AlfalfaGEDB | MsaG004860

M. sativa ssp. caerulea / MsaG004860

KEGG: K08819
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004860	XP_003592062.2	96.075	586	11	3	1	575	1	585	0.0	1154

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004860	sp\|Q9ZVM9\|Y1461_ARATH	51.908	393	166	7	95	473	89	472	3.51e-132	400

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004860	tr\|G7IBV9\|G7IBV9_MEDTR	96.075	586	11	3	1	575	1	585	0.0	1154

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000062	MsaG004860	0.800169	2.732746e-48	3.708808e-46
MsaG000070	MsaG004860	0.817550	5.416484e-52	1.117504e-49
MsaG000083	MsaG004860	0.871770	1.085728e-66	1.356468e-63
MsaG000113	MsaG004860	0.856346	6.644915e-62	4.508490e-59
MsaG000151	MsaG004860	0.850144	3.908587e-60	2.128576e-57
MsaG000153	MsaG004860	0.852284	9.785431e-61	5.741445e-58
MsaG000188	MsaG004860	0.820388	1.234333e-52	2.742811e-50
MsaG000213	MsaG004860	0.864006	3.301040e-64	2.997412e-61
MsaG000218	MsaG004860	0.800050	2.888293e-48	3.909556e-46
MsaG000235	MsaG004860	0.835391	3.145395e-56	1.065972e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004860	MtrunA17_Chr1g0201571	96.075	586	11	3	1	575	1	585	0.0	1154
MsaG004860	MtrunA17_Chr2g0286421	52.764	398	165	7	90	473	68	456	1.99e-140	417
MsaG004860	MtrunA17_Chr7g0273601	51.332	413	175	8	75	473	61	461	1.80e-137	411
MsaG004860	MtrunA17_Chr4g0066691	55.923	363	138	6	90	439	70	423	3.02e-137	410
MsaG004860	MtrunA17_Chr1g0191221	57.593	349	131	5	75	411	76	419	3.22e-137	411
MsaG004860	MtrunA17_Chr3g0131861	57.345	354	129	6	100	440	73	417	3.27e-137	410
MsaG004860	MtrunA17_Chr2g0324461	54.722	360	138	6	95	442	112	458	6.35e-135	408
MsaG004860	MtrunA17_Chr2g0317501	52.727	385	154	7	95	467	105	473	1.59e-134	408
MsaG004860	MtrunA17_Chr8g0383451	51.542	454	185	7	131	564	4	442	4.60e-134	399
MsaG004860	MtrunA17_Chr8g0385971	54.674	353	138	6	101	440	67	410	2.37e-129	390

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004860	AT4G10010.2	55.840	351	130	6	97	435	129	466	3.81e-135	408
MsaG004860	AT1G54610.1	51.908	393	166	7	95	473	89	472	3.57e-133	400
MsaG004860	AT1G54610.3	51.908	393	166	7	95	473	89	472	3.57e-133	400
MsaG004860	AT1G54610.2	51.908	393	166	7	95	473	89	472	3.57e-133	400
MsaG004860	AT1G53050.2	49.633	409	172	8	97	488	107	498	4.56e-132	402
MsaG004860	AT1G53050.1	49.633	409	172	8	97	488	107	498	4.56e-132	402
MsaG004860	AT1G71530.2	55.043	347	131	6	101	435	124	457	1.49e-131	392
MsaG004860	AT5G44290.7	53.611	360	146	5	96	443	109	459	6.47e-131	392
MsaG004860	AT1G71530.1	54.190	358	142	6	101	445	124	472	8.64e-131	397
MsaG004860	AT5G50860.2	51.622	370	157	6	99	455	89	449	1.77e-130	391

