Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004865 | XP_024641918.1 | 98.035 | 458 | 8 | 1 | 1 | 457 | 22 | 479 | 0.0 | 920 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004865 | sp|Q84WW6|ASHH1_ARATH | 64.579 | 463 | 148 | 6 | 2 | 449 | 28 | 489 | 0.0 | 590 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004865 | tr|A0A396JTL7|A0A396JTL7_MEDTR | 98.035 | 458 | 8 | 1 | 1 | 457 | 22 | 479 | 0.0 | 920 |
Gene ID | Type | Classification |
---|---|---|
MsaG004865 | TR | SET |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004865 | MtrunA17_Chr1g0201621 | 98.035 | 458 | 8 | 1 | 1 | 457 | 22 | 479 | 0.0 | 920 |
MsaG004865 | MtrunA17_Chr1g0201311 | 96.725 | 458 | 14 | 1 | 1 | 457 | 22 | 479 | 0.0 | 910 |
MsaG004865 | MtrunA17_Chr3g0125251 | 42.152 | 223 | 126 | 3 | 2 | 223 | 1264 | 1484 | 9.30e-54 | 194 |
MsaG004865 | MtrunA17_Chr1g0201321 | 97.590 | 83 | 1 | 1 | 250 | 331 | 1 | 83 | 3.98e-48 | 159 |
MsaG004865 | MtrunA17_Chr6g0477001 | 43.842 | 203 | 111 | 3 | 3 | 205 | 54 | 253 | 2.39e-45 | 160 |
MsaG004865 | MtrunA17_Chr2g0305371 | 37.624 | 202 | 122 | 3 | 26 | 227 | 299 | 496 | 5.10e-36 | 139 |
MsaG004865 | MtrunA17_Chr2g0297191 | 40.323 | 124 | 73 | 1 | 75 | 198 | 1044 | 1166 | 2.56e-23 | 103 |
MsaG004865 | MtrunA17_Chr5g0403241 | 35.503 | 169 | 94 | 2 | 45 | 198 | 1334 | 1502 | 3.72e-23 | 103 |
MsaG004865 | MtrunA17_Chr4g0075321 | 34.706 | 170 | 92 | 3 | 46 | 198 | 892 | 1059 | 4.80e-23 | 102 |
MsaG004865 | MtrunA17_Chr8g0354821 | 32.836 | 201 | 97 | 6 | 40 | 203 | 489 | 688 | 4.73e-21 | 96.3 |
MsaG004865 | MtrunA17_Chr5g0401921 | 36.095 | 169 | 92 | 3 | 21 | 182 | 672 | 831 | 4.83e-21 | 96.7 |
MsaG004865 | MtrunA17_Chr7g0235081 | 39.844 | 128 | 70 | 1 | 64 | 184 | 195 | 322 | 6.80e-21 | 93.6 |
MsaG004865 | MtrunA17_Chr8g0347071 | 36.424 | 151 | 92 | 3 | 55 | 202 | 799 | 948 | 4.05e-20 | 93.6 |
MsaG004865 | MtrunA17_Chr3g0126701 | 36.242 | 149 | 91 | 3 | 57 | 202 | 915 | 1062 | 4.15e-20 | 93.6 |
MsaG004865 | MtrunA17_Chr5g0399801 | 34.343 | 198 | 92 | 8 | 40 | 202 | 894 | 1088 | 5.39e-20 | 93.6 |
MsaG004865 | MtrunA17_Chr8g0373821 | 34.337 | 166 | 95 | 3 | 46 | 198 | 369 | 533 | 7.22e-20 | 92.4 |
MsaG004865 | MtrunA17_Chr7g0275611 | 38.158 | 152 | 88 | 4 | 55 | 202 | 814 | 963 | 8.58e-20 | 92.8 |
