Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG004892 | XP_003592114.1 | 91.958 | 659 | 26 | 8 | 1 | 654 | 1 | 637 | 0.0 | 1056 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG004892 | sp|Q39117|TGT2_ARATH | 44.464 | 569 | 207 | 15 | 57 | 604 | 38 | 518 | 3.05e-139 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG004892 | tr|G7ICZ1|G7ICZ1_MEDTR | 91.958 | 659 | 26 | 8 | 1 | 654 | 1 | 637 | 0.0 | 1056 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG004892 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG001156 | MsaG004892 | 0.800371 | 2.486730e-48 | 3.390501e-46 |
| MsaG003276 | MsaG004892 | 0.826560 | 4.518789e-54 | 1.186885e-51 |
| MsaG003288 | MsaG004892 | 0.839785 | 2.375977e-57 | 9.213127e-55 |
| MsaG004726 | MsaG004892 | 0.953644 | 5.797242e-111 | 1.766899e-105 |
| MsaG004892 | MsaG005149 | 0.800554 | 2.282444e-48 | 3.124951e-46 |
| MsaG004892 | MsaG005150 | 0.808042 | 6.399027e-50 | 1.042429e-47 |
| MsaG004892 | MsaG008274 | 0.810670 | 1.758092e-50 | 3.051743e-48 |
| MsaG004892 | MsaG008538 | 0.849275 | 6.814181e-60 | 3.603034e-57 |
| MsaG004892 | MsaG008793 | 0.821361 | 7.392902e-53 | 1.685554e-50 |
| MsaG004892 | MsaG011598 | 0.803598 | 5.438890e-49 | 7.981886e-47 |
| MsaG004892 | MsaG015173 | 0.832832 | 1.366995e-55 | 4.293858e-53 |
| MsaG004892 | MsaG016920 | 0.831120 | 3.602110e-55 | 1.076467e-52 |
| MsaG004892 | MsaG018452 | 0.802230 | 1.039346e-48 | 1.478055e-46 |
| MsaG004892 | MsaG023856 | 0.811736 | 1.035139e-50 | 1.844339e-48 |
| MsaG004892 | MsaG024026 | 0.824637 | 1.284106e-53 | 3.198218e-51 |
| MsaG004892 | MsaG031436 | 0.808526 | 5.052914e-50 | 8.327607e-48 |
| MsaG004892 | MsaG033354 | 0.809873 | 2.607108e-50 | 4.438508e-48 |
| MsaG004892 | MsaG040775 | 0.802693 | 8.354048e-49 | 1.200693e-46 |
| MsaG004892 | MsaG040820 | 0.806452 | 1.385027e-49 | 2.172613e-47 |
| MsaG004892 | MsaG040823 | 0.811902 | 9.528929e-51 | 1.704771e-48 |
| MsaG004892 | MsaG041561 | 0.805486 | 2.205872e-49 | 3.382139e-47 |
| MsaG004892 | MsaG044131 | 0.815416 | 1.618777e-51 | 3.162384e-49 |
| MsaG004892 | MsaG044323 | 0.822816 | 3.412367e-53 | 8.089401e-51 |
| MsaG004892 | MsaG046307 | 0.801277 | 1.627503e-48 | 2.264795e-46 |
| MsaG004892 | MsaG030523 | 0.814352 | 2.779996e-51 | 5.287080e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG004892 | MtrunA17_Chr1g0201941 | 91.958 | 659 | 26 | 8 | 1 | 654 | 1 | 637 | 0.0 | 1056 |
