Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004832 | XP_039685836.1 | 86.853 | 464 | 29 | 2 | 1 | 432 | 1 | 464 | 0.0 | 818 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004832 | sp|Q84WW6|ASHH1_ARATH | 58.887 | 467 | 147 | 6 | 3 | 424 | 23 | 489 | 0.0 | 536 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004832 | tr|A0A396JTI7|A0A396JTI7_MEDTR | 85.931 | 462 | 33 | 2 | 3 | 432 | 18 | 479 | 0.0 | 801 |
Gene ID | Type | Classification |
---|---|---|
MsaG004832 | TR | SET |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG004832 | MsaG043463 | 0.880905 | 7.906840e-70 | 1.488963e-66 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004832 | MtrunA17_Chr1g0201311 | 85.931 | 462 | 33 | 2 | 3 | 432 | 18 | 479 | 0.0 | 801 |
MsaG004832 | MtrunA17_Chr1g0201621 | 85.714 | 462 | 34 | 3 | 3 | 432 | 18 | 479 | 0.0 | 798 |
MsaG004832 | MtrunA17_Chr3g0125251 | 41.818 | 220 | 125 | 3 | 11 | 229 | 1267 | 1484 | 1.33e-52 | 190 |
MsaG004832 | MtrunA17_Chr6g0477001 | 41.706 | 211 | 120 | 3 | 1 | 211 | 46 | 253 | 7.18e-45 | 159 |
MsaG004832 | MtrunA17_Chr2g0305371 | 37.129 | 202 | 123 | 3 | 32 | 233 | 299 | 496 | 4.91e-36 | 139 |
MsaG004832 | MtrunA17_Chr1g0201321 | 68.675 | 83 | 11 | 2 | 256 | 323 | 1 | 83 | 9.23e-27 | 102 |
MsaG004832 | MtrunA17_Chr2g0297191 | 36.429 | 140 | 88 | 1 | 65 | 204 | 1028 | 1166 | 2.68e-23 | 103 |
MsaG004832 | MtrunA17_Chr5g0403241 | 36.420 | 162 | 88 | 3 | 58 | 204 | 1341 | 1502 | 2.18e-22 | 100 |
MsaG004832 | MtrunA17_Chr4g0075321 | 34.756 | 164 | 88 | 3 | 58 | 204 | 898 | 1059 | 8.47e-22 | 98.6 |
MsaG004832 | MtrunA17_Chr5g0401921 | 36.095 | 169 | 92 | 3 | 27 | 188 | 672 | 831 | 8.93e-22 | 98.2 |
MsaG004832 | MtrunA17_Chr7g0235081 | 41.525 | 118 | 69 | 0 | 70 | 187 | 195 | 312 | 7.78e-21 | 93.2 |
MsaG004832 | MtrunA17_Chr7g0275611 | 38.158 | 152 | 88 | 4 | 61 | 208 | 814 | 963 | 2.39e-20 | 94.0 |
MsaG004832 | MtrunA17_Chr3g0126701 | 36.242 | 149 | 91 | 3 | 63 | 208 | 915 | 1062 | 3.61e-20 | 93.6 |
MsaG004832 | MtrunA17_Chr1g0147121 | 35.762 | 151 | 93 | 3 | 61 | 208 | 884 | 1033 | 4.81e-20 | 93.2 |
MsaG004832 | MtrunA17_Chr8g0347071 | 36.424 | 151 | 92 | 3 | 61 | 208 | 799 | 948 | 9.45e-20 | 92.0 |
MsaG004832 | MtrunA17_Chr8g0354821 | 30.435 | 207 | 94 | 6 | 46 | 209 | 489 | 688 | 1.75e-19 | 91.3 |
