AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005029


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005029 MtrunA17_Chr1g0203411 85.410 329 14 2 1 329 1 295 0.0 570
MsaG005029 MtrunA17_Chr8g0349261 46.224 331 125 11 1 313 1 296 1.62e-87 265
MsaG005029 MtrunA17_Chr7g0217741 60.000 185 62 3 1 174 1 184 6.08e-73 228
MsaG005029 MtrunA17_Chr6g0453471 63.158 171 55 3 1 163 1 171 6.41e-71 224
MsaG005029 MtrunA17_Chr4g0042671 61.047 172 59 1 1 164 1 172 2.28e-68 219
MsaG005029 MtrunA17_Chr1g0187761 76.471 119 28 0 1 119 1 119 2.96e-66 209
MsaG005029 MtrunA17_Chr1g0167691 77.586 116 26 0 1 116 1 116 3.35e-66 209
MsaG005029 MtrunA17_Chr7g0247131 46.503 286 109 9 44 316 10 264 4.33e-66 209
MsaG005029 MtrunA17_Chr4g0039971 74.576 118 30 0 1 118 2 119 1.49e-64 207
MsaG005029 MtrunA17_Chr1g0167661 62.914 151 45 1 1 140 1 151 1.83e-63 201
MsaG005029 MtrunA17_Chr2g0281071 73.504 117 30 1 1 116 1 117 6.43e-63 203
MsaG005029 MtrunA17_Chr4g0048511 73.504 117 30 1 1 116 1 117 9.68e-63 203
MsaG005029 MtrunA17_Chr3g0115821 70.339 118 35 0 1 118 1 118 4.71e-62 201
MsaG005029 MtrunA17_Chr7g0261281 69.672 122 37 0 1 122 1 122 2.06e-61 197
MsaG005029 MtrunA17_Chr2g0323411 70.588 119 35 0 1 119 1 119 5.09e-61 197
MsaG005029 MtrunA17_Chr7g0274581 66.387 119 40 0 1 119 1 119 2.05e-60 192
MsaG005029 MtrunA17_Chr5g0410961 71.552 116 33 0 1 116 1 116 2.70e-60 196
MsaG005029 MtrunA17_Chr4g0068061 69.828 116 35 0 1 116 1 116 2.09e-59 194
MsaG005029 MtrunA17_Chr4g0060721 50.556 180 78 4 1 175 2 175 5.80e-59 192
MsaG005029 MtrunA17_Chr3g0131121 68.966 116 36 0 1 116 1 116 8.27e-59 191
MsaG005029 MtrunA17_Chr1g0193371 68.908 119 37 0 1 119 1 119 9.88e-59 193
MsaG005029 MtrunA17_Chr7g0217221 68.067 119 38 0 1 119 1 119 1.67e-58 189
MsaG005029 MtrunA17_Chr5g0395281 68.644 118 37 0 1 118 1 118 5.17e-58 189
MsaG005029 MtrunA17_Chr4g0037141 67.241 116 38 0 1 116 1 116 5.49e-58 188
MsaG005029 MtrunA17_Chr7g0254411 68.644 118 37 0 1 118 1 118 2.22e-57 189
MsaG005029 MtrunA17_Chr3g0092401 66.949 118 39 0 1 118 2 119 2.56e-57 187
MsaG005029 MtrunA17_Chr4g0070611 67.521 117 38 0 1 117 1 117 3.40e-57 187
MsaG005029 MtrunA17_Chr8g0385321 67.241 116 38 0 1 116 1 116 7.11e-57 186
MsaG005029 MtrunA17_Chr4g0070641 67.521 117 38 0 1 117 1 117 8.52e-57 181
MsaG005029 MtrunA17_Chr7g0275911 65.812 117 40 0 1 117 1 117 8.56e-57 184
MsaG005029 MtrunA17_Chr1g0193801 66.949 118 39 0 1 118 1 118 1.69e-56 187
MsaG005029 MtrunA17_Chr7g0270891 66.102 118 40 0 1 118 1 118 3.26e-56 186
MsaG005029 MtrunA17_Chr8g0346561 57.241 145 49 1 1 145 1 132 4.76e-56 184
MsaG005029 MtrunA17_Chr6g0453211 69.369 111 34 0 1 111 1 111 1.24e-55 183