MsaG004865 | MtrunA17_Chr7g0221611 | 36.943 | 157 | 89 | 3 | 69 | 224 | 911 | 1058 | 1.04e-19 | 92.4 |
MsaG004865 | MtrunA17_Chr7g0255181 | 32.065 | 184 | 103 | 5 | 40 | 202 | 522 | 704 | 1.57e-19 | 91.7 |
MsaG004865 | MtrunA17_Chr1g0147121 | 35.762 | 151 | 93 | 3 | 55 | 202 | 884 | 1033 | 1.81e-19 | 91.7 |
MsaG004865 | MtrunA17_Chr4g0003511 | 31.658 | 199 | 90 | 7 | 40 | 199 | 857 | 1048 | 6.21e-19 | 90.1 |
MsaG004865 | MtrunA17_Chr1g0194631 | 36.923 | 130 | 80 | 1 | 52 | 181 | 599 | 726 | 7.53e-19 | 89.7 |
MsaG004865 | MtrunA17_Chr1g0170651 | 37.107 | 159 | 77 | 7 | 54 | 199 | 394 | 542 | 1.61e-18 | 88.2 |
MsaG004865 | MtrunA17_Chr1g0149581 | 35.461 | 141 | 86 | 2 | 67 | 202 | 1525 | 1665 | 2.30e-18 | 88.6 |
MsaG004865 | MtrunA17_Chr1g0149611 | 35.461 | 141 | 86 | 2 | 67 | 202 | 367 | 507 | 2.35e-18 | 87.4 |
MsaG004865 | MtrunA17_Chr4g0003501 | 31.606 | 193 | 96 | 7 | 40 | 199 | 762 | 951 | 1.35e-17 | 85.9 |
MsaG004865 | MtrunA17_Chr3g0080761 | 31.980 | 197 | 95 | 7 | 40 | 198 | 464 | 659 | 5.46e-17 | 83.6 |
MsaG004865 | MtrunA17_Chr6g0460921 | 32.667 | 150 | 85 | 4 | 46 | 179 | 247 | 396 | 7.00e-15 | 76.3 |
MsaG004865 | MtrunA17_Chr7g0270001 | 36.697 | 109 | 67 | 1 | 74 | 182 | 159 | 265 | 3.97e-14 | 72.8 |
MsaG004865 | MtrunA17_Chr7g0232981 | 28.788 | 198 | 100 | 8 | 16 | 182 | 301 | 488 | 8.45e-14 | 73.6 |
MsaG004865 | MtrunA17_Chr1g0183321 | 29.050 | 179 | 95 | 6 | 46 | 198 | 569 | 741 | 3.02e-13 | 72.0 |
MsaG004865 | MtrunA17_Chr7g0252211 | 30.198 | 202 | 101 | 7 | 40 | 202 | 556 | 756 | 4.68e-13 | 71.6 |
MsaG004865 | MtrunA17_Chr6g0476121 | 30.198 | 202 | 101 | 7 | 40 | 202 | 442 | 642 | 1.23e-11 | 67.0 |
MsaG004865 | MtrunA17_Chr7g0262001 | 28.324 | 173 | 104 | 5 | 46 | 198 | 525 | 697 | 7.13e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004865 | AT1G76710.2 | 64.579 | 463 | 148 | 6 | 2 | 449 | 28 | 489 | 0.0 | 590 |
MsaG004865 | AT1G76710.1 | 64.579 | 463 | 148 | 6 | 2 | 449 | 28 | 489 | 0.0 | 590 |
MsaG004865 | AT1G76710.4 | 63.347 | 472 | 148 | 7 | 2 | 449 | 28 | 498 | 0.0 | 582 |
MsaG004865 | AT1G76710.3 | 61.020 | 490 | 148 | 7 | 2 | 449 | 28 | 516 | 0.0 | 575 |
MsaG004865 | AT1G77300.2 | 42.222 | 225 | 122 | 4 | 2 | 223 | 966 | 1185 | 1.28e-54 | 197 |
MsaG004865 | AT1G77300.1 | 42.222 | 225 | 122 | 4 | 2 | 223 | 966 | 1185 | 1.35e-54 | 197 |