MsaG004832 | MtrunA17_Chr7g0221611 | 36.943 | 157 | 89 | 3 | 75 | 230 | 911 | 1058 | 3.12e-19 | 90.5 |
MsaG004832 | MtrunA17_Chr1g0149611 | 37.324 | 142 | 82 | 3 | 73 | 208 | 367 | 507 | 7.04e-19 | 89.0 |
MsaG004832 | MtrunA17_Chr1g0149581 | 35.461 | 141 | 86 | 2 | 73 | 208 | 1525 | 1665 | 7.09e-19 | 89.7 |
MsaG004832 | MtrunA17_Chr8g0373821 | 35.000 | 160 | 90 | 4 | 58 | 204 | 375 | 533 | 9.08e-19 | 88.6 |
MsaG004832 | MtrunA17_Chr5g0399801 | 33.838 | 198 | 93 | 9 | 46 | 208 | 894 | 1088 | 9.16e-19 | 89.4 |
MsaG004832 | MtrunA17_Chr1g0194631 | 35.329 | 167 | 92 | 4 | 27 | 187 | 570 | 726 | 1.00e-18 | 89.0 |
MsaG004832 | MtrunA17_Chr1g0170651 | 38.182 | 165 | 68 | 9 | 54 | 205 | 399 | 542 | 2.29e-18 | 87.4 |
MsaG004832 | MtrunA17_Chr7g0255181 | 31.522 | 184 | 104 | 5 | 46 | 208 | 522 | 704 | 4.78e-18 | 86.7 |
MsaG004832 | MtrunA17_Chr4g0003511 | 32.000 | 200 | 88 | 9 | 46 | 205 | 857 | 1048 | 5.29e-18 | 87.0 |
MsaG004832 | MtrunA17_Chr4g0003501 | 31.959 | 194 | 94 | 9 | 46 | 205 | 762 | 951 | 6.74e-17 | 83.6 |
MsaG004832 | MtrunA17_Chr3g0080761 | 30.964 | 197 | 97 | 7 | 46 | 204 | 464 | 659 | 2.06e-15 | 78.6 |
MsaG004832 | MtrunA17_Chr7g0232981 | 29.082 | 196 | 102 | 7 | 22 | 188 | 301 | 488 | 3.50e-14 | 74.3 |
MsaG004832 | MtrunA17_Chr6g0460921 | 31.788 | 151 | 87 | 4 | 52 | 186 | 247 | 397 | 4.21e-14 | 73.9 |
MsaG004832 | MtrunA17_Chr7g0270001 | 36.697 | 109 | 67 | 1 | 80 | 188 | 159 | 265 | 7.13e-14 | 72.0 |
MsaG004832 | MtrunA17_Chr1g0183321 | 28.090 | 178 | 98 | 6 | 52 | 204 | 569 | 741 | 4.34e-12 | 68.2 |
MsaG004832 | MtrunA17_Chr7g0252211 | 29.703 | 202 | 102 | 8 | 46 | 208 | 556 | 756 | 5.95e-12 | 67.8 |
MsaG004832 | MtrunA17_Chr6g0476121 | 30.392 | 204 | 98 | 9 | 46 | 208 | 442 | 642 | 4.06e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004832 | AT1G76710.2 | 58.887 | 467 | 147 | 6 | 3 | 424 | 23 | 489 | 0.0 | 536 |
MsaG004832 | AT1G76710.1 | 58.887 | 467 | 147 | 6 | 3 | 424 | 23 | 489 | 0.0 | 536 |
MsaG004832 | AT1G76710.4 | 57.983 | 476 | 146 | 6 | 3 | 424 | 23 | 498 | 0.0 | 532 |
MsaG004832 | AT1G76710.3 | 55.870 | 494 | 146 | 6 | 3 | 424 | 23 | 516 | 0.0 | 526 |
MsaG004832 | AT1G77300.2 | 41.892 | 222 | 121 | 4 | 11 | 229 | 969 | 1185 | 1.45e-53 | 193 |