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Find 118 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTTGAAAAGGGGA+AGG	0.607082	1:+74872340	MsaT004860.1:CDS
AAAAGACCTAAAGAAGATGG+GGG	0.688327	1:-74874345	None:intergenic
AAAGCTCTAGATCGAGACAC+TGG	0.607518	1:+74873320	MsaT004860.1:CDS
AAAGGAATTCCAATCATGCC+TGG	0.500566	1:+74873947	MsaT004860.1:CDS
AAAGTAGTTGATGGCAATGG+TGG	0.648465	1:+74872404	MsaT004860.1:CDS
AAAGTCTTATAGACCAAGTC+TGG	0.466424	1:+74874302	MsaT004860.1:CDS
AAGAAATGGAGAGAGAAATA+GGG	0.407964	1:-74875501	None:intergenic
AAGACCAGCCTCTCACAAAC+AGG	0.394459	1:+74873819	MsaT004860.1:CDS
AATACCAACTCCATAATTGG+TGG	0.612951	1:-74873885	None:intergenic
AATCAAGATATTACAGAGAT+TGG	0.361522	1:+74873414	MsaT004860.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	74872209	74875733	74872209	ID=MsaG004860
Chr1	mRNA	74872209	74875733	74872209	ID=MsaT004860.1;Parent=MsaG004860
Chr1	exon	74872209	74872598	74872209	ID=MsaT004860.1.exon1;Parent=MsaT004860.1
Chr1	CDS	74872209	74872598	74872209	ID=cds.MsaT004860.1;Parent=MsaT004860.1
Chr1	exon	74873290	74873363	74873290	ID=MsaT004860.1.exon2;Parent=MsaT004860.1
Chr1	CDS	74873290	74873363	74873290	ID=cds.MsaT004860.1;Parent=MsaT004860.1
Chr1	exon	74873393	74873573	74873393	ID=MsaT004860.1.exon3;Parent=MsaT004860.1
Chr1	CDS	74873393	74873573	74873393	ID=cds.MsaT004860.1;Parent=MsaT004860.1
Chr1	exon	74873659	74873979	74873659	ID=MsaT004860.1.exon4;Parent=MsaT004860.1
Chr1	CDS	74873659	74873979	74873659	ID=cds.MsaT004860.1;Parent=MsaT004860.1
Chr1	exon	74874210	74874431	74874210	ID=MsaT004860.1.exon5;Parent=MsaT004860.1
Chr1	CDS	74874210	74874431	74874210	ID=cds.MsaT004860.1;Parent=MsaT004860.1
Chr1	exon	74874899	74874993	74874899	ID=MsaT004860.1.exon6;Parent=MsaT004860.1
Chr1	CDS	74874899	74874993	74874899	ID=cds.MsaT004860.1;Parent=MsaT004860.1
Chr1	exon	74875195	74875294	74875195	ID=MsaT004860.1.exon7;Parent=MsaT004860.1
Chr1	CDS	74875195	74875294	74875195	ID=cds.MsaT004860.1;Parent=MsaT004860.1
Chr1	exon	74875389	74875733	74875389	ID=MsaT004860.1.exon8;Parent=MsaT004860.1
Chr1	CDS	74875389	74875733	74875389	ID=cds.MsaT004860.1;Parent=MsaT004860.1