| MsaG004892 | MtrunA17_Chr6g0463941 | 54.459 | 628 | 194 | 16 | 1 | 587 | 1 | 577 | 2.89e-161 | 478 |
| MsaG004892 | MtrunA17_Chr1g0201911 | 44.554 | 606 | 224 | 10 | 2 | 601 | 3 | 502 | 3.71e-143 | 428 |
| MsaG004892 | MtrunA17_Chr2g0290511 | 36.170 | 329 | 172 | 6 | 248 | 575 | 76 | 367 | 2.79e-52 | 184 |
| MsaG004892 | MtrunA17_Chr2g0290511 | 43.820 | 89 | 47 | 2 | 59 | 145 | 261 | 348 | 1.81e-16 | 81.6 |
| MsaG004892 | MtrunA17_Chr1g0190851 | 35.077 | 325 | 173 | 8 | 274 | 579 | 224 | 529 | 1.03e-43 | 165 |
| MsaG004892 | MtrunA17_Chr1g0190851 | 41.000 | 100 | 56 | 2 | 49 | 145 | 407 | 506 | 1.57e-16 | 83.2 |
| MsaG004892 | MtrunA17_Chr1g0198171 | 33.546 | 313 | 156 | 10 | 59 | 365 | 113 | 379 | 1.17e-39 | 152 |
| MsaG004892 | MtrunA17_Chr1g0198171 | 40.541 | 111 | 62 | 3 | 452 | 559 | 94 | 203 | 5.25e-19 | 90.9 |
| MsaG004892 | MtrunA17_Chr7g0273941 | 34.050 | 279 | 136 | 6 | 291 | 560 | 241 | 480 | 3.36e-39 | 150 |
| MsaG004892 | MtrunA17_Chr7g0273941 | 44.792 | 96 | 43 | 2 | 60 | 145 | 381 | 476 | 3.31e-17 | 85.1 |
| MsaG004892 | MtrunA17_Chr7g0265831 | 61.165 | 103 | 38 | 2 | 60 | 161 | 115 | 216 | 1.18e-32 | 131 |
| MsaG004892 | MtrunA17_Chr7g0265831 | 43.617 | 94 | 51 | 2 | 467 | 559 | 112 | 204 | 5.53e-17 | 84.3 |
| MsaG004892 | MtrunA17_Chr7g0265831 | 43.750 | 80 | 45 | 0 | 287 | 366 | 285 | 364 | 9.06e-14 | 74.3 |
| MsaG004892 | MtrunA17_Chr1g0179191 | 66.667 | 87 | 28 | 1 | 60 | 145 | 131 | 217 | 1.40e-31 | 129 |
| MsaG004892 | MtrunA17_Chr1g0179191 | 40.602 | 133 | 65 | 5 | 462 | 592 | 122 | 242 | 7.79e-20 | 93.2 |
| MsaG004892 | MtrunA17_Chr1g0179191 | 37.607 | 117 | 65 | 2 | 259 | 367 | 254 | 370 | 1.09e-14 | 77.4 |
| MsaG004892 | MtrunA17_Chr5g0409071 | 33.696 | 92 | 56 | 3 | 471 | 561 | 46 | 133 | 9.72e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG004892 | AT1G76890.2 | 44.464 | 569 | 207 | 15 | 57 | 604 | 38 | 518 | 3.10e-140 | 421 |
| MsaG004892 | AT1G76880.1 | 53.211 | 327 | 102 | 6 | 50 | 369 | 51 | 333 | 4.55e-89 | 290 |
| MsaG004892 | AT5G03680.1 | 30.952 | 504 | 221 | 13 | 60 | 551 | 119 | 507 | 7.03e-57 | 203 |
| MsaG004892 | AT5G03680.1 | 44.944 | 89 | 47 | 2 | 470 | 557 | 119 | 206 | 8.11e-18 | 87.8 |
| MsaG004892 | AT5G28300.1 | 37.143 | 280 | 140 | 8 | 291 | 557 | 300 | 556 | 1.33e-46 | 174 |
| MsaG004892 | AT5G28300.1 | 40.385 | 104 | 51 | 2 | 53 | 145 | 452 | 555 | 5.71e-16 | 82.0 |
| MsaG004892 | AT1G33240.3 | 66.972 | 109 | 31 | 2 | 59 | 165 | 61 | 166 | 7.52e-40 | 155 |