MsaG004832 | AT1G77300.1 | 41.892 | 222 | 121 | 4 | 11 | 229 | 969 | 1185 | 1.49e-53 | 193 |
MsaG004832 | AT4G30860.1 | 41.436 | 181 | 100 | 4 | 34 | 213 | 294 | 469 | 4.39e-35 | 136 |
MsaG004832 | AT3G59960.3 | 45.395 | 152 | 82 | 1 | 60 | 211 | 102 | 252 | 3.08e-34 | 129 |
MsaG004832 | AT3G59960.2 | 45.395 | 152 | 82 | 1 | 60 | 211 | 102 | 252 | 3.08e-34 | 129 |
MsaG004832 | AT3G59960.4 | 45.395 | 152 | 82 | 1 | 60 | 211 | 102 | 252 | 3.08e-34 | 129 |
MsaG004832 | AT3G59960.1 | 45.395 | 152 | 82 | 1 | 60 | 211 | 102 | 252 | 1.31e-33 | 129 |
MsaG004832 | AT2G44150.1 | 44.737 | 152 | 83 | 1 | 60 | 211 | 107 | 257 | 2.27e-33 | 129 |
MsaG004832 | AT5G42400.7 | 42.742 | 124 | 70 | 1 | 81 | 204 | 1261 | 1383 | 2.56e-25 | 109 |
MsaG004832 | AT5G42400.2 | 42.742 | 124 | 70 | 1 | 81 | 204 | 1261 | 1383 | 2.56e-25 | 109 |
MsaG004832 | AT5G42400.8 | 42.742 | 124 | 70 | 1 | 81 | 204 | 1261 | 1383 | 2.56e-25 | 109 |
MsaG004832 | AT5G42400.5 | 42.742 | 124 | 70 | 1 | 81 | 204 | 1261 | 1383 | 2.56e-25 | 109 |
MsaG004832 | AT5G42400.4 | 42.742 | 124 | 70 | 1 | 81 | 204 | 1261 | 1383 | 2.56e-25 | 109 |
MsaG004832 | AT5G42400.1 | 42.742 | 124 | 70 | 1 | 81 | 204 | 1261 | 1383 | 2.56e-25 | 109 |
MsaG004832 | AT5G42400.3 | 42.742 | 124 | 70 | 1 | 81 | 204 | 1261 | 1383 | 2.56e-25 | 109 |
MsaG004832 | AT5G42400.6 | 42.742 | 124 | 70 | 1 | 81 | 204 | 1261 | 1383 | 2.56e-25 | 109 |
MsaG004832 | AT1G02580.1 | 33.728 | 169 | 95 | 3 | 33 | 196 | 518 | 674 | 2.51e-20 | 94.0 |
MsaG004832 | AT4G27910.1 | 36.424 | 151 | 92 | 3 | 61 | 208 | 877 | 1026 | 3.40e-20 | 94.0 |
MsaG004832 | AT1G05830.2 | 36.257 | 171 | 96 | 5 | 53 | 219 | 900 | 1061 | 3.76e-20 | 94.0 |
MsaG004832 | AT1G05830.4 | 36.257 | 171 | 96 | 5 | 53 | 219 | 900 | 1061 | 3.76e-20 | 94.0 |
MsaG004832 | AT1G05830.1 | 36.257 | 171 | 96 | 5 | 53 | 219 | 900 | 1061 | 3.76e-20 | 94.0 |
MsaG004832 | AT1G05830.3 | 36.257 | 171 | 96 | 5 | 53 | 219 | 900 | 1061 | 3.76e-20 | 94.0 |
MsaG004832 | AT2G23380.1 | 36.364 | 154 | 89 | 2 | 35 | 188 | 725 | 869 | 5.12e-20 | 93.6 |
MsaG004832 | AT2G23380.2 | 36.364 | 154 | 89 | 2 | 35 | 188 | 498 | 642 | 1.12e-19 | 92.0 |
MsaG004832 | AT2G35160.2 | 35.754 | 179 | 89 | 8 | 46 | 208 | 625 | 793 | 1.37e-19 | 92.0 |
MsaG004832 | AT2G35160.3 | 35.754 | 179 | 89 | 8 | 46 | 208 | 625 | 793 | 1.37e-19 | 92.0 |