Gene Sequence

>MsaT004860.1

ATGGGCTGTGTTCAAGCCAAACCATTAGAATCTGAAGCTAACTATAGTGGACTAGACAGGTTCAAAATGGAAAATGGGTATGTTCCAAGTTCTGATTTTGTTGCACACAGAAGATCTACTGGTCAAAGTCAAAAACATGTTGAAAAGGGGAAGGATATTGATCATCATGTGCATCAGAGACAGCCCAGAAAGCATAAAGTAGTTGATGGCAATGGTGGTGGAAGAGGAAAGAGAGATGCTGAGTTGAAAGATAGTAAGAAGCAGTTGAATAGGTGTTTTGATGATGAGATGGTGGATGGTTGGCCTAAATGGTTGGTTGATAATGTTCCTTCTCAAGTGTTGGCTAGTGTTGTTGCCAAGAGTGCTGAGTCTTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTAGATCGAGACACTGGAGATATTGTGGCCCTCAAAAGCATTAAATTCATGGCAAGAGAAATCAAGATATTACAGAGATTGGATCATCCTAATGTAGTAAAACTTAAAGGGTTAGCGACTTCAAGAATGCAGTACAGCATATATCTAGTTTTTGATTTCATGCCAACAGATTTGTCAAGAATTATTTCTCGGCCTGGAGAAAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTTCAGCATTGCCATGATAGAGGAATTTTGCATCGAGATATAAAAGGGTCAAATCTTTTGATAGATAAAAATGGGATGCTTCAGATTGCCGATTTTGGACTTGCCAATTATTATAGTCCAAATCAAGAAGACCAGCCTCTCACAAACAGGGTTGTGACGCTATGGTACAGAGCTCCTGAATTGTTGTTAGGTTCCACCAATTATGGAGTTGGTATTGATCTATGGAGTGTTGGATGTCTCCTTGCAGAAATGTTTAAAGGAATTCCAATCATGCCTGGAAGAACAGAGGTTGAGCAACTTCATAGAATTTTTAGGTTATGTGGCACACCGTCACAAGAGTATTGGAGAAAGCTGAAACTTTCTACAACTTTTGTACCTCCAAAGTCTTATAGACCAAGTCTGGTAGAAACTTTCAACGATCTGCCCCCATCTTCTTTAGGTCTTTTATGTACTCTTCTTGCTTTGGATCCTGCATTCCGTGGCAGTGCGTCTAAAGCTCTTAAAAATCCGTTTTTCTTTACAAGCCCATTGGCTTGTGATCTATCTGGTCTGCCTGCAATCTACAAAGAAGAAGATGAGCATACTCCAGCTAAAGAACAGATAAAGTATATTAACTCTAAAATCAGGCGTTCTCGTACATTTATGGAGCGTCGCAAGAATTTAGCATCTAATAGGCCAATAGAACATACTGTATCCTCTAAAGAGGTATTGAGAAGTAATGCTGAGGCTGAAACATATGTTCCAAGTGAAGAACCAGGTAGTGCAACAAGTAGTACTTCATCTAGTGTAAATCAAGCTGTTGTTGGGGACCACTCACCCCTATTTCTCTCTCCATTTCTTGGTTCTGATCAAAAGCAGCCCCACAAAATCCATAGTAGGCGTGCAAATATTGGAGAAAAAAACATCAAGAACCTTCCTCCATTATCCAAGCCAAAGCCAAATGCAACCAAGAAAGATGATGGCAGATACAGAACAGACCAGATTTTCAGGTCCACTTCCACCAGAGAATTTAGAAAGTTAAAAACAGAAGAACATTTACTCTTTGATTAG

Protein sequence

>MsaT004860.1

MGCVQAKPLESEANYSGLDRFKMENGYVPSSDFVAHRRSTGQSQKHVEKGKDIDHHVHQRQPRKHKVVDGNGGGRGKRDAELKDSKKQLNRCFDDEMVDGWPKWLVDNVPSQVLASVVAKSAESYKMIDKVGQGTYSNVYKALDRDTGDIVALKSIKFMAREIKILQRLDHPNVVKLKGLATSRMQYSIYLVFDFMPTDLSRIISRPGERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLQIADFGLANYYSPNQEDQPLTNRVVTLWYRAPELLLGSTNYGVGIDLWSVGCLLAEMFKGIPIMPGRTEVEQLHRIFRLCGTPSQEYWRKLKLSTTFVPPKSYRPSLVETFNDLPPSSLGLLCTLLALDPAFRGSASKALKNPFFFTSPLACDLSGLPAIYKEEDEHTPAKEQIKYINSKIRRSRTFMERRKNLASNRPIEHTVSSKEVLRSNAEAETYVPSEEPGSATSSTSSSVNQAVVGDHSPLFLSPFLGSDQKQPHKIHSRRANIGEKNIKNLPPLSKPKPNATKKDDGRYRTDQIFRSTSTREFRKLKTEEHLLFD*