AlfalfaGEDB | MsaG004870

M. sativa ssp. caerulea / MsaG004870

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004870	KEH15972.1	86.747	83	11	0	3	85	73	155	1.04e-38	140

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004870	sp\|Q8H1F0\|BZP29_ARATH	73.846	65	17	0	32	96	372	436	4.46e-23	95.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004870	tr\|A0A072TF27\|A0A072TF27_MEDTR	86.747	83	11	0	3	85	73	155	4.96e-39	140

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TFs/TRs:

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Gene ID	Type	Classification
MsaG004870	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG004870	0.844519	1.345600e-58	6.068730e-56
MsaG000069	MsaG004870	0.801852	1.242128e-48	1.751295e-46
MsaG000219	MsaG004870	0.918374	4.272360e-86	7.155617e-82
MsaG000286	MsaG004870	0.814533	2.536377e-51	4.845574e-49
MsaG000413	MsaG004870	0.846949	2.968163e-59	1.450968e-56
MsaG000472	MsaG004870	0.833234	1.086855e-55	3.454833e-53
MsaG000545	MsaG004870	0.878640	5.006085e-69	8.485086e-66
MsaG000549	MsaG004870	0.838558	4.927481e-57	1.838797e-54
MsaG000553	MsaG004870	0.810729	1.707702e-50	2.968524e-48
MsaG000566	MsaG004870	0.862108	1.266119e-63	1.066999e-60

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004870	MtrunA17_Chr4g0036071	77.941	68	15	0	29	96	335	402	2.08e-25	99.0
MsaG004870	MtrunA17_Chr2g0306581	81.633	49	9	0	42	90	1	49	2.39e-20	79.7
MsaG004870	MtrunA17_Chr6g0463571	55.556	81	35	1	16	96	114	193	8.02e-20	82.0
MsaG004870	MtrunA17_Chr2g0329551	61.765	68	26	0	29	96	196	263	2.34e-19	81.6
MsaG004870	MtrunA17_Chr1g0156051	70.690	58	17	0	29	86	362	419	4.05e-18	78.6
MsaG004870	MtrunA17_Chr5g0432701	68.966	58	18	0	39	96	144	201	1.06e-16	73.9
MsaG004870	MtrunA17_Chr3g0107491	66.667	60	20	0	37	96	160	219	1.33e-16	73.9
MsaG004870	MtrunA17_Chr3g0128781	45.652	92	43	2	6	96	65	150	2.53e-16	72.8
MsaG004870	MtrunA17_Chr5g0407011	91.176	34	3	0	4	37	82	115	1.07e-14	65.5
MsaG004870	MtrunA17_Chr2g0306571	88.571	35	4	0	3	37	143	177	4.55e-14	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004870	AT4G38900.2	73.846	65	17	0	32	96	372	436	4.53e-24	95.9
MsaG004870	AT4G38900.3	73.846	65	17	0	32	96	372	436	4.53e-24	95.9
MsaG004870	AT2G21230.2	64.557	79	26	1	20	96	334	412	9.55e-23	91.7
MsaG004870	AT2G21230.3	64.557	79	26	1	20	96	334	412	6.23e-22	89.7
MsaG004870	AT2G21230.4	64.557	79	26	1	20	96	334	412	6.88e-22	89.7
MsaG004870	AT2G21230.1	64.557	79	26	1	20	96	334	412	6.88e-22	89.7
MsaG004870	AT4G38900.1	67.606	71	17	1	32	96	372	442	8.53e-22	89.4
MsaG004870	AT2G31370.2	60.294	68	27	0	29	96	176	243	3.71e-18	78.6
MsaG004870	AT2G31370.4	60.294	68	27	0	29	96	176	243	3.71e-18	78.6
MsaG004870	AT2G31370.1	60.294	68	27	0	29	96	176	243	3.71e-18	78.6

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Find 23 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAATGTGTGCTTACAATAT+GGG	0.459061	1:+74962076	MsaT004870.1:CDS
ATATCGCATCTTAAGCTCAA+TGG	0.469206	1:-74962480	None:intergenic
ATTGCTGAAGCAAACTCAGC+AGG	0.554785	1:-74962583	None:intergenic
CGAAACATAACAGATGGGAC+AGG	0.602460	1:+74961485	None:intergenic
CTCCCTTCATTGCTAAGGTT+GGG	0.434475	1:+74962029	MsaT004870.1:CDS
CTGATCCGAAGCGGGCTAAA+AGG	0.343423	1:+74962339	MsaT004870.1:CDS
CTTCCCAACCTTAGCAATGA+AGG	0.444601	1:-74962032	None:intergenic
GAAAGTTGCTGAGATTGTTA+TGG	0.484882	1:+74962316	MsaT004870.1:CDS
GACAATGTGTGCTTACAATA+TGG	0.258517	1:+74962075	MsaT004870.1:CDS
GAGGTGTCATATTCTGAAAT+TGG	0.368658	1:-74962559	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	74961498	74962619	74961498	ID=MsaG004870
Chr1	mRNA	74961498	74962619	74961498	ID=MsaT004870.1;Parent=MsaG004870
Chr1	exon	74961498	74961506	74961498	ID=MsaT004870.1.exon1;Parent=MsaT004870.1
Chr1	CDS	74961498	74961506	74961498	ID=cds.MsaT004870.1;Parent=MsaT004870.1
Chr1	exon	74962022	74962102	74962022	ID=MsaT004870.1.exon2;Parent=MsaT004870.1
Chr1	CDS	74962022	74962102	74962022	ID=cds.MsaT004870.1;Parent=MsaT004870.1
Chr1	exon	74962272	74962360	74962272	ID=MsaT004870.1.exon3;Parent=MsaT004870.1
Chr1	CDS	74962272	74962360	74962272	ID=cds.MsaT004870.1;Parent=MsaT004870.1
Chr1	exon	74962448	74962619	74962448	ID=MsaT004870.1.exon4;Parent=MsaT004870.1
Chr1	CDS	74962448	74962619	74962448	ID=cds.MsaT004870.1;Parent=MsaT004870.1

Gene Sequence	>MsaT004870.1 ATGGGACAGGATAAGGCTCCCTTCATTGCTAAGGTTGGGAAGTTGAAGGAGGAGTATGAGAAGACAATGTGTGCTTACAATATGGGAATTACTGAGAAGAATGCTTCAGAGTTGAAGAAAATTATGGCTAATGAGAAAGTTGCTGAGATTGTTATGGCTGATCCGAAGCGGGCTAAAAGGATTTTGGCTAACAGGCAATCGGCTGCGCGTTCCATTGAGCTTAAGATGCGATATATTTTGGAGCTAGAACACAAGGTTCAGACTCTGAATACTGAAGGGTTGTTTCTTCTCCAATTTCAGAATATGACACCTCTCCTGCTGAGTTTGCTTCAGCAATTCTTTGAGTTATGA
Protein sequence	>MsaT004870.1 MGQDKAPFIAKVGKLKEEYEKTMCAYNMGITEKNASELKKIMANEKVAEIVMADPKRAKRILANRQSAARSIELKMRYILELEHKVQTLNTEGLFLLQFQNMTPLLLSLLQQFFEL*