AlfalfaGEDB | MsaG004891

M. sativa ssp. caerulea / MsaG004891

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004891	XP_003592112.1	96.479	568	17	1	1	568	1	565	0.0	1139

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004891	sp\|Q39117\|TGT2_ARATH	49.797	492	181	10	50	496	36	506	7.99e-141	422

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004891	tr\|G7ICY9\|G7ICY9_MEDTR	96.479	568	17	1	1	568	1	565	0.0	1139

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TFs/TRs:

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Gene ID	Type	Classification
MsaG004891	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004891	MtrunA17_Chr1g0201911	96.479	568	17	1	1	568	1	565	0.0	1139
MsaG004891	MtrunA17_Chr1g0201941	46.090	601	203	16	3	500	2	584	1.11e-152	452
MsaG004891	MtrunA17_Chr6g0463941	54.167	288	111	3	52	318	52	339	9.03e-74	247
MsaG004891	MtrunA17_Chr6g0463941	58.642	162	61	2	363	521	449	607	2.23e-46	172
MsaG004891	MtrunA17_Chr6g0463941	43.617	94	52	1	51	143	460	553	8.17e-19	90.1
MsaG004891	MtrunA17_Chr6g0463941	41.379	87	50	1	375	461	55	140	5.34e-17	84.7
MsaG004891	MtrunA17_Chr1g0198171	29.647	425	224	12	36	432	95	472	5.59e-46	169
MsaG004891	MtrunA17_Chr1g0198171	38.129	139	81	3	329	466	71	205	3.93e-20	94.0
MsaG004891	MtrunA17_Chr2g0290511	37.860	243	123	4	241	463	116	350	1.49e-43	159
MsaG004891	MtrunA17_Chr2g0290511	39.091	110	59	2	54	162	261	363	4.43e-16	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG004891	AT1G76890.2	49.797	492	181	10	50	496	36	506	8.12e-142	422
MsaG004891	AT1G76880.1	51.975	481	195	8	50	497	56	533	1.94e-136	410
MsaG004891	AT5G03680.1	34.038	426	235	12	55	462	119	516	2.85e-60	210
MsaG004891	AT5G28300.1	38.224	259	126	6	240	464	300	558	2.62e-40	155
MsaG004891	AT3G10000.1	33.861	316	181	8	12	323	56	347	2.73e-39	150
MsaG004891	AT3G10000.1	35.915	142	81	3	343	477	53	191	5.14e-21	96.7
MsaG004891	AT1G33240.3	68.132	91	29	0	375	465	435	525	1.10e-37	147
MsaG004891	AT1G33240.2	68.132	91	29	0	375	465	396	486	1.36e-37	147
MsaG004891	AT1G33240.2	43.678	87	48	1	55	140	396	482	1.88e-16	83.2
MsaG004891	AT1G33240.1	68.132	91	29	0	375	465	435	525	2.35e-37	147

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Find 117 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATAAACTTTCATCAA+TGG	0.444317	1:+75243245	MsaT004891.1:CDS
AACATGGATGAATATGAAGA+TGG	0.566553	1:+75243168	MsaT004891.1:CDS
AACCAAAGTATCAAGAAAAT+GGG	0.447699	1:+75242749	MsaT004891.1:CDS
AACCGGCACAATATTCTCAC+CGG	0.619642	1:-75240779	None:intergenic
AACGAATGTGGTAGGGTTTG+TGG	0.409596	1:-75242122	None:intergenic
AACTTCTTCTTCCACAGCTT+CGG	0.361209	1:+75242228	MsaT004891.1:CDS
AAGATAAGATCAGATATGGA+TGG	0.598844	1:+75240934	MsaT004891.1:CDS
AAGATGAATATCAATATTAA+CGG	0.478883	1:+75240865	MsaT004891.1:CDS
AAGGAGAAACGAATGTGGTA+GGG	0.571339	1:-75242129	None:intergenic
AAGTCTTAAGGGTCCACTTT+GGG	0.401378	1:+75240972	MsaT004891.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	75240739	75243281	75240739	ID=MsaG004891
Chr1	mRNA	75240739	75243281	75240739	ID=MsaT004891.1;Parent=MsaG004891
Chr1	exon	75240739	75241007	75240739	ID=MsaT004891.1.exon1;Parent=MsaT004891.1
Chr1	CDS	75240739	75241007	75240739	ID=cds.MsaT004891.1;Parent=MsaT004891.1
Chr1	exon	75241844	75243281	75241844	ID=MsaT004891.1.exon2;Parent=MsaT004891.1
Chr1	CDS	75241844	75243281	75241844	ID=cds.MsaT004891.1;Parent=MsaT004891.1