| MsaG004892 | AT1G33240.1 | 66.972 | 109 | 31 | 2 | 59 | 165 | 61 | 166 | 1.69e-39 | 155 |
| MsaG004892 | AT3G10000.1 | 54.701 | 117 | 47 | 3 | 35 | 145 | 59 | 175 | 5.46e-31 | 127 |
| MsaG004892 | AT3G10000.1 | 43.434 | 99 | 55 | 1 | 462 | 559 | 80 | 178 | 7.85e-21 | 96.7 |
| MsaG004892 | AT3G10000.2 | 51.724 | 116 | 42 | 3 | 35 | 145 | 59 | 165 | 1.84e-27 | 116 |
| MsaG004892 | AT3G10000.2 | 40.816 | 98 | 49 | 1 | 462 | 559 | 80 | 168 | 3.28e-18 | 88.6 |
| MsaG004892 | AT5G47660.1 | 52.632 | 95 | 43 | 1 | 470 | 564 | 303 | 395 | 4.59e-23 | 102 |
| MsaG004892 | AT5G47660.1 | 41.000 | 100 | 53 | 3 | 60 | 158 | 303 | 397 | 3.43e-14 | 75.5 |
| MsaG004892 | AT1G33240.2 | 62.162 | 74 | 23 | 2 | 94 | 165 | 57 | 127 | 7.79e-19 | 91.3 |
| MsaG004892 | AT1G33240.2 | 42.529 | 87 | 49 | 1 | 60 | 145 | 396 | 482 | 4.77e-17 | 85.5 |
| MsaG004892 | AT3G25990.1 | 34.409 | 93 | 60 | 1 | 471 | 562 | 55 | 147 | 1.17e-11 | 67.4 |
Find 179 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGTTGCTTCTGTTAT+TGG | 0.191531 | 1:+75259186 | None:intergenic |
| TTTCGAGATGCAAGTGTTAA+AGG | 0.236888 | 1:-75260439 | MsaT004892.1:CDS |
| GTAGGATTCATATTGATAAT+TGG | 0.247032 | 1:+75259072 | None:intergenic |
| GTTGGGCCCAACTTGGTTGC+CGG | 0.251390 | 1:+75258454 | None:intergenic |
| TTTAAGCATACGATCGGATA+TGG | 0.256367 | 1:-75260470 | MsaT004892.1:CDS |
| GGTGCAGCTGCTGCTGCTGC+TGG | 0.268164 | 1:+75260631 | None:intergenic |
| ACAACAATTGGTGACGAATA+TGG | 0.270177 | 1:-75258410 | MsaT004892.1:CDS |
| TCCTCCCATAGAGGACCTTT+TGG | 0.292057 | 1:+75258256 | None:intergenic |
| TCAGTTGGATGCTTTGTATA+AGG | 0.314622 | 1:-75258086 | MsaT004892.1:CDS |
| GGATTTGCAGAGGAGATTCT+TGG | 0.318376 | 1:-75258821 | MsaT004892.1:CDS |
| AGCAAAACCACCACAAATTT+CGG | 0.324820 | 1:-75259253 | MsaT004892.1:CDS |
| GCATCCAACTGATGAAAATA+AGG | 0.337506 | 1:+75258097 | None:intergenic |
| GAAGTAGGGTTTGTTGTTGA+TGG | 0.341682 | 1:+75259018 | None:intergenic |
| AGAAGATGATGAAGAAGATA+TGG | 0.346341 | 1:-75257870 | MsaT004892.1:CDS |
| ATGGACCAAAAGGTCCTCTA+TGG | 0.346770 | 1:-75258261 | MsaT004892.1:CDS |
| GGCACTGAAATTGAAATTGA+TGG | 0.352504 | 1:+75259120 | None:intergenic |
| TTAACTTGTACCACTGATAT+TGG | 0.352534 | 1:+75258502 | None:intergenic |
| GCAATGGCGGCCACCTCAGC+AGG | 0.356286 | 1:-75257966 | MsaT004892.1:CDS |
| GGACATGTCTTTGAATCTTC+GGG | 0.356338 | 1:+75258118 | None:intergenic |
| AGGACATGTCTTTGAATCTT+CGG | 0.357417 | 1:+75258117 | None:intergenic |