MsaG004832 | AT2G35160.1 | 35.754 | 179 | 89 | 8 | 46 | 208 | 625 | 793 | 1.37e-19 | 92.0 |
MsaG004832 | AT2G35160.4 | 35.754 | 179 | 89 | 8 | 46 | 208 | 625 | 793 | 1.37e-19 | 92.0 |
MsaG004832 | AT2G35160.5 | 34.659 | 176 | 89 | 8 | 46 | 205 | 589 | 754 | 1.52e-19 | 91.7 |
MsaG004832 | AT3G61740.2 | 37.255 | 153 | 89 | 4 | 61 | 208 | 831 | 981 | 4.27e-19 | 90.5 |
MsaG004832 | AT3G03750.2 | 35.556 | 180 | 96 | 6 | 44 | 204 | 167 | 345 | 4.78e-19 | 88.6 |
MsaG004832 | AT3G61740.1 | 37.255 | 153 | 89 | 4 | 61 | 208 | 867 | 1017 | 5.28e-19 | 90.5 |
MsaG004832 | AT2G23740.3 | 36.601 | 153 | 76 | 4 | 51 | 185 | 1206 | 1355 | 1.30e-18 | 89.4 |
MsaG004832 | AT2G23740.6 | 36.601 | 153 | 76 | 4 | 51 | 185 | 1206 | 1355 | 1.30e-18 | 89.4 |
MsaG004832 | AT2G23740.2 | 36.601 | 153 | 76 | 4 | 51 | 185 | 1206 | 1355 | 1.30e-18 | 89.4 |
MsaG004832 | AT2G23740.1 | 36.601 | 153 | 76 | 4 | 51 | 185 | 1199 | 1348 | 1.35e-18 | 89.4 |
MsaG004832 | AT2G31650.1 | 35.673 | 171 | 97 | 5 | 53 | 219 | 879 | 1040 | 2.68e-18 | 88.2 |
MsaG004832 | AT4G02020.1 | 35.878 | 131 | 82 | 1 | 57 | 187 | 695 | 823 | 3.85e-18 | 87.8 |
MsaG004832 | AT5G53430.1 | 35.099 | 151 | 94 | 3 | 61 | 208 | 893 | 1042 | 5.31e-18 | 87.4 |
MsaG004832 | AT1G17770.1 | 32.105 | 190 | 93 | 8 | 50 | 204 | 500 | 688 | 3.51e-16 | 81.3 |
MsaG004832 | AT2G22740.2 | 32.020 | 203 | 97 | 9 | 43 | 208 | 591 | 789 | 1.24e-15 | 79.7 |
MsaG004832 | AT2G22740.1 | 32.020 | 203 | 97 | 9 | 43 | 208 | 591 | 789 | 1.24e-15 | 79.7 |
MsaG004832 | AT5G04940.2 | 29.648 | 199 | 103 | 7 | 46 | 209 | 474 | 670 | 3.11e-15 | 78.6 |
MsaG004832 | AT5G04940.1 | 29.648 | 199 | 103 | 7 | 46 | 209 | 474 | 670 | 3.11e-15 | 78.6 |
MsaG004832 | AT2G24740.1 | 29.480 | 173 | 86 | 6 | 72 | 209 | 584 | 755 | 3.74e-13 | 72.0 |
MsaG004832 | AT2G23740.4 | 38.393 | 112 | 52 | 3 | 51 | 148 | 1206 | 1314 | 6.05e-13 | 71.6 |
MsaG004832 | AT2G23740.5 | 38.393 | 112 | 52 | 3 | 51 | 148 | 1206 | 1314 | 6.05e-13 | 71.6 |
MsaG004832 | AT3G04380.1 | 27.717 | 184 | 95 | 7 | 52 | 206 | 285 | 459 | 7.82e-12 | 67.4 |
MsaG004832 | AT3G04380.4 | 27.717 | 184 | 95 | 7 | 52 | 206 | 285 | 459 | 8.27e-12 | 67.4 |
MsaG004832 | AT3G04380.2 | 27.717 | 184 | 95 | 7 | 52 | 206 | 258 | 432 | 8.97e-12 | 67.0 |