MsaG005029 MtrunA17_Chr7g0228891 56.081 148 56 1 1 139 1 148 5.81e-55 180
MsaG005029 MtrunA17_Chr3g0121241 68.750 112 35 0 5 116 35 146 1.29e-54 180
MsaG005029 MtrunA17_Chr7g0271241 41.991 231 129 2 1 231 1 226 2.30e-54 182
MsaG005029 MtrunA17_Chr3g0103281 65.517 116 40 0 1 116 1 116 4.02e-54 180
MsaG005029 MtrunA17_Chr8g0387421 64.407 118 42 0 1 118 1 118 7.44e-54 179
MsaG005029 MtrunA17_Chr5g0435101 62.281 114 43 0 3 116 2 115 8.52e-54 175
MsaG005029 MtrunA17_Chr1g0194951 65.517 116 40 0 1 116 1 116 1.04e-53 180
MsaG005029 MtrunA17_Chr2g0323351 64.655 116 41 0 1 116 1 116 1.60e-53 176
MsaG005029 MtrunA17_Chr2g0330041 64.655 116 41 0 1 116 1 116 2.14e-53 180
MsaG005029 MtrunA17_Chr2g0311221 68.182 110 35 0 2 111 4 113 3.36e-53 177
MsaG005029 MtrunA17_Chr8g0342541 63.793 116 42 0 1 116 1 116 5.04e-53 177
MsaG005029 MtrunA17_Chr1g0151941 54.110 146 62 2 1 145 1 142 6.22e-53 174
MsaG005029 MtrunA17_Chr8g0342521 63.793 116 42 0 1 116 1 116 1.42e-52 176
MsaG005029 MtrunA17_Chr2g0309911 65.766 111 38 0 6 116 5 115 2.12e-52 175
MsaG005029 MtrunA17_Chr4g0022931 62.500 120 44 1 1 119 1 120 2.31e-52 174
MsaG005029 MtrunA17_Chr3g0110351 61.864 118 45 0 1 118 1 118 2.60e-52 174
MsaG005029 MtrunA17_Chr4g0028311 65.812 117 39 1 1 116 1 117 3.86e-52 174
MsaG005029 MtrunA17_Chr5g0434571 61.864 118 45 0 1 118 37 154 5.70e-52 175
MsaG005029 MtrunA17_Chr4g0058631 63.793 116 42 0 1 116 1 116 7.09e-52 175
MsaG005029 MtrunA17_Chr7g0269831 68.103 116 37 0 1 116 1 116 1.66e-51 174
MsaG005029 MtrunA17_Chr4g0022891 57.895 133 49 2 1 126 1 133 1.71e-51 170
MsaG005029 MtrunA17_Chr2g0327351 61.538 130 49 1 1 129 1 130 1.80e-51 172
MsaG005029 MtrunA17_Chr5g0417821 51.250 160 73 2 11 169 6 161 1.81e-51 172
MsaG005029 MtrunA17_Chr4g0057031 63.793 116 42 0 1 116 1 116 4.12e-51 170
MsaG005029 MtrunA17_Chr5g0397231 67.273 110 36 0 1 110 1 110 4.21e-51 172
MsaG005029 MtrunA17_Chr3g0135311 63.248 117 42 1 1 116 1 117 5.79e-51 172
MsaG005029 MtrunA17_Chr4g0022901 62.393 117 43 1 1 116 1 117 1.18e-50 169
MsaG005029 MtrunA17_Chr3g0117091 62.712 118 44 0 1 118 1 118 1.42e-50 171
MsaG005029 MtrunA17_Chr7g0264641 60.684 117 45 1 1 116 1 117 5.49e-50 167
MsaG005029 MtrunA17_Chr6g0452271 61.207 116 45 0 1 116 1 116 7.85e-50 169
MsaG005029 MtrunA17_Chr4g0022911 59.829 117 46 1 1 116 1 117 8.75e-50 167
MsaG005029 MtrunA17_Chr4g0044421 61.207 116 45 0 1 116 1 116 1.12e-49 164
MsaG005029 MtrunA17_Chr1g0152011 61.538 117 44 1 1 116 1 117 2.86e-49 167
MsaG005029 MtrunA17_Chr4g0022881 60.526 114 45 0 1 114 1 114 3.26e-49 164
MsaG005029 MtrunA17_Chr1g0211161 63.063 111 41 0 6 116 7 117 3.84e-49 164
MsaG005029 MtrunA17_Chr5g0400821 58.400 125 51 1 1 124 1 125 3.84e-49 166