MsaG004865 | AT4G30860.1 | 41.667 | 180 | 101 | 3 | 28 | 207 | 294 | 469 | 7.48e-36 | 139 |
MsaG004865 | AT3G59960.3 | 43.503 | 177 | 78 | 4 | 46 | 205 | 81 | 252 | 1.15e-34 | 131 |
MsaG004865 | AT3G59960.2 | 43.503 | 177 | 78 | 4 | 46 | 205 | 81 | 252 | 1.15e-34 | 131 |
MsaG004865 | AT3G59960.4 | 43.503 | 177 | 78 | 4 | 46 | 205 | 81 | 252 | 1.15e-34 | 131 |
MsaG004865 | AT3G59960.1 | 42.775 | 173 | 85 | 2 | 46 | 205 | 81 | 252 | 6.58e-34 | 130 |
MsaG004865 | AT2G44150.1 | 41.618 | 173 | 87 | 2 | 46 | 205 | 86 | 257 | 1.68e-33 | 130 |
MsaG004865 | AT5G42400.7 | 42.742 | 124 | 70 | 1 | 75 | 198 | 1261 | 1383 | 2.62e-25 | 110 |
MsaG004865 | AT5G42400.2 | 42.742 | 124 | 70 | 1 | 75 | 198 | 1261 | 1383 | 2.62e-25 | 110 |
MsaG004865 | AT5G42400.8 | 42.742 | 124 | 70 | 1 | 75 | 198 | 1261 | 1383 | 2.62e-25 | 110 |
MsaG004865 | AT5G42400.5 | 42.742 | 124 | 70 | 1 | 75 | 198 | 1261 | 1383 | 2.62e-25 | 110 |
MsaG004865 | AT5G42400.4 | 42.742 | 124 | 70 | 1 | 75 | 198 | 1261 | 1383 | 2.62e-25 | 110 |
MsaG004865 | AT5G42400.1 | 42.742 | 124 | 70 | 1 | 75 | 198 | 1261 | 1383 | 2.62e-25 | 110 |
MsaG004865 | AT5G42400.3 | 42.742 | 124 | 70 | 1 | 75 | 198 | 1261 | 1383 | 2.62e-25 | 110 |
MsaG004865 | AT5G42400.6 | 42.742 | 124 | 70 | 1 | 75 | 198 | 1261 | 1383 | 2.62e-25 | 110 |
MsaG004865 | AT1G05830.2 | 36.257 | 171 | 96 | 5 | 47 | 213 | 900 | 1061 | 5.60e-21 | 97.1 |
MsaG004865 | AT1G05830.4 | 36.257 | 171 | 96 | 5 | 47 | 213 | 900 | 1061 | 5.60e-21 | 97.1 |
MsaG004865 | AT1G05830.1 | 36.257 | 171 | 96 | 5 | 47 | 213 | 900 | 1061 | 5.60e-21 | 97.1 |
MsaG004865 | AT1G05830.3 | 36.257 | 171 | 96 | 5 | 47 | 213 | 900 | 1061 | 5.60e-21 | 97.1 |
MsaG004865 | AT2G35160.2 | 35.795 | 176 | 87 | 8 | 40 | 199 | 625 | 790 | 8.06e-21 | 96.3 |
MsaG004865 | AT2G35160.3 | 35.795 | 176 | 87 | 8 | 40 | 199 | 625 | 790 | 8.06e-21 | 96.3 |
MsaG004865 | AT2G35160.1 | 35.795 | 176 | 87 | 8 | 40 | 199 | 625 | 790 | 8.06e-21 | 96.3 |
MsaG004865 | AT2G35160.4 | 35.795 | 176 | 87 | 8 | 40 | 199 | 625 | 790 | 8.06e-21 | 96.3 |
MsaG004865 | AT2G35160.5 | 35.795 | 176 | 87 | 8 | 40 | 199 | 589 | 754 | 8.46e-21 | 95.9 |
MsaG004865 | AT3G03750.2 | 36.667 | 180 | 94 | 6 | 38 | 198 | 167 | 345 | 2.64e-20 | 92.4 |
MsaG004865 | AT4G27910.1 | 36.424 | 151 | 92 | 3 | 55 | 202 | 877 | 1026 | 2.78e-20 | 94.7 |