MsaG004832 | AT3G04380.6 | 27.717 | 184 | 95 | 7 | 52 | 206 | 258 | 432 | 9.23e-12 | 67.0 |
MsaG004832 | AT3G04380.3 | 27.717 | 184 | 95 | 7 | 52 | 206 | 269 | 443 | 1.05e-11 | 67.0 |
MsaG004832 | AT3G04380.5 | 27.717 | 184 | 95 | 7 | 52 | 206 | 242 | 416 | 1.13e-11 | 67.0 |
Find 93 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACCTTGAATTTCATAAGTA+TGG | 0.188096 | 1:-74562469 | None:intergenic |
AGGCCGAGGGTGGGGTCTTT+TGG | 0.223348 | 1:+74562261 | MsaT004832.1:CDS |
CATCTCTACCAAAAGATCTA+AGG | 0.291533 | 1:+74564137 | MsaT004832.1:CDS |
CAAGATTTATAAACCATTCC+TGG | 0.303845 | 1:+74562644 | MsaT004832.1:CDS |
GCAAGATCCGTTTGGTATCT+TGG | 0.316517 | 1:-74564060 | None:intergenic |
CAGTGCTGGTTAATACATTT+AGG | 0.324830 | 1:-74561157 | None:intergenic |
CGAATTCGCTCCGCATCATT+AGG | 0.327053 | 1:+74559760 | MsaT004832.1:CDS |
GCACTGGAAGATATTCCTAT+TGG | 0.334570 | 1:+74562866 | MsaT004832.1:CDS |
CTAATGATGCGGAGCGAATT+CGG | 0.336874 | 1:-74559759 | None:intergenic |
CAAACTGTGAGACAAGAAAA+TGG | 0.346413 | 1:+74562810 | MsaT004832.1:CDS |
AGCAGGAGGATACTTATCTA+TGG | 0.346424 | 1:+74563409 | MsaT004832.1:intron |
ATAAGTATGGGATCTGCGTT+TGG | 0.395386 | 1:-74562456 | None:intergenic |
ATCCTTCTCGTGTTCTTCAA+TGG | 0.405165 | 1:-74564757 | None:intergenic |
ATTCTTTATACAATGAAATA+CGG | 0.412721 | 1:+74564730 | MsaT004832.1:CDS |
CAAGATCCGTTTGGTATCTT+GGG | 0.416631 | 1:-74564059 | None:intergenic |
TCCTCCGCAGAGTCATATAA+AGG | 0.419793 | 1:-74563857 | None:intergenic |
CTCAAATGTTCTGAATTCCT+TGG | 0.432418 | 1:+74562959 | MsaT004832.1:CDS |
TTTCATTGTATAAAGAATCA+AGG | 0.435719 | 1:-74564725 | None:intergenic |
TTCTCGTGTTCTTCAATGGC+AGG | 0.436989 | 1:-74564753 | None:intergenic |
CTGAATTCGATTGGGATCAA+TGG | 0.457029 | 1:+74563980 | MsaT004832.1:CDS |
TATTCCTATTGGAACTGAAC+TGG | 0.465129 | 1:+74562877 | MsaT004832.1:CDS |
TCCCATACTTATGAAATTCA+AGG | 0.467960 | 1:+74562467 | MsaT004832.1:CDS |
TTGAAGTGGTTTACCAGGAA+TGG | 0.469527 | 1:-74562657 | None:intergenic |
ACCTTGAATTTCATAAGTAT+GGG | 0.471125 | 1:-74562468 | None:intergenic |
CGCATTCAAAGTAACACTGC+TGG | 0.473536 | 1:+74564105 | MsaT004832.1:CDS |
ATGCCGCTAGGGCAAAATCC+AGG | 0.473906 | 1:-74561188 | None:intergenic |
CCTGACAGTGCATGTGGAGA+TGG | 0.474108 | 1:+74561131 | MsaT004832.1:CDS |