MsaG005029 MtrunA17_Chr1g0203441 64.815 108 38 0 13 120 14 121 8.39e-49 164
MsaG005029 MtrunA17_Chr8g0342481 60.684 117 45 1 1 116 1 117 3.69e-48 166
MsaG005029 MtrunA17_Chr4g0054391 64.545 110 38 1 1 109 1 110 9.45e-48 162
MsaG005029 MtrunA17_Chr4g0072751 63.063 111 40 1 1 110 1 111 1.49e-46 160
MsaG005029 MtrunA17_Chr6g0470971 60.714 112 44 0 4 115 6 117 1.75e-46 159
MsaG005029 MtrunA17_Chr2g0328771 60.377 106 42 0 12 117 20 125 2.15e-46 159
MsaG005029 MtrunA17_Chr4g0032401 60.748 107 42 0 12 118 17 123 7.12e-46 158
MsaG005029 MtrunA17_Chr3g0080861 64.220 109 39 0 12 120 37 145 1.22e-45 162
MsaG005029 MtrunA17_Chr6g0487491 58.065 124 43 2 1 115 1 124 1.57e-45 155
MsaG005029 MtrunA17_Chr3g0099131 61.468 109 42 0 12 120 41 149 2.21e-45 162
MsaG005029 MtrunA17_Chr2g0322521 59.200 125 47 1 11 135 28 148 2.80e-45 159
MsaG005029 MtrunA17_Chr3g0088461 61.468 109 42 0 9 117 19 127 4.33e-45 157
MsaG005029 MtrunA17_Chr4g0055981 62.617 107 40 0 9 115 52 158 1.03e-44 152
MsaG005029 MtrunA17_Chr8g0354661 59.829 117 47 0 12 128 37 153 1.25e-44 160
MsaG005029 MtrunA17_Chr7g0228231 60.185 108 43 0 12 119 14 121 5.58e-44 150
MsaG005029 MtrunA17_Chr8g0343831 59.813 107 43 0 12 118 8 114 1.50e-43 150
MsaG005029 MtrunA17_Chr6g0450101 55.833 120 51 1 1 118 1 120 1.98e-43 148
MsaG005029 MtrunA17_Chr1g0209661 58.559 111 46 0 8 118 23 133 4.21e-43 150
MsaG005029 MtrunA17_Chr7g0220341 62.037 108 39 1 11 116 24 131 3.38e-42 147
MsaG005029 MtrunA17_Chr1g0168661 54.783 115 52 0 6 120 15 129 4.56e-42 146
MsaG005029 MtrunA17_Chr1g0194291 60.185 108 43 0 11 118 20 127 7.95e-42 146
MsaG005029 MtrunA17_Chr1g0186061 59.223 103 42 0 13 115 21 123 7.97e-42 145
MsaG005029 MtrunA17_Chr5g0434831 59.434 106 43 0 11 116 6 111 1.10e-41 143
MsaG005029 MtrunA17_Chr4g0042611 69.318 88 27 0 1 88 1 88 2.54e-41 139
MsaG005029 MtrunA17_Chr5g0434911 56.364 110 48 0 7 116 16 125 3.77e-41 144
MsaG005029 MtrunA17_Chr5g0434931 58.491 106 44 0 11 116 34 139 1.34e-40 143
MsaG005029 MtrunA17_Chr1g0194301 56.075 107 47 0 12 118 33 139 1.58e-40 143
MsaG005029 MtrunA17_Chr1g0154031 54.688 128 51 2 12 133 76 202 2.00e-40 146
MsaG005029 MtrunA17_Chr2g0294811 65.217 92 32 0 1 92 1 92 5.27e-40 136
MsaG005029 MtrunA17_Chr1g0180391 57.273 110 45 1 10 117 15 124 7.78e-40 140
MsaG005029 MtrunA17_Chr7g0240821 59.406 101 41 0 16 116 5 105 2.45e-39 138
MsaG005029 MtrunA17_Chr7g0228991 58.491 106 44 0 11 116 28 133 5.69e-39 139
MsaG005029 MtrunA17_Chr5g0434841 56.604 106 46 0 11 116 19 124 2.92e-38 138
MsaG005029 MtrunA17_Chr8g0360111 57.843 102 43 0 11 112 24 125 3.66e-38 136
MsaG005029 MtrunA17_Chr8g0342511 63.218 87 32 0 1 87 1 87 1.71e-37 129
