Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004991 | XP_003592255.1 | 91.849 | 687 | 34 | 3 | 1 | 665 | 1 | 687 | 0.0 | 1301 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004991 | tr|G7IES3|G7IES3_MEDTR | 91.849 | 687 | 34 | 3 | 1 | 665 | 1 | 687 | 0.0 | 1301 |
Gene ID | Type | Classification |
---|---|---|
MsaG004991 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004991 | MtrunA17_Chr1g0202961 | 91.849 | 687 | 34 | 3 | 1 | 665 | 1 | 687 | 0.0 | 1301 |
MsaG004991 | MtrunA17_Chr6g0470531 | 48.207 | 697 | 272 | 16 | 1 | 643 | 1 | 662 | 0.0 | 549 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG004991 | AT4G25610.1 | 41.592 | 666 | 277 | 22 | 18 | 660 | 6 | 582 | 3.25e-140 | 422 |
MsaG004991 | AT4G25610.3 | 41.592 | 666 | 277 | 22 | 18 | 660 | 6 | 582 | 3.25e-140 | 422 |
MsaG004991 | AT4G25610.2 | 43.784 | 555 | 232 | 18 | 18 | 558 | 6 | 494 | 5.66e-124 | 380 |
Find 154 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTGGTTCTTTGTGCAATT+TGG | 0.077562 | 1:+76453789 | None:intergenic |
GTCTTCCGGTTTCATAAAAT+TGG | 0.103009 | 1:+76458464 | None:intergenic |
AAAACCACTGTATCAATTTC+TGG | 0.125076 | 1:+76453817 | None:intergenic |
CAATTTCTGGTTTAGGTTTC+CGG | 0.152003 | 1:+76453830 | None:intergenic |
CGAGAATATTGAACAACTTT+TGG | 0.177844 | 1:+76456226 | None:intergenic |
CCTTTCTCAGGCCTCATTCT+AGG | 0.189935 | 1:+76453106 | None:intergenic |
TGTCGGTGCAAAGTAATTTA+AGG | 0.194876 | 1:-76453477 | MsaT004991.1:CDS |
TTTATGCCTTCTATAATTAA+TGG | 0.197549 | 1:+76457952 | None:intergenic |
CTGGTTCCATTTCCATATTT+TGG | 0.207098 | 1:+76453877 | None:intergenic |
GAACAACTTCGTAGAGAATT+TGG | 0.232636 | 1:-76453674 | MsaT004991.1:CDS |
CAGGGCTGGTTTCTCCCTTT+TGG | 0.236355 | 1:-76456391 | MsaT004991.1:intron |
CCTCCTCCACCAGCAGCTTC+TGG | 0.246352 | 1:+76454956 | None:intergenic |
TCTGGTTCTTTGTGCAATTT+GGG | 0.246471 | 1:+76453790 | None:intergenic |
AAGCCTTCTGAATCTGCTTT+TGG | 0.247089 | 1:+76453400 | None:intergenic |
ACAATAGTACGTTGCGTCTT+AGG | 0.249510 | 1:+76453952 | None:intergenic |
GCTTCTCCTGACCAATATTC+TGG | 0.255812 | 1:+76453647 | None:intergenic |
TGAAAGGAGTCAGGTTTAAT+TGG | 0.262890 | 1:+76453625 | None:intergenic |
GAAAATGGCATAGAAGTTAA+AGG | 0.285683 | 1:-76454258 | MsaT004991.1:CDS |
TCAGGAGTCACTCCAAAATA+TGG | 0.289770 | 1:-76453889 | MsaT004991.1:CDS |