MsaG004865 | AT1G02580.1 | 33.728 | 169 | 95 | 3 | 27 | 190 | 518 | 674 | 4.62e-20 | 93.6 |
MsaG004865 | AT2G23740.3 | 37.255 | 153 | 75 | 4 | 45 | 179 | 1206 | 1355 | 6.29e-20 | 93.6 |
MsaG004865 | AT2G23740.6 | 37.255 | 153 | 75 | 4 | 45 | 179 | 1206 | 1355 | 6.29e-20 | 93.6 |
MsaG004865 | AT2G23740.2 | 37.255 | 153 | 75 | 4 | 45 | 179 | 1206 | 1355 | 6.29e-20 | 93.6 |
MsaG004865 | AT2G23740.1 | 37.255 | 153 | 75 | 4 | 45 | 179 | 1199 | 1348 | 6.80e-20 | 93.6 |
MsaG004865 | AT2G23380.1 | 38.168 | 131 | 79 | 1 | 52 | 182 | 741 | 869 | 7.31e-20 | 93.2 |
MsaG004865 | AT2G23380.2 | 38.168 | 131 | 79 | 1 | 52 | 182 | 514 | 642 | 1.21e-19 | 92.4 |
MsaG004865 | AT3G61740.2 | 37.255 | 153 | 89 | 4 | 55 | 202 | 831 | 981 | 1.94e-19 | 92.0 |
MsaG004865 | AT3G61740.1 | 37.255 | 153 | 89 | 4 | 55 | 202 | 867 | 1017 | 2.21e-19 | 92.0 |
MsaG004865 | AT2G31650.1 | 35.673 | 171 | 97 | 5 | 47 | 213 | 879 | 1040 | 4.37e-19 | 90.9 |
MsaG004865 | AT4G02020.1 | 36.154 | 130 | 81 | 1 | 52 | 181 | 696 | 823 | 3.10e-18 | 88.2 |
MsaG004865 | AT5G53430.1 | 35.099 | 151 | 94 | 3 | 55 | 202 | 893 | 1042 | 4.00e-18 | 88.2 |
MsaG004865 | AT5G04940.2 | 30.653 | 199 | 101 | 7 | 40 | 203 | 474 | 670 | 3.37e-17 | 84.7 |
MsaG004865 | AT5G04940.1 | 30.653 | 199 | 101 | 7 | 40 | 203 | 474 | 670 | 3.37e-17 | 84.7 |
MsaG004865 | AT2G22740.2 | 32.512 | 203 | 96 | 8 | 37 | 202 | 591 | 789 | 1.99e-16 | 82.4 |
MsaG004865 | AT2G22740.1 | 32.512 | 203 | 96 | 8 | 37 | 202 | 591 | 789 | 1.99e-16 | 82.4 |
MsaG004865 | AT1G17770.1 | 32.105 | 190 | 93 | 8 | 44 | 198 | 500 | 688 | 2.37e-16 | 82.0 |
MsaG004865 | AT2G24740.1 | 28.796 | 191 | 100 | 6 | 48 | 203 | 566 | 755 | 1.20e-14 | 77.0 |
MsaG004865 | AT2G23740.4 | 39.286 | 112 | 51 | 3 | 45 | 142 | 1206 | 1314 | 3.08e-14 | 75.9 |
MsaG004865 | AT2G23740.5 | 39.286 | 112 | 51 | 3 | 45 | 142 | 1206 | 1314 | 3.08e-14 | 75.9 |
MsaG004865 | AT3G04380.4 | 28.261 | 184 | 94 | 7 | 46 | 200 | 285 | 459 | 2.24e-12 | 69.3 |
MsaG004865 | AT3G04380.1 | 28.261 | 184 | 94 | 7 | 46 | 200 | 285 | 459 | 2.36e-12 | 69.3 |
MsaG004865 | AT3G04380.2 | 28.261 | 184 | 94 | 7 | 46 | 200 | 258 | 432 | 2.64e-12 | 68.9 |
MsaG004865 | AT3G04380.3 | 28.261 | 184 | 94 | 7 | 46 | 200 | 269 | 443 | 2.92e-12 | 68.9 |
MsaG004865 | AT3G04380.6 | 28.261 | 184 | 94 | 7 | 46 | 200 | 258 | 432 | 2.94e-12 | 68.9 |