MsaG005029 MtrunA17_Chr2g0293911 58.879 107 44 0 12 118 24 130 3.28e-37 135
MsaG005029 MtrunA17_Chr4g0068921 57.944 107 45 0 12 118 24 130 1.09e-36 130
MsaG005029 MtrunA17_Chr2g0327821 51.818 110 53 0 12 121 6 115 1.18e-36 132
MsaG005029 MtrunA17_Chr1g0192411 51.376 109 53 0 12 120 12 120 1.62e-36 135
MsaG005029 MtrunA17_Chr8g0342531 61.798 89 34 0 1 89 1 89 1.90e-36 129
MsaG005029 MtrunA17_Chr5g0440781 43.200 125 70 1 12 135 12 136 2.64e-34 124
MsaG005029 MtrunA17_Chr8g0342461 60.000 90 35 1 1 89 1 90 4.91e-34 122
MsaG005029 MtrunA17_Chr8g0342471 60.000 90 35 1 1 89 1 90 9.99e-34 121
MsaG005029 MtrunA17_Chr5g0440761 43.200 125 70 1 12 135 12 136 1.04e-33 125
MsaG005029 MtrunA17_Chr5g0441141 43.200 125 70 1 12 135 12 136 1.17e-33 125
MsaG005029 MtrunA17_Chr5g0441131 50.000 104 51 1 12 114 9 112 1.38e-33 122
MsaG005029 MtrunA17_Chr5g0395221 61.364 88 34 0 1 88 1 88 1.52e-33 119
MsaG005029 MtrunA17_Chr4g0030881 46.667 120 57 1 13 125 8 127 6.95e-33 122
MsaG005029 MtrunA17_Chr2g0323321 54.348 92 41 1 1 92 1 91 1.77e-32 117
MsaG005029 MtrunA17_Chr4g0013361 45.378 119 64 1 8 125 6 124 3.54e-32 121
MsaG005029 MtrunA17_Chr3g0099141 56.627 83 36 0 12 94 40 122 2.32e-31 115
MsaG005029 MtrunA17_Chr8g0334881 48.598 107 54 1 12 117 10 116 4.85e-31 119
MsaG005029 MtrunA17_Chr6g0454921 45.385 130 68 2 14 143 15 141 6.52e-31 115
MsaG005029 MtrunA17_Chr5g0401731 52.941 102 47 1 14 115 15 115 5.60e-30 116
MsaG005029 MtrunA17_Chr4g0008551 51.456 103 47 2 14 115 38 138 1.18e-28 113
MsaG005029 MtrunA17_Chr3g0139671 47.664 107 55 1 14 120 85 190 2.37e-28 115
MsaG005029 MtrunA17_Chr3g0139671 30.189 106 72 2 14 118 33 137 7.36e-11 63.5
MsaG005029 MtrunA17_Chr4g0053431 49.020 102 51 1 14 115 5 105 5.48e-28 109
MsaG005029 MtrunA17_Chr3g0133601 47.573 103 53 1 14 116 37 138 1.02e-26 105
MsaG005029 MtrunA17_Chr1g0157731 43.925 107 59 1 14 120 91 196 1.19e-26 110
MsaG005029 MtrunA17_Chr1g0157731 30.189 106 72 2 14 118 39 143 3.95e-11 64.3
MsaG005029 MtrunA17_Chr7g0229131 60.274 73 29 0 44 116 4 76 2.55e-26 102
MsaG005029 MtrunA17_Chr7g0229101 61.429 70 27 0 44 113 4 73 2.90e-26 103
MsaG005029 MtrunA17_Chr6g0480581 46.667 105 54 2 14 118 4 106 8.19e-26 103
MsaG005029 MtrunA17_Chr7g0238631 47.573 103 53 1 14 116 113 214 2.94e-25 106
MsaG005029 MtrunA17_Chr7g0238631 31.132 106 71 2 14 118 61 165 4.75e-11 63.5
MsaG005029 MtrunA17_Chr5g0417621 36.747 166 84 4 14 178 134 279 3.98e-25 105
MsaG005029 MtrunA17_Chr5g0434901 63.636 66 24 0 48 113 9 74 4.82e-25 97.8
MsaG005029 MtrunA17_Chr4g0042501 33.908 174 97 3 14 186 105 261 7.15e-25 103
MsaG005029 MtrunA17_Chr5g0429661 45.536 112 55 3 14 124 122 228 8.14e-25 102