| TCCTTCTTCCGTTGTGTCTT+CGG | 0.361358 | 1:+75258915 | None:intergenic |
| GAAGGATTGGATGGGATTGT+AGG | 0.364446 | 1:+75259054 | None:intergenic |
| CCACCTTCCGCCGTCATGTT+AGG | 0.366216 | 1:+75260607 | None:intergenic |
| TTGGGCCCAACTTGGTTGCC+GGG | 0.367395 | 1:+75258455 | None:intergenic |
| CAACGGTGCCGCCATGCTCT+CGG | 0.368345 | 1:+75258006 | None:intergenic |
| ATTGTTGTTGCTGGTGTTGC+GGG | 0.369324 | 1:+75258425 | None:intergenic |
| GATGAAAGTGGTGGTGGTGG+TGG | 0.369384 | 1:-75257848 | MsaT004892.1:CDS |
| ACCGCCAGCACAACCACCCC+CGG | 0.371351 | 1:-75258473 | MsaT004892.1:CDS |
| CTCGAAAGAGGAAGCGGAAA+TGG | 0.374520 | 1:-75258891 | MsaT004892.1:CDS |
| GCGGAAGGTGGTGGTGGTGG+TGG | 0.380166 | 1:-75260595 | MsaT004892.1:CDS |
| TCGTCACCAATTGTTGTTGC+TGG | 0.391070 | 1:+75258416 | None:intergenic |
| GAGCATGGCGGCACCGTTGA+TGG | 0.394589 | 1:-75258002 | MsaT004892.1:CDS |
| AATAGATCTGTAGAAATGTT+AGG | 0.398303 | 1:+75258973 | None:intergenic |
| TGCTCTCGGGCTGCACCACC+TGG | 0.410175 | 1:+75258020 | None:intergenic |
| TGGTGGTGGTGGTAACTTTG+AGG | 0.417578 | 1:-75257834 | MsaT004892.1:CDS |
| TGAAGAACCTCGGTTACAAT+AGG | 0.426544 | 1:-75258219 | MsaT004892.1:CDS |
| GTAGGAGCTAGCCATGGAAT+TGG | 0.427286 | 1:+75258948 | None:intergenic |
| ACGGCGGAAGGTGGTGGTGG+TGG | 0.432204 | 1:-75260598 | MsaT004892.1:CDS |
| AGTGCTTGAACTTCAACTTT+CGG | 0.432707 | 1:+75258325 | None:intergenic |
| ATCAGGAAGCTAGCAGAACT+TGG | 0.434480 | 1:-75259459 | MsaT004892.1:intron |
| TGGACAGGAAGAAGAAGATA+TGG | 0.441742 | 1:-75257918 | MsaT004892.1:CDS |
| TAACAATGGTGAGACTTTCA+TGG | 0.445045 | 1:-75258371 | MsaT004892.1:CDS |
| GATTCATATTGATAATTGGT+TGG | 0.446345 | 1:+75259076 | None:intergenic |
| AACGTAGCTTCGGTGGTAAC+CGG | 0.450832 | 1:-75260519 | MsaT004892.1:CDS |
| TAGGGTTTGTTGTTGATGGT+TGG | 0.451052 | 1:+75259022 | None:intergenic |
| GTTACAATAGGAATGCAAAA+AGG | 0.452050 | 1:-75258207 | MsaT004892.1:CDS |
| GATGCTTTGTATAAGGAGAA+AGG | 0.452352 | 1:-75258079 | MsaT004892.1:CDS |
| GGAAGAGGATTGGTGGAAGT+AGG | 0.453484 | 1:+75259003 | None:intergenic |
| ATTCATATTGATAATTGGTT+GGG | 0.453777 | 1:+75259077 | None:intergenic |
| TCAGAGAGTGATGTTGAAAG+AGG | 0.453881 | 1:-75260559 | MsaT004892.1:CDS |
| GAAGAGGATTGGTGGAAGTA+GGG | 0.453955 | 1:+75259004 | None:intergenic |
| AACGGTGCCGCCATGCTCTC+GGG | 0.453957 | 1:+75258007 | None:intergenic |
| GCAACACCAGCAACAACAAT+TGG | 0.455453 | 1:-75258422 | MsaT004892.1:CDS |