AGTAGCAGAGAAGTGGATAC+AGG | 0.474675 | 1:+74564803 | MsaT004832.1:CDS |
GTTCAACCGCTGAATTCGAT+TGG | 0.477723 | 1:+74563971 | MsaT004832.1:CDS |
TTTGGCTGATGAGGAAATCA+AGG | 0.479939 | 1:+74562279 | MsaT004832.1:CDS |
TCCATCGATGCAACTAGAAA+AGG | 0.481552 | 1:+74562613 | MsaT004832.1:CDS |
TATGCCAGTTCAGTTCCAAT+AGG | 0.481653 | 1:-74562881 | None:intergenic |
AAAACTGAAGGCCGAGGGTG+GGG | 0.484563 | 1:+74562253 | MsaT004832.1:CDS |
TCGATTGGGATCAATGGCTT+AGG | 0.486502 | 1:+74563986 | MsaT004832.1:CDS |
AGCTTTCAGTATAATAGCCA+TGG | 0.489595 | 1:-74563918 | None:intergenic |
AAGGCACCCGGCCAAGCAAA+AGG | 0.495569 | 1:+74564900 | MsaT004832.1:CDS |
TGTTGCTTGTACTCCTCAAA+AGG | 0.496894 | 1:+74564881 | MsaT004832.1:CDS |
TTCAACCGCTGAATTCGATT+GGG | 0.499606 | 1:+74563972 | MsaT004832.1:CDS |
CCATCTCCACATGCACTGTC+AGG | 0.499632 | 1:-74561131 | None:intergenic |
ATCTCTACCAAAAGATCTAA+GGG | 0.502128 | 1:+74564138 | MsaT004832.1:CDS |
TGTCGTAGATACACTGTCTT+GGG | 0.502526 | 1:-74564781 | None:intergenic |
ACCAGCACTGAATGCACCCC+TGG | 0.503846 | 1:+74561170 | MsaT004832.1:CDS |
TGCCGCTAGGGCAAAATCCA+GGG | 0.511652 | 1:-74561187 | None:intergenic |
AAGAGTTGGAATATTTGCAC+TGG | 0.522066 | 1:+74562850 | MsaT004832.1:CDS |
TTCATTGTATAAAGAATCAA+GGG | 0.526900 | 1:-74564724 | None:intergenic |
TCCAGGGGTGCATTCAGTGC+TGG | 0.531693 | 1:-74561171 | None:intergenic |
AATGGTTTATAAATCTTGCA+AGG | 0.536559 | 1:-74562639 | None:intergenic |
CAGCCAAAAGACCCCACCCT+CGG | 0.537785 | 1:-74562264 | None:intergenic |
ACAAAGTTATTTAAAACTGA+AGG | 0.541788 | 1:+74562241 | MsaT004832.1:CDS |
CTGTCGTAGATACACTGTCT+TGG | 0.543309 | 1:-74564782 | None:intergenic |
ACAAGAAAATGGAATGTCAT+GGG | 0.544715 | 1:+74562821 | MsaT004832.1:CDS |
TGAATGGTTTGGAGGTGCAA+AGG | 0.560782 | 1:+74562916 | MsaT004832.1:CDS |
CTGACAGTGCATGTGGAGAT+GGG | 0.561478 | 1:+74561132 | MsaT004832.1:CDS |
GCAGGAGGATACTTATCTAT+GGG | 0.561610 | 1:+74563410 | MsaT004832.1:intron |
TAAAACTGAAGGCCGAGGGT+GGG | 0.562493 | 1:+74562252 | MsaT004832.1:CDS |
CTACGACAGTAGCAGAGAAG+TGG | 0.567208 | 1:+74564796 | MsaT004832.1:CDS |
GACAAGAAAATGGAATGTCA+TGG | 0.568296 | 1:+74562820 | MsaT004832.1:CDS |
GCATAAGAAGCAGAAGGAGG+AGG | 0.570658 | 1:+74561070 | MsaT004832.1:CDS |
ATATTGCTATATGTGAATGC+AGG | 0.572676 | 1:+74561093 | MsaT004832.1:CDS |