MsaG005029 MtrunA17_Chr4g0058991 43.966 116 61 3 12 125 207 320 1.92e-24 103
MsaG005029 MtrunA17_Chr5g0425591 45.882 85 45 1 12 95 9 93 3.84e-24 94.4
MsaG005029 MtrunA17_Chr5g0437321 46.465 99 52 1 14 112 19 116 7.62e-24 99.0
MsaG005029 MtrunA17_Chr3g0117511 42.478 113 63 2 14 125 183 294 1.42e-23 100
MsaG005029 MtrunA17_Chr5g0397841 45.000 100 54 1 10 109 106 204 7.40e-23 98.6
MsaG005029 MtrunA17_Chr6g0460661 41.121 107 62 1 14 120 16 121 8.48e-23 93.2
MsaG005029 MtrunA17_Chr7g0254261 40.678 118 66 2 14 128 89 205 1.09e-22 97.1
MsaG005029 MtrunA17_Chr3g0125801 45.283 106 55 2 14 118 16 119 4.48e-22 94.4
MsaG005029 MtrunA17_Chr7g0228531 41.593 113 61 3 12 124 218 325 8.28e-22 95.5
MsaG005029 MtrunA17_Chr3g0093811 54.667 75 34 0 44 118 14 88 9.84e-22 92.8
MsaG005029 MtrunA17_Chr6g0453751 44.681 94 43 2 11 95 19 112 4.46e-21 87.4
MsaG005029 MtrunA17_Chr7g0238651 41.667 108 61 1 14 119 7 114 6.15e-21 92.0
MsaG005029 MtrunA17_Chr6g0460671 39.252 107 64 1 14 120 99 204 1.01e-20 91.3
MsaG005029 MtrunA17_Chr7g0228401 46.512 86 45 1 25 110 290 374 4.93e-19 87.8
MsaG005029 MtrunA17_Chr1g0177901 45.349 86 46 1 25 110 5 89 2.79e-18 82.0
MsaG005029 MtrunA17_Chr7g0228481 38.776 98 58 2 12 109 218 313 2.26e-17 82.4
MsaG005029 MtrunA17_Chr7g0233061 36.522 115 57 4 14 122 180 284 9.08e-17 80.1
MsaG005029 MtrunA17_Chr7g0247141 60.417 48 18 1 1 47 1 48 1.42e-16 73.2
MsaG005029 MtrunA17_Chr5g0416341 37.273 110 65 2 8 117 23 128 2.99e-16 79.3
MsaG005029 MtrunA17_Chr4g0042621 51.190 84 33 1 89 164 15 98 3.83e-16 78.2
MsaG005029 MtrunA17_Chr8g0362231 36.283 113 68 2 8 120 19 127 5.59e-16 78.2
MsaG005029 MtrunA17_Chr1g0193901 42.529 87 48 2 12 96 11 97 1.44e-14 68.9
MsaG005029 MtrunA17_Chr1g0193891 42.529 87 48 2 12 96 11 97 1.44e-14 68.9
MsaG005029 MtrunA17_Chr1g0193871 42.529 87 48 2 12 96 11 97 1.44e-14 68.9
MsaG005029 MtrunA17_Chr1g0193881 42.529 87 48 2 12 96 11 97 1.44e-14 68.9
MsaG005029 MtrunA17_Chr5g0434871 60.465 43 17 0 74 116 2 44 7.12e-14 65.9
MsaG005029 MtrunA17_Chr3g0104491 38.961 77 42 2 53 125 1 76 9.02e-12 64.7
MsaG005029 MtrunA17_Chr5g0434891 58.696 46 19 0 78 123 2 47 1.18e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005029 AT3G61250.1 61.538 221 69 4 1 206 1 220 1.35e-88 268
MsaG005029 AT3G01140.2 63.529 170 56 1 1 164 1 170 9.89e-74 231
MsaG005029 AT5G15310.1 61.988 171 59 1 1 165 1 171 2.17e-71 224
MsaG005029 AT5G15310.4 61.988 171 59 1 1 165 1 171 2.53e-71 222
MsaG005029 AT5G15310.2 61.988 171 59 1 1 165 1 171 2.83e-71 224
MsaG005029 AT3G01140.1 62.573 171 58 1 1 165 44 214 3.98e-71 226
MsaG005029 AT2G31180.1 75.833 120 29 0 1 120 1 120 9.61e-67 210
MsaG005029 AT4G05100.1 74.359 117 29 1 1 116 1 117 1.00e-64 207