| TGGTGTTGCGGGACTATTGT+TGG | 0.455975 | 1:+75258436 | None:intergenic |
| ATTGCGGAACAACAAAATCT+AGG | 0.456470 | 1:-75258643 | MsaT004892.1:CDS |
| AAGTTTCTTGTCGCGGCCAC+CGG | 0.458447 | 1:+75260500 | None:intergenic |
| GTAGAAATGTTAGGAAAAGA+TGG | 0.472744 | 1:+75258982 | None:intergenic |
| GTTGGTGCTACACTTCTTTG+TGG | 0.473011 | 1:+75258544 | None:intergenic |
| GGTGGCCGCCATTGCTGCTC+CGG | 0.473929 | 1:+75257974 | None:intergenic |
| AAAATAGTTGAAGGATTGGA+TGG | 0.481737 | 1:+75259045 | None:intergenic |
| CTTTGTGGGATGAAGTTTCA+AGG | 0.482165 | 1:-75260414 | MsaT004892.1:intron |
| GGTGTTGCGGGACTATTGTT+GGG | 0.486909 | 1:+75258437 | None:intergenic |
| ATGACGGCGGAAGGTGGTGG+TGG | 0.488218 | 1:-75260601 | MsaT004892.1:CDS |
| GACTATTGTTGGGCCCAACT+TGG | 0.490563 | 1:+75258447 | None:intergenic |
| TGCATTTCTTTGAACTTCTG+TGG | 0.490979 | 1:+75259433 | None:intergenic |
| TTGGAAAATAGTTGAAGGAT+TGG | 0.493708 | 1:+75259041 | None:intergenic |
| GGTGGTGCAGCCCGAGAGCA+TGG | 0.499156 | 1:-75258017 | MsaT004892.1:CDS |
| TGCAAAGAATCAATAGAGAG+AGG | 0.504131 | 1:-75258735 | MsaT004892.1:CDS |
| TATCTTCTTCTTCCTGTCCA+CGG | 0.504848 | 1:+75257921 | None:intergenic |
| AAAAGATGGAAGAGGATTGG+TGG | 0.511709 | 1:+75258996 | None:intergenic |
| GGTTGATGTTGATGAGTTGA+AGG | 0.511906 | 1:+75259285 | None:intergenic |
| ATGGATGAAAGTGGTGGTGG+TGG | 0.513204 | 1:-75257851 | MsaT004892.1:CDS |
| CAAGCTGATGCACCCACTGC+AGG | 0.513358 | 1:+75257797 | None:intergenic |
| TACCAAGAGAATGGACCAAA+AGG | 0.516965 | 1:-75258271 | MsaT004892.1:CDS |
| GACAACAAGTACCAAGAGAA+TGG | 0.517884 | 1:-75258280 | MsaT004892.1:CDS |
| TGTGTTTGTTGTGGTGGCGG+TGG | 0.518161 | 1:+75258589 | None:intergenic |
| AGGAAAAGATGGAAGAGGAT+TGG | 0.521315 | 1:+75258993 | None:intergenic |
| AATTGTTGTTGCTGGTGTTG+CGG | 0.524953 | 1:+75258424 | None:intergenic |
| TGGGCCCAACTTGGTTGCCG+GGG | 0.525453 | 1:+75258456 | None:intergenic |
| TTGTATAAGGAGAAAGGAAA+GGG | 0.527542 | 1:-75258073 | MsaT004892.1:CDS |
| TGGTGGTAACTTTGAGGTAG+TGG | 0.527717 | 1:-75257828 | MsaT004892.1:CDS |
| TCCGAAGACACAACGGAAGA+AGG | 0.527908 | 1:-75258916 | MsaT004892.1:CDS |
| TGGTTCAGCCGGAGCAGCAA+TGG | 0.533323 | 1:-75257982 | MsaT004892.1:CDS |
| GAAAATTCTAGTGGTGGAGC+TGG | 0.535467 | 1:-75258049 | MsaT004892.1:CDS |
| ATGTTAGGAAAAGATGGAAG+AGG | 0.536730 | 1:+75258988 | None:intergenic |
| GGGCCCAACTTGGTTGCCGG+GGG | 0.537475 | 1:+75258457 | None:intergenic |
| ATTGGTGCTACCGCCGGTGT+TGG | 0.539807 | 1:+75258520 | None:intergenic |
