaT004791.1:CDS
TCAGTTGTAAGATCTCCAAA+TGG 0.637105 1:+74027709 None:intergenic
ATCTTCATATGAAAGCTGCT+AGG 0.646080 1:-74029833 MsaT004791.1:CDS
ATTGCATATAGCATTCCCTA+CGG 0.649270 1:+74029863 None:intergenic
AGTTCATCGAAACAGAAAAG+GGG 0.656203 1:-74029003 MsaT004791.1:CDS
GAGGTGTCAAATGAAGTGAT+CGG 0.660034 1:-74029263 MsaT004791.1:CDS
TGCTTGTCTACTGCGAACTG+TGG 0.660612 1:-74030033 MsaT004791.1:CDS
TCCCCAGAGCAGATTAAGGG+AGG 0.661857 1:-74027808 MsaT004791.1:CDS
TAAGATCTCCAAATGGATGG+TGG 0.665872 1:+74027716 None:intergenic
TCCTCCCTTAATCTGCTCTG+GGG 0.676537 1:+74027807 None:intergenic
ATATCAGACGGATAACTATG+GGG 0.679510 1:+74027781 None:intergenic
GTTCATCGAAACAGAAAAGG+GGG 0.694577 1:-74029002 MsaT004791.1:CDS
GTTCGCAGTAGACAAGCAGG+CGG 0.700106 1:+74030038 None:intergenic
ATCAGACGGATAACTATGGG+GGG 0.706674 1:+74027783 None:intergenic
TAATCCCGGACCCATCTCAG+AGG 0.711253 1:-74027600 MsaT004791.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 74027229 74030189 74027229 ID=MsaG004791
Chr1 mRNA 74027229 74030189 74027229 ID=MsaT004791.1;Parent=MsaG004791
Chr1 exon 74027229 74027457 74027229 ID=MsaT004791.1.exon6;Parent=MsaT004791.1
Chr1 CDS 74027229 74027457 74027229 ID=cds.MsaT004791.1;Parent=MsaT004791.1
Chr1 exon 74027601 74027853 74027601 ID=MsaT004791.1.exon5;Parent=MsaT004791.1
Chr1 CDS 74027601 74027853 74027601 ID=cds.MsaT004791.1;Parent=MsaT004791.1
Chr1 exon 74028665 74028846 74028665 ID=MsaT004791.1.exon4;Parent=MsaT004791.1
Chr1 CDS 74028665 74028846 74028665 ID=cds.MsaT004791.1;Parent=MsaT004791.1
Chr1 exon 74028932 74029079 74028932 ID=MsaT004791.1.exon3;Parent=MsaT004791.1
Chr1 CDS 74028932 74029079 74028932 ID=cds.MsaT004791.1;Parent=MsaT004791.1
Chr1 exon 74029249 74029335 74029249 ID=MsaT004791.1.exon2;Parent=MsaT004791.1
Chr1 CDS 74029249 74029335 74029249 ID=cds.MsaT004791.1;Parent=MsaT004791.1
Chr1 exon 74029715 74030189 74029715 ID=MsaT004791.1.exon1;Parent=MsaT004791.1
Chr1 CDS 74029715 74030189 74029715 ID=cds.MsaT004791.1;Parent=MsaT004791.1
Gene Sequence

>MsaT004791.1

ATGACTTTGGTTGTTTTGAATAATTTAGCTGATACTCCCAGCTCTTTGGATATATATATCCTTGACAGATTTCTGTTTGTTGGTTGTATTTTCTATTGGCTTGTCATAGGACCTGTAATCTTACAAAACCCGCCTGCTTGTCTACTGCGAACTGTGGTTTTCTTGGTCACATCATGTTGTGTGTGTGTGTTAACGATCGTTCTGATTTCTGTTGTTGATGCTGTAATTATTTTCATTGTTTGGATGGTGGCTATATCAACTGTTGTTGTACAAAGATGGGATCACTTTACTTATCAGATGAAAGCCGTAGGGAATGCTATATGCAATGACTTGGATCTTCATATGAAAGCTGCTAGGAAAGAATGGGATCACTTTACTTATCAGATGAAATGCAATGACTTGGTTCTTCATATGAAAGCTGCTAGGAAAGATGATGAGGCTACTTGGGATATTGAGGCAAACAATTTTAATTTATTGTTGGACATTGAGCCAAAAAGATCGGATCTTAAAACTATAGGCAATATTGAGGTGTCAAATGAAGTGATCGGACAGGGCAGTCATGATAGTGAGGATTTTGCGTACCTTGCAACTGAAAGGTGTTGGGTGAACTTGTTTGAGTTCATCGAAACAGAAAAGGGGGCGGTGCTGAATTTGATTTGTGGATTAAGATTACCGGGTCAACCATCAGCTTTGTTAATAAAACTTACGAGGGGGATTGTGAAGGGGATACGGTTTTGCGGAAAGAAAATTATCCATAGAGATCCGAAACCACAAAACATTCTGTTGTTAAAAAATGAAGCTGAAGCTGAGCAGCATAACTCATTGGTCATCAAGATCTCGGATATGGGAATAAGCAAGGTCGTTCTTCAGAACAATGGGAATGGTACTCTTGATACAGGCACTCCGGGTTGGCGATCCCCAGAGCAGATTAAGGGAGGAACCCCCCATAGTTATCCGTCTGATATCTTTAGCTTGGGGATCACAATGTTTTACTGTTTGACCAAGGGCCACCATCCATTTGGAGATCTTACAACTGAGCGTGAGAATTCAATATTGAACAATAAGATGGATCTCATGTTACTTGATGGCTTAGGGGAAGCAAAGGATCTGATTAGCCGGCTATTAATCCCGGACCCATCTCAGAGGCTGGTGGCGGATCAAGTGTTGAAACATCTTTTTTTCTGGGATTCAGAACAGAGATTACGTTTTGTATGGGCAGTTCATACCGTCTTGAGTGACAAAAAGAAAGGATCTCTCCGGAAATTATTTGAACAACAGACTTGCTGGTTACCATTACTTGTTAAAGGAAACTGGTCGAGAAAGTTACATGGAGATTTGAGGAAGGAAGTTACTGTAGGGAAGTTGCCGAGTTAG

Protein sequence

>MsaT004791.1

MTLVVLNNLADTPSSLDIYILDRFLFVGCIFYWLVIGPVILQNPPACLLRTVVFLVTSCCVCVLTIVLISVVDAVIIFIVWMVAISTVVVQRWDHFTYQMKAVGNAICNDLDLHMKAARKEWDHFTYQMKCNDLVLHMKAARKDDEATWDIEANNFNLLLDIEPKRSDLKTIGNIEVSNEVIGQGSHDSEDFAYLATERCWVNLFEFIETEKGAVLNLICGLRLPGQPSALLIKLTRGIVKGIRFCGKKIIHRDPKPQNILLLKNEAEAEQHNSLVIKISDMGISKVVLQNNGNGTLDTGTPGWRSPEQIKGGTPHSYPSDIFSLGITMFYCLTKGHHPFGDLTTERENSILNNKMDLMLLDGLGEAKDLISRLLIPDPSQRLVADQVLKHLFFWDSEQRLRFVWAVHTVLSDKKKGSLRKLFEQQTCWLPLLVKGNWSRKLHGDLRKEVTVGKLPS*