AlfalfaGEDB | MsaG004876

M. sativa ssp. caerulea / MsaG004876

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004876	AES62325.1	74.419	301	28	5	1	284	1	269	1.45e-146	424

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004876	tr\|G7IBX1\|G7IBX1_MEDTR	74.419	301	28	5	1	284	1	269	6.91e-147	424

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TFs/TRs:

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Gene ID	Type	Classification
MsaG004876	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004876	MtrunA17_Chr1g0163221	25.763	295	165	11	12	284	11	273	1.70e-17	81.6
MsaG004876	MtrunA17_Chr3g0131891	26.224	286	178	11	12	283	19	285	9.56e-17	79.3
MsaG004876	MtrunA17_Chr1g0208771	27.636	275	166	10	30	286	16	275	5.51e-16	77.8
MsaG004876	MtrunA17_Chr7g0233561	25.532	282	188	11	15	283	22	294	1.27e-12	67.0
MsaG004876	MtrunA17_Chr1g0163071	25.564	266	165	8	41	284	16	270	1.36e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 42 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGGAGGATAGCATG+GGG	0.772194	1:-75005759	None:intergenic
AAACCACATGGCTATTGGAT+TGG	0.454515	1:+75005569	MsaT004876.1:CDS
AAATATGCTGATGGGATATG+AGG	0.485987	1:-75005695	None:intergenic
AAATTTGAGTACAATTACTT+TGG	0.437036	1:-75007910	None:intergenic
AACAGGAGAGTGCTATGTTT+TGG	0.285292	1:+75007460	MsaT004876.1:CDS
ACACATTCAAAGAAATGTGC+TGG	0.535216	1:+75007210	MsaT004876.1:CDS
ACATTTCTTTGAATGTGTGA+TGG	0.547251	1:-75007205	None:intergenic
ACGGACAATAAATTGAAACT+AGG	0.597678	1:+75007576	MsaT004876.1:CDS
ACGGGCATTGTCATTTGAGA+TGG	0.514098	1:-75005910	None:intergenic
AGAAGGCTGCGATAGCGTTT+AGG	0.433134	1:-75005865	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	75005421	75007918	75005421	ID=MsaG004876
Chr1	mRNA	75005421	75007918	75005421	ID=MsaT004876.1;Parent=MsaG004876
Chr1	exon	75005421	75005973	75005421	ID=MsaT004876.1.exon1;Parent=MsaT004876.1
Chr1	CDS	75005421	75005973	75005421	ID=cds.MsaT004876.1;Parent=MsaT004876.1
Chr1	exon	75007122	75007231	75007122	ID=MsaT004876.1.exon2;Parent=MsaT004876.1
Chr1	CDS	75007122	75007231	75007122	ID=cds.MsaT004876.1;Parent=MsaT004876.1
Chr1	exon	75007426	75007597	75007426	ID=MsaT004876.1.exon3;Parent=MsaT004876.1
Chr1	CDS	75007426	75007597	75007426	ID=cds.MsaT004876.1;Parent=MsaT004876.1
Chr1	exon	75007881	75007918	75007881	ID=MsaT004876.1.exon4;Parent=MsaT004876.1
Chr1	CDS	75007881	75007918	75007881	ID=cds.MsaT004876.1;Parent=MsaT004876.1

Gene Sequence

>MsaT004876.1

ATGATATTTCAAGTTTCTGAAAGCGATACCAAGTTTTGCAAAATTATTGATGAAGACTGCCTTCGAAACGACGATTTGATGATTACAGCTTTGAGTAGTAAATTTTGGGATAATATTTCTAGCCCTATATGTCTTCAGCTTCCTGATAAAACCACATGGCTATTGGATTGGAAACAACATGATGATACTCATGTGTTATTAAACAAGTGGAAGGCATTTGCTGAAGCTTATTCTTTGAAGCATAATCAAGTTTTGCACTTCAACTACGTTGAAGCCTCATATCCCATCAGCATATTTAACCTATCCATTTTTGATGAAACTGGCACGGAAATATGTTACCCCATGCTATCCTCCTTGTTTTCCCCATGGGAAACCAAAACAACAAAACCTGCAGTTTCTTATTATCATCTCAATAGAATGAAGAAAACCAACCAACAAGAGGAGCCTAAACGCTATCGCAGCCTTCTTGCTGAGATATCTGGACAAACTCCATCTCAAATGACAATGCCCGTTGAGTATGCAGATTTTTATACCGCAAAACCTAAAAAAAGAGAAGCTATTGAATGTAGCACTGGAGCATTGGAGAGAGCCAAGGCTTGCCGCAGTCACAACAAATCTTTCATTCGTCAAATGCGCCCATCACACATTCAAAGAAATGTGCTGGTCATACCGCGCAACTTCTTAACAACACGTCAACAACAGGAGAGTGCTATGTTTTGGGTTGTTGAGGCGAAGAGATTTTGGCATGTCAAGTTAAAGCTTAACTCTTGCAATGGACAAATATCTTTTAATGATGGTTGGAAGAATTTTGTCACGGACAATAAATTGAAACTAGGCAGAGATCATTGCTTGTGTGATCCTCGTCCAAAGTAA

Protein sequence

>MsaT004876.1

MIFQVSESDTKFCKIIDEDCLRNDDLMITALSSKFWDNISSPICLQLPDKTTWLLDWKQHDDTHVLLNKWKAFAEAYSLKHNQVLHFNYVEASYPISIFNLSIFDETGTEICYPMLSSLFSPWETKTTKPAVSYYHLNRMKKTNQQEEPKRYRSLLAEISGQTPSQMTMPVEYADFYTAKPKKREAIECSTGALERAKACRSHNKSFIRQMRPSHIQRNVLVIPRNFLTTRQQQESAMFWVVEAKRFWHVKLKLNSCNGQISFNDGWKNFVTDNKLKLGRDHCLCDPRPK*