CTCAGGCCTCATTCTAGGTT+TGG | 0.291161 | 1:+76453111 | None:intergenic |
TCTACACCTTCATTGGTGTC+TGG | 0.300627 | 1:+76454147 | None:intergenic |
AACCCATGAGTTTCTGAATC+AGG | 0.303082 | 1:+76453172 | None:intergenic |
TTTCTTGCTAGAGCAGAAAT+TGG | 0.306159 | 1:-76456085 | MsaT004991.1:intron |
TTTAGTAGTTGAACCTTTGC+AGG | 0.320130 | 1:+76458013 | None:intergenic |
ACTGTATCAATTTCTGGTTT+AGG | 0.337996 | 1:+76453823 | None:intergenic |
TTACAGACAAGCTGAGGCTT+TGG | 0.343221 | 1:-76454337 | MsaT004991.1:intron |
GATGGAGGCAATATGGGTTA+TGG | 0.344239 | 1:-76453442 | MsaT004991.1:CDS |
ATTAAACCTGACTCCTTTCA+TGG | 0.345827 | 1:-76453622 | MsaT004991.1:CDS |
GTTCACCCATTAATTATAGA+AGG | 0.346118 | 1:-76457958 | MsaT004991.1:CDS |
TTATGCCTTCTATAATTAAT+GGG | 0.346911 | 1:+76457953 | None:intergenic |
GCGAGGGACCAACTTGAAAA+TGG | 0.348958 | 1:-76454273 | MsaT004991.1:CDS |
GATGGAGAGGCTGGAAAGAT+TGG | 0.351412 | 1:-76456141 | MsaT004991.1:CDS |
TTCCTTTCCTTTCCTAGGGC+TGG | 0.354526 | 1:-76458390 | MsaT004991.1:CDS |
TCGTGAGTCTTAACTTCATC+TGG | 0.355533 | 1:+76453772 | None:intergenic |
CTTCTGGCATTTCAATGCTT+CGG | 0.356524 | 1:+76454972 | None:intergenic |
AATTTGGCAAACCAGAATAT+TGG | 0.361607 | 1:-76453658 | MsaT004991.1:CDS |
TGATATAGATGGAGGCAATA+TGG | 0.363484 | 1:-76453449 | MsaT004991.1:CDS |
AAGCAGATTCAGAAGGCTTT+CGG | 0.365566 | 1:-76453396 | MsaT004991.1:CDS |
GGAAGACGGAAATGATTCTT+TGG | 0.374474 | 1:-76458448 | MsaT004991.1:CDS |
TTAAGGTTGTGTGATATAGA+TGG | 0.376966 | 1:-76453460 | MsaT004991.1:CDS |
ATCAGTCAGGAGTTAAGCTT+TGG | 0.382056 | 1:-76453591 | MsaT004991.1:CDS |
ATCGCCAGAGGAACCATCTT+TGG | 0.386656 | 1:-76454208 | MsaT004991.1:CDS |
TTCCTAGGGCTGGTGGTGAC+AGG | 0.386737 | 1:-76458380 | MsaT004991.1:CDS |
AATGCTTTCCAGGAGGTTCC+AGG | 0.387639 | 1:-76456486 | MsaT004991.1:intron |
AAACTTACTTTGTGCAAGAA+AGG | 0.392052 | 1:+76453351 | None:intergenic |
ATCTTCATCTACACCTTCAT+TGG | 0.394133 | 1:+76454140 | None:intergenic |
TTTATCTTGATTCCTTTCTC+AGG | 0.400060 | 1:+76453094 | None:intergenic |
ATTCATTTGGCAGAAATTCC+AGG | 0.405266 | 1:-76458052 | MsaT004991.1:intron |
ATGGAGGCAATATGGGTTAT+GGG | 0.409471 | 1:-76453441 | MsaT004991.1:CDS |
AAAGAATCATTTCCGTCTTC+CGG | 0.410730 | 1:+76458450 | None:intergenic |
GTCACTCCAAAATATGGAAA+TGG | 0.411876 | 1:-76453883 | MsaT004991.1:CDS |