MsaG004865 | AT3G04380.5 | 28.261 | 184 | 94 | 7 | 46 | 200 | 242 | 416 | 3.45e-12 | 68.6 |
Find 101 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGCCGAGGGTGGGGTCTTT+TGG | 0.223348 | 1:-74921550 | MsaT004865.1:CDS |
GACCTTGAGTTTCATAAGTA+TGG | 0.226901 | 1:+74921342 | None:intergenic |
TTTGGCTGATGAGGAAATTA+AGG | 0.256975 | 1:-74921532 | MsaT004865.1:intron |
GTGCTTCCTTTGATGCTAAA+AGG | 0.263819 | 1:+74919553 | None:intergenic |
GAAGATCCTGTTTGGTATCT+TGG | 0.294712 | 1:+74919706 | None:intergenic |
CAAGATTTATAAACCATTCC+TGG | 0.303845 | 1:-74921168 | MsaT004865.1:intron |
ATTCAACCACTGAATTCAAT+TGG | 0.332627 | 1:-74919795 | MsaT004865.1:CDS |
GCACTGGAAGATATTCCTAT+TGG | 0.334570 | 1:-74920947 | MsaT004865.1:CDS |
CAAACTGTGAGACAAGAAAA+TGG | 0.346413 | 1:-74921003 | MsaT004865.1:CDS |
AGCAGGAGGATACTTATCTA+TGG | 0.346424 | 1:-74920356 | MsaT004865.1:intron |
AAGATCCTGTTTGGTATCTT+GGG | 0.359715 | 1:+74919707 | None:intergenic |
GCTTGGCCGGGTGCCCTTTG+AGG | 0.389466 | 1:+74918873 | None:intergenic |
ATCCTTCTCGTGTTCTTCAA+TGG | 0.405165 | 1:+74919010 | None:intergenic |
CTGAATTCAATTGGGATCAA+TGG | 0.406898 | 1:-74919786 | MsaT004865.1:CDS |
ATTCTTTATACAATGAAATA+CGG | 0.412721 | 1:-74919037 | MsaT004865.1:CDS |
TCCTCCGCAGAGTCATATAA+AGG | 0.419793 | 1:+74919909 | None:intergenic |
CCCGACAGTGCCTGTGGAGA+TGG | 0.424956 | 1:-74922326 | MsaT004865.1:CDS |
CTCAAATGTTCTGAATTCCT+TGG | 0.432418 | 1:-74920854 | MsaT004865.1:CDS |
ATGCCACAAGGGCAAAATCC+AGG | 0.434511 | 1:+74922269 | None:intergenic |
TTTCATTGTATAAAGAATCA+AGG | 0.435719 | 1:+74919042 | None:intergenic |
TTCTCGTGTTCTTCAATGGC+AGG | 0.436989 | 1:+74919014 | None:intergenic |
ATCTCTACCAAAAGATCAAA+GGG | 0.444160 | 1:-74919630 | MsaT004865.1:CDS |
TATTCCTATTGGAACTGAAC+TGG | 0.465129 | 1:-74920936 | MsaT004865.1:CDS |
ATAAGTATGGGATCTGCGCT+TGG | 0.465834 | 1:+74921355 | None:intergenic |
AGTAGCAGAGAAGTGGATAC+AGG | 0.474675 | 1:-74918964 | MsaT004865.1:CDS |
TTGAAGAGGTTTACCAGGAA+TGG | 0.476963 | 1:+74921155 | None:intergenic |
ACCAGCACTGAATGCACCCC+TGG | 0.480052 | 1:-74922287 | MsaT004865.1:CDS |
TATGCCAGTTCAGTTCCAAT+AGG | 0.481653 | 1:+74920932 | None:intergenic |
TCAATTGGGATCAATGGCTT+AGG | 0.484206 | 1:-74919780 | MsaT004865.1:CDS |
AAAACTGAAGGCCGAGGGTG+GGG | 0.484563 | 1:-74921558 | MsaT004865.1:CDS |