TGTACTCCCAAGATACCAAA+CGG | 0.572794 | 1:+74564053 | MsaT004832.1:CDS |
TATGGGAAGATGATGATGAC+AGG | 0.584972 | 1:+74563427 | MsaT004832.1:CDS |
TTCCTTGGAGCAAAATCTCG+TGG | 0.586918 | 1:+74562974 | MsaT004832.1:CDS |
TTATTTAAAACTGAAGGCCG+AGG | 0.589346 | 1:+74562247 | MsaT004832.1:CDS |
GATGAACTCACGTCAAATGT+TGG | 0.593891 | 1:+74563878 | MsaT004832.1:CDS |
GGCTTCCTGCCTAAAACTCA+AGG | 0.598288 | 1:+74564824 | MsaT004832.1:CDS |
TGCCATTGAAGAACACGAGA+AGG | 0.599044 | 1:+74564755 | MsaT004832.1:CDS |
ACTGAAAGCTGAAGAACCAT+CGG | 0.600098 | 1:+74563931 | MsaT004832.1:CDS |
GTGCAGGCATAAGAAGCAGA+AGG | 0.601872 | 1:+74561064 | MsaT004832.1:intron |
TTAAAACTGAAGGCCGAGGG+TGG | 0.605393 | 1:+74562251 | MsaT004832.1:CDS |
TTTAAAACAGTGGACTCCGA+TGG | 0.605914 | 1:-74563947 | None:intergenic |
GAAAAGAAAAGATGACGCTA+CGG | 0.608952 | 1:+74564698 | MsaT004832.1:CDS |
CTCTACCAAAAGATCTAAGG+GGG | 0.609097 | 1:+74564140 | MsaT004832.1:CDS |
TGTACAGAGTGAACAATCCA+TGG | 0.611538 | 1:+74563901 | MsaT004832.1:CDS |
TCCTTTATATGACTCTGCGG+AGG | 0.618388 | 1:+74563856 | MsaT004832.1:CDS |
TATTTAAAACTGAAGGCCGA+GGG | 0.619845 | 1:+74562248 | MsaT004832.1:CDS |
GCAAAGGTTCGCTGCCTCTG+TGG | 0.623435 | 1:+74562932 | MsaT004832.1:CDS |
GCCGCTAGGGCAAAATCCAG+GGG | 0.626592 | 1:-74561186 | None:intergenic |
ATTCAAAGTAACACTGCTGG+AGG | 0.635490 | 1:+74564108 | MsaT004832.1:CDS |
CAGTTTGTCATTGAATACTG+TGG | 0.640591 | 1:+74562410 | MsaT004832.1:CDS |
CAAGAAAATGGAATGTCATG+GGG | 0.642373 | 1:+74562822 | MsaT004832.1:CDS |
CGGTTGAACATTTAAAACAG+TGG | 0.645180 | 1:-74563957 | None:intergenic |
CATCAATTACGGATTAGATG+AGG | 0.646637 | 1:-74564970 | None:intergenic |
CAGGCATAAGAAGCAGAAGG+AGG | 0.647886 | 1:+74561067 | MsaT004832.1:intron |
GGGATCTTTACCTAATGATG+CGG | 0.651897 | 1:-74559770 | None:intergenic |
GATGATCCTGACAGTGCATG+TGG | 0.654583 | 1:+74561125 | MsaT004832.1:CDS |
TTGATCCCAATCGAATTCAG+CGG | 0.659698 | 1:-74563977 | None:intergenic |
AACATTTGAGCGCACCACAG+AGG | 0.676482 | 1:-74562946 | None:intergenic |
TGTACTCCTCAAAAGGCACC+CGG | 0.683773 | 1:+74564888 | MsaT004832.1:CDS |
TCTCTACCAAAAGATCTAAG+GGG | 0.690458 | 1:+74564139 | MsaT004832.1:CDS |
TCTACCAAAAGATCTAAGGG+GGG | 0.693195 | 1:+74564141 | MsaT004832.1:CDS |
AAGAAAATGGAATGTCATGG+GGG | 0.698806 | 1:+74562823 | MsaT004832.1:CDS |