Gene Sequence

>MsaT004891.1

ATGCAGCTTGGTGATGCAACAGTAATGATGGAGACTTGCTCCGGTGAGAATATTGTGCCGGTTACGGCGCAAAACGGAGGCGGCGGTGAAGAGAAAGGAAGAGAGATTGGTGGTGAGGAAGATGATAAGATGAATATCAATATTAACGGTGGTGGAGGAAATAGGTGGCCCCGCCAAGAAACATTGGCTCTCTTGAAGATAAGATCAGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAGGTTTCAAGGAAACTAGCTGAACTTGGCTATCATAGAAGCTCAAAGAAGTGCAAGGAGAAATTTGAAAATGTATACAAGTATCACAAAAGAACCAAAGAAGGTAGGAGTGGAAAATCAGAAGGAAAAACCTATAGATTTTTTGATCAATTACAAGCACTTGAAAAACAACTCACATTCTCCTCTTACCATCCAAAACCACAACCAAATAATAACACACTCTCATCACCAACAACAAATCCCAATGAAACCACACAAACAATATCATATGTCACAAACACTGTTCCATCCACAAACCCTACCACATTCGTTTCTCCTTCACCACAACCTAACAACAACAATGTTCCAAATTCTTTGCCAAACATGAACAACCTATTCTCAACCACAACAACTTCAACTTCTTCTTCCACAGCTTCGGACGAAGACTTGGAAGAGAAGTATAGAAAGAAGAGAAAATGGAAGGACTATTTCAGGAGACTCACAAGACAAGTGCTTGCAAAACAAGAGGAAATGCAAAAGAAGTTTCTTGAGGCTATAGACAAACGTGAAAAAGAACACATTGCTCAACAAGATGCTTTGAGAATTCAAGAAATGGATAGAATCAATAAAGAACACGAACTTCTTATCCAAGAAAGATCATCAGCAGCTCAAAAAAATGCAGCTGTTATTGCATTTCTCCAAAAATTGTCTGGACAGCCACCACCACAACCACCGCCAGCACCAGAGCTGTCTCCGTGTCAGACAGCTCTGGCATCACAAGTTCAAACACAGCAACTAGTGATACCAAACAACAACATTGTTGAATTTCAAAATTTGAATAATGGTTACAAAAGTGGTAATGGTGGTGCTTCTCCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCTCTAATAAGGATAAGAACAAGTCTTGAACCAAAGTATCAAGAAAATGGGCCAAAAGCGCCATTGTGGGAAGATATTTCAGCTGCAATGAAGAGACAAGGATACAATAGGAATGCGAAAAGGTGCAAAGAAAAATGGGAGAATATCAACAAATACTACAAGAAAATGAAGGAAAGTAACAAGCAAAGGCGTGATGATAGTAAGACATGTCCTTATTTTAATGAACTTGAAGCTATTTACAAAGAAAAGAACAAAACACAGAACCTTTTTGGTTCTAATTCGTTTCATAGCATGAAGTCAAATGAGACGATGGAGCCATTGATGGTGCAGCCAGAACAACAATGGAGACCTCCAACTACATTTGAAGAGGGTGCTGTGGTGAAGAAGAATGTTGATGAAGCAAAAGAAGAAGATGACAATGGTGATGTTGATGATGAAGAAGATGAAAACATGGATGAATATGAAGATGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGTAGCCGTTATGAAGTTGTGACAACAAATAAACTTTCATCAATGGACACAGTTGTATGA

Protein sequence

>MsaT004891.1

MQLGDATVMMETCSGENIVPVTAQNGGGGEEKGREIGGEEDDKMNININGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKQLTFSSYHPKPQPNNNTLSSPTTNPNETTQTISYVTNTVPSTNPTTFVSPSPQPNNNNVPNSLPNMNNLFSTTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREKEHIAQQDALRIQEMDRINKEHELLIQERSSAAQKNAAVIAFLQKLSGQPPPQPPPAPELSPCQTALASQVQTQQLVIPNNNIVEFQNLNNGYKSGNGGASPSPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAAMKRQGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFNELEAIYKEKNKTQNLFGSNSFHSMKSNETMEPLMVQPEQQWRPPTTFEEGAVVKKNVDEAKEEDDNGDVDDEEDENMDEYEDGDSMEEDEGGVSSRYEVVTTNKLSSMDTVV*