ACCTTGAGTTTCATAAGTAT+GGG | 0.487157 | 1:+74921343 | None:intergenic |
TTCAACCACTGAATTCAATT+GGG | 0.488608 | 1:-74919794 | MsaT004865.1:CDS |
AGCTTTCAGTATAATAGCCA+TGG | 0.489595 | 1:+74919848 | None:intergenic |
TCTATCGATGCAACTAGAAA+AGG | 0.490560 | 1:-74921199 | MsaT004865.1:CDS |
AGGGCACCCGGCCAAGCAAA+AGG | 0.495569 | 1:-74918867 | MsaT004865.1:CDS |
TGTCGTAGATACACTGTCTT+GGG | 0.502526 | 1:+74918986 | None:intergenic |
CCATCTCCACAGGCACTGTC+GGG | 0.506283 | 1:+74922326 | None:intergenic |
CCCATCTCCACAGGCACTGT+CGG | 0.518933 | 1:+74922325 | None:intergenic |
ACCAAGTTATTTAAAACTGA+AGG | 0.520954 | 1:-74921570 | MsaT004865.1:CDS |
AAGAGTTGGAATATTTGCAC+TGG | 0.522066 | 1:-74920963 | MsaT004865.1:CDS |
CCGACAGTGCCTGTGGAGAT+GGG | 0.523601 | 1:-74922325 | MsaT004865.1:CDS |
TTCATTGTATAAAGAATCAA+GGG | 0.526900 | 1:+74919043 | None:intergenic |
TCCAGGGGTGCATTCAGTGC+TGG | 0.526955 | 1:+74922286 | None:intergenic |
TGTTGCTTGTACTCCTCAAA+GGG | 0.529187 | 1:-74918886 | MsaT004865.1:CDS |
ATGTTGCTTGTACTCCTCAA+AGG | 0.530019 | 1:-74918887 | MsaT004865.1:CDS |
TGCCACAAGGGCAAAATCCA+GGG | 0.530653 | 1:+74922270 | None:intergenic |
AATGGTTTATAAATCTTGCA+AGG | 0.536559 | 1:+74921173 | None:intergenic |
CAGCCAAAAGACCCCACCCT+CGG | 0.537785 | 1:+74921547 | None:intergenic |
CATCTCTACCAAAAGATCAA+AGG | 0.539479 | 1:-74919631 | MsaT004865.1:CDS |
CGCATTCGAAGTAACACTGC+AGG | 0.543043 | 1:-74919663 | MsaT004865.1:CDS |
CTGTCGTAGATACACTGTCT+TGG | 0.543309 | 1:+74918985 | None:intergenic |
ACAAGAAAATGGAATGTCAT+GGG | 0.544715 | 1:-74920992 | MsaT004865.1:CDS |
ATTGATGCAAAGTATGCAGC+TGG | 0.547593 | 1:-74919576 | MsaT004865.1:CDS |
TTTAGCATCAAAGGAAGCAC+AGG | 0.547737 | 1:-74919550 | MsaT004865.1:CDS |
TGAATGGTTTGGAGGTGCAA+AGG | 0.560782 | 1:-74920897 | MsaT004865.1:CDS |
GCAGGAGGATACTTATCTAT+GGG | 0.561610 | 1:-74920355 | MsaT004865.1:intron |
TAAAACTGAAGGCCGAGGGT+GGG | 0.562493 | 1:-74921559 | MsaT004865.1:CDS |
CTACGACAGTAGCAGAGAAG+TGG | 0.567208 | 1:-74918971 | MsaT004865.1:CDS |
AGCATCAAAGGAAGCACAGG+AGG | 0.568189 | 1:-74919547 | MsaT004865.1:CDS |
GACAAGAAAATGGAATGTCA+TGG | 0.568296 | 1:-74920993 | MsaT004865.1:CDS |
TTGATCCCAATTGAATTCAG+TGG | 0.569284 | 1:+74919789 | None:intergenic |
GCATAAGAAGCAGAAGGAGG+AGG | 0.570658 | 1:-74922387 | MsaT004865.1:CDS |