| TGCTCCGGCTGAACCATCAA+CGG | 0.540154 | 1:+75257989 | None:intergenic |
| TGTTGTGTTTGTTGTGGTGG+CGG | 0.542486 | 1:+75258586 | None:intergenic |
| GAAGATGGTGAACGTAGCTT+CGG | 0.543473 | 1:-75260529 | MsaT004892.1:CDS |
| GGTTGGTATGAAAATGATCA+AGG | 0.547374 | 1:+75259307 | None:intergenic |
| GCTACCGCCGGTGTTGGTGT+TGG | 0.551728 | 1:+75258526 | None:intergenic |
| GTGGCCGCGACAAGAAACTT+TGG | 0.552103 | 1:-75260497 | MsaT004892.1:CDS |
| AAGGATCTCGAAAGAGGAAG+CGG | 0.554153 | 1:-75258897 | MsaT004892.1:CDS |
| TGGTGGAGCTGGTTCGAACC+AGG | 0.556702 | 1:-75258038 | MsaT004892.1:CDS |
| TGTTGTTGTGTTTGTTGTGG+TGG | 0.557187 | 1:+75258583 | None:intergenic |
| TGTTGTTGTTGTGTTTGTTG+TGG | 0.560673 | 1:+75258580 | None:intergenic |
| CAAGTGTTAAAGGTCCTTTG+TGG | 0.560707 | 1:-75260429 | MsaT004892.1:CDS |
| GGCACCGTTGATGGTTCAGC+CGG | 0.560808 | 1:-75257993 | MsaT004892.1:CDS |
| CCACCTAACATGACGGCGGA+AGG | 0.561648 | 1:-75260610 | MsaT004892.1:CDS |
| TTCAGCCGGAGCAGCAATGG+CGG | 0.565524 | 1:-75257979 | MsaT004892.1:CDS |
| CGGAAGAAGGATCTCGAAAG+AGG | 0.566261 | 1:-75258903 | MsaT004892.1:CDS |
| TTTGTATAAGGAGAAAGGAA+AGG | 0.568622 | 1:-75258074 | MsaT004892.1:CDS |
| GATGGTTGGAAAATAGTTGA+AGG | 0.571791 | 1:+75259036 | None:intergenic |
| GGTGCTACACTTCTTTGTGG+TGG | 0.573648 | 1:+75258547 | None:intergenic |
| GATGGTGAACGTAGCTTCGG+TGG | 0.573832 | 1:-75260526 | MsaT004892.1:CDS |
| GAAAGTGACAGAGAAGCAAG+AGG | 0.574790 | 1:-75258842 | MsaT004892.1:CDS |
| CATGGAGCAGAACCGTGGAC+AGG | 0.575210 | 1:-75257933 | MsaT004892.1:CDS |
| AAAGATATCTCCTCCCATAG+AGG | 0.576930 | 1:+75258247 | None:intergenic |
| TTTGCAGAGGAGATTCTTGG+AGG | 0.578270 | 1:-75258818 | MsaT004892.1:CDS |
| AAAATAAGAGAAACTATGCT+AGG | 0.578777 | 1:-75260691 | None:intergenic |
| TTGCATTCCTATTGTAACCG+AGG | 0.579636 | 1:+75258212 | None:intergenic |
| GAAAGAGGAAGAGTTGAAGA+TGG | 0.580801 | 1:-75260544 | MsaT004892.1:CDS |
| AGCGCCAAAGTTTCTTGTCG+CGG | 0.581032 | 1:+75260493 | None:intergenic |
| ATGTTGATGAGTTGAAGGGT+TGG | 0.585562 | 1:+75259290 | None:intergenic |
| AACAATGGTGAGACTTTCAT+GGG | 0.588661 | 1:-75258370 | MsaT004892.1:CDS |
| GGTCATTGAGAAACGCGAGC+AGG | 0.589179 | 1:-75258797 | MsaT004892.1:CDS |
| AAAGAGGAAGCGGAAATGGA+AGG | 0.590185 | 1:-75258887 | MsaT004892.1:CDS |
| AGATCTATTATCCAATTCCA+TGG | 0.590202 | 1:-75258959 | MsaT004892.1:CDS |
| GAAGAAGATATGGATGAAAG+TGG | 0.590417 | 1:-75257860 | MsaT004892.1:CDS |