TGAACAAAACTCTCTGTCTT+TGG | 0.421485 | 1:+76457976 | None:intergenic |
GTTATGATTGTGACACTAAT+CGG | 0.424357 | 1:-76454044 | MsaT004991.1:CDS |
TTTAGGGGCATATTGGGATA+AGG | 0.425758 | 1:-76457732 | MsaT004991.1:intron |
GCCGTGATAGTGGTAAAGTT+TGG | 0.430539 | 1:-76453855 | MsaT004991.1:CDS |
CTTAGGATGCCTTAGCCGTC+TGG | 0.433778 | 1:+76453969 | None:intergenic |
TGACAAGATTATTCTCTGAT+TGG | 0.442959 | 1:+76453707 | None:intergenic |
AACCATTCCTTTCCTTTCCT+AGG | 0.443817 | 1:-76458395 | MsaT004991.1:CDS |
TTAGTTTCATGCTGGCTCAC+TGG | 0.444350 | 1:+76453565 | None:intergenic |
TCTTCCGGTTTCATAAAATT+GGG | 0.452669 | 1:+76458465 | None:intergenic |
ATGGAGAGGCTGGAAAGATT+GGG | 0.452673 | 1:-76456140 | MsaT004991.1:CDS |
TTGCCTCCATGAAAGGAGTC+AGG | 0.453534 | 1:+76453616 | None:intergenic |
CCAGAAGCTGCTGGTGGAGG+AGG | 0.458809 | 1:-76454956 | MsaT004991.1:CDS |
GATATAGATGGAGGCAATAT+GGG | 0.459827 | 1:-76453448 | MsaT004991.1:CDS |
GAAGCTGCTGGTGGAGGAGG+AGG | 0.460524 | 1:-76454953 | MsaT004991.1:CDS |
AACTCTCAAAAGTCTAAGTC+AGG | 0.461546 | 1:-76453907 | MsaT004991.1:CDS |
CCACAGTATTATCTCAGGGC+TGG | 0.465461 | 1:-76456405 | MsaT004991.1:CDS |
TGCAGGATATTGTTCAATCC+AGG | 0.466123 | 1:-76456272 | MsaT004991.1:intron |
GTCTCAACACTTTGAAGTGG+TGG | 0.466490 | 1:+76453538 | None:intergenic |
TGTAGGACTCTAAGATAAGT+AGG | 0.466846 | 1:-76457760 | MsaT004991.1:intron |
AAAATGGCATAGAAGTTAAA+GGG | 0.467666 | 1:-76454257 | MsaT004991.1:CDS |
GCCTCTGTTCTCTCCTGCAA+AGG | 0.470371 | 1:-76458026 | MsaT004991.1:CDS |
TATAGGAAAACTAGAAGGCC+TGG | 0.471838 | 1:+76456254 | None:intergenic |
AGCAATATTTCTTACCAAAA+GGG | 0.473884 | 1:+76456377 | None:intergenic |
ACCATTCCTTTCCTTTCCTA+GGG | 0.476231 | 1:-76458394 | MsaT004991.1:CDS |
AAATTTGATCATCATTTCCA+TGG | 0.478816 | 1:+76453500 | None:intergenic |
GTCATTTGAGAATGTGATGT+TGG | 0.480349 | 1:-76457394 | MsaT004991.1:CDS |
GGCAAACCAGAATATTGGTC+AGG | 0.480574 | 1:-76453653 | MsaT004991.1:CDS |
TTCCAATCGGATGCACAGTC+AGG | 0.483165 | 1:-76454066 | MsaT004991.1:CDS |
CTACACCTTCATTGGTGTCT+GGG | 0.483294 | 1:+76454148 | None:intergenic |
GCTTAGGCTTAAAGAACAAA+AGG | 0.490968 | 1:-76454295 | MsaT004991.1:CDS |
CTTTCCTTTCCTAGGGCTGG+TGG | 0.493616 | 1:-76458387 | MsaT004991.1:CDS |
GAGGCAGTAAGTTTCGCAAC+TGG | 0.495063 | 1:+76458495 | None:intergenic |