GTACTCCCAAGATACCAAAC+AGG | 0.572352 | 1:-74919712 | MsaT004865.1:CDS |
ATATTGCTATATGTGAATGC+AGG | 0.572676 | 1:-74922364 | MsaT004865.1:CDS |
ATCAATTACGGATTAGATGA+GGG | 0.583144 | 1:+74918798 | None:intergenic |
CATCAATTACGGATTAGATG+AGG | 0.583480 | 1:+74918797 | None:intergenic |
TATGGGAAGATGATGATGAC+AGG | 0.584972 | 1:-74920338 | MsaT004865.1:intron |
TTCCTTGGAGCAAAATCTCG+TGG | 0.586918 | 1:-74920839 | MsaT004865.1:CDS |
TTATTTAAAACTGAAGGCCG+AGG | 0.589346 | 1:-74921564 | MsaT004865.1:CDS |
TTTAAAACAGTGGACTCCGA+TGG | 0.593496 | 1:+74919819 | None:intergenic |
GATGAACTCACGTCAAATGT+TGG | 0.593891 | 1:-74919888 | MsaT004865.1:CDS |
GGCTTCCTGCCTAAAACTCA+AGG | 0.598288 | 1:-74918943 | MsaT004865.1:CDS |
TGCCATTGAAGAACACGAGA+AGG | 0.599044 | 1:-74919012 | MsaT004865.1:CDS |
ACTGAAAGCTGAAGAACCAT+CGG | 0.600098 | 1:-74919835 | MsaT004865.1:CDS |
GTGCAGGCATAAGAAGCAGA+AGG | 0.601872 | 1:-74922393 | MsaT004865.1:intron |
TGGACAGAGTGAACAATCCA+TGG | 0.605363 | 1:-74919865 | MsaT004865.1:CDS |
TTAAAACTGAAGGCCGAGGG+TGG | 0.605393 | 1:-74921560 | MsaT004865.1:CDS |
TGTACTCCTCAAAGGGCACC+CGG | 0.607570 | 1:-74918879 | MsaT004865.1:CDS |
AAATAGAAAGCGAGGACATG+AGG | 0.607787 | 1:-74919737 | MsaT004865.1:CDS |
GAAAAGAAAAGATGACGCTA+CGG | 0.608952 | 1:-74919069 | MsaT004865.1:CDS |
CTCTACCAAAAGATCAAAGG+GGG | 0.611270 | 1:-74919628 | MsaT004865.1:CDS |
GAAAACTGAAATAGAAAGCG+AGG | 0.615849 | 1:-74919745 | MsaT004865.1:CDS |
TCCTTTATATGACTCTGCGG+AGG | 0.618388 | 1:-74919910 | MsaT004865.1:CDS |
TATTTAAAACTGAAGGCCGA+GGG | 0.619845 | 1:-74921563 | MsaT004865.1:CDS |
TCCCATACTTATGAAACTCA+AGG | 0.623281 | 1:-74921344 | MsaT004865.1:intron |
GCAAAGGTTCGCTGCCTCTG+TGG | 0.623435 | 1:-74920881 | MsaT004865.1:CDS |
ATTTAGACACCCATCTCCAC+AGG | 0.625505 | 1:+74922316 | None:intergenic |
CAGTTTGTCATTGAATACTG+TGG | 0.640591 | 1:-74921401 | MsaT004865.1:CDS |
CAAGAAAATGGAATGTCATG+GGG | 0.642373 | 1:-74920991 | MsaT004865.1:CDS |
GAACTCACGTCAAATGTTGG+TGG | 0.647867 | 1:-74919885 | MsaT004865.1:CDS |
CAGGCATAAGAAGCAGAAGG+AGG | 0.647886 | 1:-74922390 | MsaT004865.1:CDS |
TGGTTGAATATTTAAAACAG+TGG | 0.648383 | 1:+74919809 | None:intergenic |
ATTCGAAGTAACACTGCAGG+AGG | 0.651046 | 1:-74919660 | MsaT004865.1:CDS |
GATGATCCCGACAGTGCCTG+TGG | 0.661300 | 1:-74922332 | MsaT004865.1:CDS |