AATTCCTTTATATGACTCTG+CGG | 0.704826 | 1:+74563853 | MsaT004832.1:CDS |
TTCCTGCCTAAAACTCAAGG+CGG | 0.738527 | 1:+74564827 | MsaT004832.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 74559756 | 74564986 | 74559756 | ID=MsaG004832 |
Chr1 | mRNA | 74559756 | 74564986 | 74559756 | ID=MsaT004832.1;Parent=MsaG004832 |
Chr1 | exon | 74559756 | 74559781 | 74559756 | ID=MsaT004832.1.exon1;Parent=MsaT004832.1 |
Chr1 | CDS | 74559756 | 74559781 | 74559756 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Chr1 | exon | 74561070 | 74561226 | 74561070 | ID=MsaT004832.1.exon2;Parent=MsaT004832.1 |
Chr1 | CDS | 74561070 | 74561226 | 74561070 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Chr1 | exon | 74562214 | 74562300 | 74562214 | ID=MsaT004832.1.exon3;Parent=MsaT004832.1 |
Chr1 | CDS | 74562214 | 74562300 | 74562214 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Chr1 | exon | 74562404 | 74562488 | 74562404 | ID=MsaT004832.1.exon4;Parent=MsaT004832.1 |
Chr1 | CDS | 74562404 | 74562488 | 74562404 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Chr1 | exon | 74562572 | 74562665 | 74562572 | ID=MsaT004832.1.exon5;Parent=MsaT004832.1 |
Chr1 | CDS | 74562572 | 74562665 | 74562572 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Chr1 | exon | 74562805 | 74563003 | 74562805 | ID=MsaT004832.1.exon6;Parent=MsaT004832.1 |
Chr1 | CDS | 74562805 | 74563003 | 74562805 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Chr1 | exon | 74563414 | 74563448 | 74563414 | ID=MsaT004832.1.exon7;Parent=MsaT004832.1 |
Chr1 | CDS | 74563414 | 74563448 | 74563414 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Chr1 | exon | 74563838 | 74564007 | 74563838 | ID=MsaT004832.1.exon8;Parent=MsaT004832.1 |
Chr1 | CDS | 74563838 | 74564007 | 74563838 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Chr1 | exon | 74564052 | 74564196 | 74564052 | ID=MsaT004832.1.exon9;Parent=MsaT004832.1 |
Chr1 | CDS | 74564052 | 74564196 | 74564052 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Chr1 | exon | 74564686 | 74564986 | 74564686 | ID=MsaT004832.1.exon10;Parent=MsaT004832.1 |
Chr1 | CDS | 74564686 | 74564986 | 74564686 | ID=cds.MsaT004832.1;Parent=MsaT004832.1 |
Gene Sequence |
Protein sequence |