AACTTTACCACTATCACGGC+TGG | 0.497031 | 1:+76453858 | None:intergenic |
GATGTTGCACAATCCTTGAC+TGG | 0.499002 | 1:+76453145 | None:intergenic |
ACGCAACGTACTATTGTCAA+TGG | 0.500270 | 1:-76453946 | MsaT004991.1:CDS |
GCAGCCAAAGATGGTTCCTC+TGG | 0.504545 | 1:+76454204 | None:intergenic |
AGGAGGAAGCTGCTCAAAGA+AGG | 0.509595 | 1:-76454936 | MsaT004991.1:intron |
CACCTGATTCAGAAACTCAT+GGG | 0.512560 | 1:-76453174 | MsaT004991.1:CDS |
AACCTGACTGTGCATCCGAT+TGG | 0.515863 | 1:+76454064 | None:intergenic |
CCTAGAATGAGGCCTGAGAA+AGG | 0.517114 | 1:-76453106 | MsaT004991.1:CDS |
TCACCTGATTCAGAAACTCA+TGG | 0.517154 | 1:-76453175 | MsaT004991.1:CDS |
AATGGAACCAGCCGTGATAG+TGG | 0.523832 | 1:-76453865 | MsaT004991.1:CDS |
CAATGGTTGCCAGACGGCTA+AGG | 0.524079 | 1:-76453978 | MsaT004991.1:CDS |
ATGGGAACAAATCTCACGTC+GGG | 0.524173 | 1:-76453423 | MsaT004991.1:CDS |
CATGGAGGCAACAATCAGTC+AGG | 0.524598 | 1:-76453604 | MsaT004991.1:CDS |
AGAAACTTGTGCAAGCAACT+AGG | 0.527314 | 1:+76456103 | None:intergenic |
AAGTCACATGCAGCCAAAGA+TGG | 0.527424 | 1:+76454195 | None:intergenic |
AGCAATTTCGTCACATCATG+TGG | 0.528470 | 1:-76453209 | MsaT004991.1:CDS |
GAAGATATAGGAAAACTAGA+AGG | 0.531281 | 1:+76456249 | None:intergenic |
CTGATTGTTGCCTCCATGAA+AGG | 0.543496 | 1:+76453609 | None:intergenic |
TGTGTAGCTCTCTGTAGAAG+AGG | 0.554214 | 1:-76457430 | MsaT004991.1:intron |
TTCATTTGGCAGAAATTCCA+GGG | 0.554733 | 1:-76458051 | MsaT004991.1:intron |
ACAGAAGTTGACGTAGTCCA+TGG | 0.555082 | 1:-76453517 | MsaT004991.1:CDS |
GTTGCGAAACTTACTGCCTC+AGG | 0.558391 | 1:-76458492 | MsaT004991.1:CDS |
ATGCCAGAAGCTGCTGGTGG+AGG | 0.559726 | 1:-76454959 | MsaT004991.1:CDS |
GCTCTCTGTAGAAGAGGCAA+AGG | 0.564425 | 1:-76457424 | MsaT004991.1:CDS |
GTAGGACTCTAAGATAAGTA+GGG | 0.565142 | 1:-76457759 | MsaT004991.1:intron |
CATTGCCCAGACACCAATGA+AGG | 0.565931 | 1:-76454153 | MsaT004991.1:CDS |
GGAGAGAACAGAGGCCACCC+TGG | 0.571933 | 1:+76458034 | None:intergenic |
AATAATTGAATCCACTGTGC+TGG | 0.572644 | 1:+76458357 | None:intergenic |
CATAAAATTGGGAGTACCTG+AGG | 0.573819 | 1:+76458476 | None:intergenic |
GGCATAAACGTGTACACCAT+CGG | 0.580800 | 1:-76457937 | MsaT004991.1:CDS |
GGCCTGTCACCACCAGCCCT+AGG | 0.584313 | 1:+76458378 | None:intergenic |
GGAGCCACAGACATTCCAAT+CGG | 0.584540 | 1:-76454079 | MsaT004991.1:CDS |