AACATTTGAGCGCACCACAG+AGG | 0.676482 | 1:+74920867 | None:intergenic |
GCCACAAGGGCAAAATCCAG+GGG | 0.678890 | 1:+74922271 | None:intergenic |
AAGAAAATGGAATGTCATGG+GGG | 0.698806 | 1:-74920990 | MsaT004865.1:CDS |
AATTCCTTTATATGACTCTG+CGG | 0.704826 | 1:-74919913 | MsaT004865.1:CDS |
TCTACCAAAAGATCAAAGGG+GGG | 0.707770 | 1:-74919627 | MsaT004865.1:CDS |
TCTCTACCAAAAGATCAAAG+GGG | 0.724844 | 1:-74919629 | MsaT004865.1:CDS |
TTCCTGCCTAAAACTCAAGG+CGG | 0.738527 | 1:-74918940 | MsaT004865.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 74918803 | 74924446 | 74918803 | ID=MsaG004865 |
Chr1 | mRNA | 74918803 | 74924446 | 74918803 | ID=MsaT004865.1;Parent=MsaG004865 |
Chr1 | exon | 74918803 | 74919090 | 74918803 | ID=MsaT004865.1.exon9;Parent=MsaT004865.1 |
Chr1 | CDS | 74918803 | 74919090 | 74918803 | ID=cds.MsaT004865.1;Parent=MsaT004865.1 |
Chr1 | exon | 74919530 | 74919950 | 74919530 | ID=MsaT004865.1.exon8;Parent=MsaT004865.1 |
Chr1 | CDS | 74919530 | 74919950 | 74919530 | ID=cds.MsaT004865.1;Parent=MsaT004865.1 |
Chr1 | exon | 74920339 | 74920373 | 74920339 | ID=MsaT004865.1.exon7;Parent=MsaT004865.1 |
Chr1 | CDS | 74920339 | 74920373 | 74920339 | ID=cds.MsaT004865.1;Parent=MsaT004865.1 |
Chr1 | exon | 74920832 | 74921030 | 74920832 | ID=MsaT004865.1.exon6;Parent=MsaT004865.1 |
Chr1 | CDS | 74920832 | 74921030 | 74920832 | ID=cds.MsaT004865.1;Parent=MsaT004865.1 |
Chr1 | exon | 74921169 | 74921262 | 74921169 | ID=MsaT004865.1.exon5;Parent=MsaT004865.1 |
Chr1 | CDS | 74921169 | 74921262 | 74921169 | ID=cds.MsaT004865.1;Parent=MsaT004865.1 |
Chr1 | exon | 74921345 | 74921429 | 74921345 | ID=MsaT004865.1.exon4;Parent=MsaT004865.1 |
Chr1 | CDS | 74921345 | 74921429 | 74921345 | ID=cds.MsaT004865.1;Parent=MsaT004865.1 |
Chr1 | exon | 74921533 | 74921619 | 74921533 | ID=MsaT004865.1.exon3;Parent=MsaT004865.1 |
Chr1 | CDS | 74921533 | 74921619 | 74921533 | ID=cds.MsaT004865.1;Parent=MsaT004865.1 |
Chr1 | exon | 74922253 | 74922409 | 74922253 | ID=MsaT004865.1.exon2;Parent=MsaT004865.1 |
Chr1 | CDS | 74922253 | 74922409 | 74922253 | ID=cds.MsaT004865.1;Parent=MsaT004865.1 |
Chr1 | exon | 74924439 | 74924446 | 74924439 | ID=MsaT004865.1.exon1;Parent=MsaT004865.1 |
Chr1 | CDS | 74924439 | 74924446 | 74924439 | ID=cds.MsaT004865.1;Parent=MsaT004865.1 |
Gene Sequence |
Protein sequence |