| AAGTGTTAAAGGTCCTTTGT+GGG | 0.591969 | 1:-75260428 | MsaT004892.1:CDS |
| ACTGATATTGGTGCTACCGC+CGG | 0.592470 | 1:+75258514 | None:intergenic |
| TATCACAAGAGAACCAAAGA+TGG | 0.592914 | 1:-75259384 | MsaT004892.1:CDS |
| AAATAGTTGAAGGATTGGAT+GGG | 0.593793 | 1:+75259046 | None:intergenic |
| TGGACCAAAAGGTCCTCTAT+GGG | 0.594236 | 1:-75258260 | MsaT004892.1:CDS |
| GCAAAGAATCAATAGAGAGA+GGG | 0.595028 | 1:-75258734 | MsaT004892.1:CDS |
| ATGTTATCTTCTCCCTGCTG+AGG | 0.596975 | 1:+75257953 | None:intergenic |
| ATGGTGAGACTTTCATGGGA+GGG | 0.597885 | 1:-75258366 | MsaT004892.1:CDS |
| CCTTCCGCCGTCATGTTAGG+TGG | 0.598899 | 1:+75260610 | None:intergenic |
| GGTGTTGGTGCCGAAATTTG+TGG | 0.601888 | 1:+75259243 | None:intergenic |
| TGTAGCACCAACACCAACAC+CGG | 0.603439 | 1:-75258533 | MsaT004892.1:CDS |
| AGAAGCAACAATGTCACAAG+TGG | 0.606912 | 1:-75259178 | MsaT004892.1:CDS |
| GGCCGAGGTGGAAAATCAGA+TGG | 0.609437 | 1:-75259363 | MsaT004892.1:CDS |
| AGTGGCAAACAAACCTGCAG+TGG | 0.609531 | 1:-75257810 | MsaT004892.1:CDS |
| AGAACCAAAGATGGCCGAGG+TGG | 0.611661 | 1:-75259375 | MsaT004892.1:CDS |
| AACATGACGGCGGAAGGTGG+TGG | 0.613643 | 1:-75260604 | MsaT004892.1:CDS |
| ATGGATGAAGATGATAAAGA+TGG | 0.614880 | 1:-75257899 | MsaT004892.1:CDS |
| AAGAGAACCAAAGATGGCCG+AGG | 0.615515 | 1:-75259378 | MsaT004892.1:CDS |
| GATAAATCTGAGGACGAGCA+TGG | 0.616417 | 1:-75258302 | MsaT004892.1:CDS |
| AGCTGCACCACCTAACATGA+CGG | 0.617434 | 1:-75260617 | MsaT004892.1:CDS |
| CCTAACATGACGGCGGAAGG+TGG | 0.623080 | 1:-75260607 | MsaT004892.1:CDS |
| TCAGGAAGCTAGCAGAACTT+GGG | 0.624015 | 1:-75259458 | MsaT004892.1:intron |
| CAATGGCGGCCACCTCAGCA+GGG | 0.624870 | 1:-75257965 | MsaT004892.1:CDS |
| GTTGATGTTGATGAGTTGAA+GGG | 0.625077 | 1:+75259286 | None:intergenic |
| GTTGGTATGAAAATGATCAA+GGG | 0.626104 | 1:+75259308 | None:intergenic |
| TTATCTTCTCCCTGCTGAGG+TGG | 0.627005 | 1:+75257956 | None:intergenic |
| GATATGGATGAAAGTGGTGG+TGG | 0.629728 | 1:-75257854 | MsaT004892.1:CDS |
| AAGGGAGAAAATTCTAGTGG+TGG | 0.630570 | 1:-75258055 | MsaT004892.1:CDS |
| GTCTTCGGAAGACGTCGAGT+AGG | 0.632078 | 1:+75258930 | None:intergenic |
| TCTTTAGCAATGAAGAACCT+CGG | 0.632836 | 1:-75258229 | MsaT004892.1:CDS |
| AGAAGCAAGAGGATTTGCAG+AGG | 0.635450 | 1:-75258831 | MsaT004892.1:CDS |
| GTAGCTTCGGTGGTAACCGG+TGG | 0.643526 | 1:-75260516 | MsaT004892.1:CDS |
| TTCAAGCACTGATAAATCTG+AGG | 0.643720 | 1:-75258312 | MsaT004892.1:CDS |
| GACGTCTTCCGAAGACACAA+CGG | 0.647187 | 1:-75258923 | MsaT004892.1:CDS |