ATGCTTTCCAGGAGGTTCCA+GGG | 0.584824 | 1:-76456485 | MsaT004991.1:intron |
TCTGTCTCAACACTTTGAAG+TGG | 0.585570 | 1:+76453535 | None:intergenic |
CTAAATCCAAACCTAGAATG+AGG | 0.586238 | 1:-76453117 | MsaT004991.1:CDS |
AGGTTGTGTGATATAGATGG+AGG | 0.593933 | 1:-76453457 | MsaT004991.1:CDS |
ATTGAAATGCCAGAAGCTGC+TGG | 0.594331 | 1:-76454965 | MsaT004991.1:CDS |
TCATGGGTTCAAACCAGTCA+AGG | 0.600323 | 1:-76453158 | MsaT004991.1:CDS |
TCAACTCTTCGAACACAACA+AGG | 0.602015 | 1:-76456441 | MsaT004991.1:CDS |
ATAGTGGTAAAGTTTGGAGC+CGG | 0.606698 | 1:-76453849 | MsaT004991.1:CDS |
GGCTTAAAGAACAAAAGGCG+AGG | 0.606871 | 1:-76454290 | MsaT004991.1:CDS |
TCCAAACTTTACCACTATCA+CGG | 0.608024 | 1:+76453854 | None:intergenic |
AGTCAAGGATTGTGCAACAT+CGG | 0.610059 | 1:-76453143 | MsaT004991.1:CDS |
ATTTATTTACAGACAAGCTG+AGG | 0.611059 | 1:-76454343 | MsaT004991.1:intron |
GCCCTAGGAAAGGAAAGGAA+TGG | 0.614272 | 1:+76458393 | None:intergenic |
TAAACCAGAAATTGATACAG+TGG | 0.614991 | 1:-76453821 | MsaT004991.1:CDS |
GTCACCACCAGCCCTAGGAA+AGG | 0.616240 | 1:+76458383 | None:intergenic |
GGATACATTGATAAGACAAG+CGG | 0.623294 | 1:-76458427 | MsaT004991.1:CDS |
CACCAGCCCTAGGAAAGGAA+AGG | 0.626418 | 1:+76458388 | None:intergenic |
TCATAATCCTCGACGCACAA+TGG | 0.626814 | 1:-76453995 | MsaT004991.1:CDS |
ATTTGAGAATGTGATGTTGG+AGG | 0.627772 | 1:-76457391 | MsaT004991.1:intron |
CATGCTTTAGAACAGCAACA+AGG | 0.632194 | 1:-76458333 | MsaT004991.1:intron |
AAAGGGTGCATCAGAAACAC+AGG | 0.634148 | 1:-76454240 | MsaT004991.1:CDS |
GACGCACAATGGTTGCCAGA+CGG | 0.637366 | 1:-76453984 | MsaT004991.1:CDS |
GCTTAAAGAACAAAAGGCGA+GGG | 0.639528 | 1:-76454289 | MsaT004991.1:CDS |
ACATTGATAAGACAAGCGGT+TGG | 0.640269 | 1:-76458423 | MsaT004991.1:CDS |
CTGGCAACCATTGTGCGTCG+AGG | 0.640552 | 1:+76453988 | None:intergenic |
CTTTCACATAGGTAAAGGCG+TGG | 0.647669 | 1:-76455011 | MsaT004991.1:intron |
GGGCCAAAAGCAGATTCAGA+AGG | 0.649820 | 1:-76453403 | MsaT004991.1:CDS |
GCTTGTACAATTGAAGACCC+TGG | 0.657586 | 1:+76456468 | None:intergenic |
GTGCATCAGAAACACAGGAG+AGG | 0.672991 | 1:-76454235 | MsaT004991.1:CDS |
GCATCCGATTGGAATGTCTG+TGG | 0.681947 | 1:+76454075 | None:intergenic |
GTGGTGACAGGCCAGCACAG+TGG | 0.685473 | 1:-76458368 | MsaT004991.1:CDS |
TATGGGAACAAATCTCACGT+CGG | 0.688700 | 1:-76453424 | MsaT004991.1:CDS |
GAAATGCCAGAAGCTGCTGG+TGG | 0.694123 | 1:-76454962 | MsaT004991.1:CDS |
AAACCTGACTCCTTTCATGG+AGG | 0.702374 | 1:-76453619 | MsaT004991.1:CDS |
ACCTTTGCAGGAGAGAACAG+AGG | 0.703630 | 1:+76458025 | None:intergenic |
AGGAGAGGAGATATCGCCAG+AGG | 0.716215 | 1:-76454220 | MsaT004991.1:CDS |
ATTTGGCAGAAATTCCAGGG+TGG | 0.736950 | 1:-76458048 | MsaT004991.1:intron |
CCAGCCCTGAGATAATACTG+TGG | 0.746348 | 1:+76456405 | None:intergenic |
TTGTGACACTGATCAGAACG+TGG | 0.764373 | 1:-76454100 | MsaT004991.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 76453063 | 76458520 | 76453063 | ID=MsaG004991 |
Chr1 | mRNA | 76453063 | 76458520 | 76453063 | ID=MsaT004991.1;Parent=MsaG004991 |
Chr1 | exon | 76453063 | 76453241 | 76453063 | ID=MsaT004991.1.exon9;Parent=MsaT004991.1 |
Chr1 | CDS | 76453063 | 76453241 | 76453063 | ID=cds.MsaT004991.1;Parent=MsaT004991.1 |
Chr1 | exon | 76453359 | 76454353 | 76453359 | ID=MsaT004991.1.exon8;Parent=MsaT004991.1 |
Chr1 | CDS | 76453359 | 76454353 | 76453359 | ID=cds.MsaT004991.1;Parent=MsaT004991.1 |
Chr1 | exon | 76454937 | 76455022 | 76454937 | ID=MsaT004991.1.exon7;Parent=MsaT004991.1 |
Chr1 | CDS | 76454937 | 76455022 | 76454937 | ID=cds.MsaT004991.1;Parent=MsaT004991.1 |
Chr1 | exon | 76456086 | 76456289 | 76456086 | ID=MsaT004991.1.exon6;Parent=MsaT004991.1 |
Chr1 | CDS | 76456086 | 76456289 | 76456086 | ID=cds.MsaT004991.1;Parent=MsaT004991.1 |
Chr1 | exon | 76456392 | 76456496 | 76456392 | ID=MsaT004991.1.exon5;Parent=MsaT004991.1 |
Chr1 | CDS | 76456392 | 76456496 | 76456392 | ID=cds.MsaT004991.1;Parent=MsaT004991.1 |
Chr1 | exon | 76457392 | 76457445 | 76457392 | ID=MsaT004991.1.exon4;Parent=MsaT004991.1 |
Chr1 | CDS | 76457392 | 76457445 | 76457392 | ID=cds.MsaT004991.1;Parent=MsaT004991.1 |
Chr1 | exon | 76457733 | 76457777 | 76457733 | ID=MsaT004991.1.exon3;Parent=MsaT004991.1 |
Chr1 | CDS | 76457733 | 76457777 | 76457733 | ID=cds.MsaT004991.1;Parent=MsaT004991.1 |
Chr1 | exon | 76457919 | 76458061 | 76457919 | ID=MsaT004991.1.exon2;Parent=MsaT004991.1 |
Chr1 | CDS | 76457919 | 76458061 | 76457919 | ID=cds.MsaT004991.1;Parent=MsaT004991.1 |
Chr1 | exon | 76458334 | 76458520 | 76458334 | ID=MsaT004991.1.exon1;Parent=MsaT004991.1 |
Chr1 | CDS | 76458334 | 76458520 | 76458334 | ID=cds.MsaT004991.1;Parent=MsaT004991.1 |
Gene Sequence |
Protein sequence |