| TGAAGATGATAAAGATGGTG+AGG | 0.649200 | 1:-75257894 | MsaT004892.1:CDS |
| GTAACAACTTGTGACGGTGT+TGG | 0.650468 | 1:+75259228 | None:intergenic |
| GTTGGTGCCGAAATTTGTGG+TGG | 0.654114 | 1:+75259246 | None:intergenic |
| TGCATGAGGGATACTTAGAG+TGG | 0.657060 | 1:+75259149 | None:intergenic |
| GGAAAGGGAGAAAATTCTAG+TGG | 0.661145 | 1:-75258058 | MsaT004892.1:CDS |
| GTGGCAAACAAACCTGCAGT+GGG | 0.663059 | 1:-75257809 | MsaT004892.1:CDS |
| CGTCGAGTAGGAGCTAGCCA+TGG | 0.663851 | 1:+75258942 | None:intergenic |
| ACCAAAAGGTCCTCTATGGG+AGG | 0.664112 | 1:-75258257 | MsaT004892.1:CDS |
| TCAGCAGGGAGAAGATAACA+TGG | 0.666074 | 1:-75257951 | MsaT004892.1:CDS |
| TTGATGGAACAGTTGCATGA+GGG | 0.669086 | 1:+75259136 | None:intergenic |
| GAGTTGTTAGAGAAGAAGCG+TGG | 0.669199 | 1:-75258771 | MsaT004892.1:CDS |
| TGGGAGGGATGAGTTCGTCA+AGG | 0.669391 | 1:-75258351 | MsaT004892.1:CDS |
| ATTGATGGAACAGTTGCATG+AGG | 0.676758 | 1:+75259135 | None:intergenic |
| GCAGTTGTAACAACTTGTGA+CGG | 0.679663 | 1:+75259222 | None:intergenic |
| GATAACATGGAGCAGAACCG+TGG | 0.681082 | 1:-75257938 | MsaT004892.1:CDS |
| ATTGTGAAAGTTGATAACAA+TGG | 0.690514 | 1:-75258385 | MsaT004892.1:CDS |
| AATGGTGAGACTTTCATGGG+AGG | 0.694246 | 1:-75258367 | MsaT004892.1:CDS |
| CTTGAAACTTCATCCCACAA+AGG | 0.698850 | 1:+75260415 | None:intergenic |
| GGCGGTAGCACCAATATCAG+TGG | 0.699903 | 1:-75258512 | MsaT004892.1:CDS |
| GAGGGATGAGTTCGTCAAGG+TGG | 0.700639 | 1:-75258348 | MsaT004892.1:CDS |
| TGGAGCTGGTTCGAACCAGG+TGG | 0.701524 | 1:-75258035 | MsaT004892.1:CDS |
| TGCACCACCTAACATGACGG+CGG | 0.703359 | 1:-75260614 | MsaT004892.1:CDS |
| AGCACCAACACCAACACCGG+CGG | 0.703596 | 1:-75258530 | MsaT004892.1:CDS |
| GGTGCAGCCCGAGAGCATGG+CGG | 0.703630 | 1:-75258014 | MsaT004892.1:CDS |
| GAAGATATGGATGAAAGTGG+TGG | 0.720036 | 1:-75257857 | MsaT004892.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 75257796 | 75260698 | 75257796 | ID=MsaG004892 |
| Chr1 | mRNA | 75257796 | 75260698 | 75257796 | ID=MsaT004892.1;Parent=MsaG004892 |
| Chr1 | exon | 75257796 | 75259476 | 75257796 | ID=MsaT004892.1.exon2;Parent=MsaT004892.1 |
| Chr1 | CDS | 75257796 | 75259476 | 75257796 | ID=cds.MsaT004892.1;Parent=MsaT004892.1 |
| Chr1 | exon | 75260415 | 75260698 | 75260415 | ID=MsaT004892.1.exon1;Parent=MsaT004892.1 |
| Chr1 | CDS | 75260415 | 75260698 | 75260415 | ID=cds.MsaT004892.1;Parent=MsaT004892.1 |
| Gene Sequence |
| Protein sequence |