MsaG005029 AT3G23250.1 75.000 116 29 0 1 116 1 116 5.25e-64 204
MsaG005029 AT4G21440.1 73.276 116 31 0 1 116 1 116 5.73e-64 206
MsaG005029 AT4G28110.1 71.429 119 34 0 1 119 1 119 1.54e-63 203
MsaG005029 AT5G16770.4 71.186 118 34 0 1 118 1 118 2.10e-63 204
MsaG005029 AT5G16770.3 71.186 118 34 0 1 118 1 118 2.10e-63 204
MsaG005029 AT5G16770.1 71.186 118 34 0 1 118 1 118 4.70e-63 203
MsaG005029 AT5G16770.2 71.186 118 34 0 1 118 1 118 4.70e-63 203
MsaG005029 AT3G02940.2 70.339 118 35 0 1 118 1 118 6.81e-63 202
MsaG005029 AT3G02940.1 70.339 118 35 0 1 118 1 118 1.26e-62 202
MsaG005029 AT3G02940.3 70.339 118 35 0 1 118 1 118 1.26e-62 202
MsaG005029 AT1G06180.1 52.062 194 88 2 1 194 1 189 2.17e-61 196
MsaG005029 AT1G34670.1 70.339 118 35 0 1 118 1 118 2.37e-61 200
MsaG005029 AT5G62470.2 70.339 118 35 0 1 118 1 118 3.23e-60 197
MsaG005029 AT4G09460.1 68.966 116 36 0 1 116 1 116 7.77e-60 192
MsaG005029 AT1G35515.1 49.724 181 86 2 1 180 1 177 8.68e-60 191
MsaG005029 AT2G16720.1 68.966 116 36 0 1 116 1 116 1.67e-59 192
MsaG005029 AT1G79180.1 70.339 118 35 0 2 119 4 121 1.90e-59 193
MsaG005029 AT5G60890.1 68.644 118 37 0 1 118 1 118 2.94e-59 192
MsaG005029 AT5G10280.1 67.797 118 38 0 1 118 1 118 3.91e-59 193
MsaG005029 AT5G62470.1 70.339 118 34 1 1 118 1 117 7.98e-59 193
MsaG005029 AT3G47600.1 68.644 118 37 0 1 118 1 118 1.03e-58 192
MsaG005029 AT4G38620.1 68.966 116 36 0 1 116 1 116 1.59e-58 190
MsaG005029 AT1G22640.1 68.103 116 37 0 1 116 1 116 1.87e-58 189
MsaG005029 AT1G74650.1 70.690 116 34 0 1 116 1 116 2.36e-58 191
MsaG005029 AT1G08810.1 67.227 119 39 0 1 119 1 119 7.15e-58 188
MsaG005029 AT5G65230.1 66.949 118 39 0 1 118 1 118 2.14e-57 188
MsaG005029 AT4G17785.2 65.546 119 40 1 1 118 1 119 2.40e-57 189
MsaG005029 AT3G28910.1 65.323 124 43 0 1 124 1 124 3.03e-57 188
MsaG005029 AT4G17785.1 65.546 119 40 1 1 118 1 119 3.13e-57 189
MsaG005029 AT5G49330.1 68.966 116 36 0 1 116 1 116 3.91e-57 188
MsaG005029 AT1G56160.1 68.696 115 36 0 2 116 4 118 5.42e-57 187
MsaG005029 AT1G16490.1 67.826 115 37 0 2 116 4 118 1.02e-56 185
MsaG005029 AT1G18570.1 69.231 117 35 1 1 116 1 117 1.16e-56 187
MsaG005029 AT3G13890.2 66.379 116 39 0 1 116 1 116 2.77e-56 187
MsaG005029 AT4G34990.1 66.379 116 39 0 1 116 1 116 3.11e-56 184
MsaG005029 AT3G13540.1 66.949 118 38 1 4 120 15 132 6.45e-56 182
MsaG005029 AT3G62610.1 65.574 122 42 0 1 122 1 122 7.20e-56 185
MsaG005029 AT5G54230.1 71.552 116 33 0 1 116 1 116 7.29e-56 184
MsaG005029 AT4G01680.3 66.667 117 39 0 1 117 1 117 1.06e-55 181
MsaG005029 AT2G47460.1 64.754 122 43 0 1 122 1 122 2.77e-55 184
MsaG005029 AT5G26660.1 64.407 118 42 0 1 118 1 118 3.61e-55 184
MsaG005029 AT4G01680.1 66.667 117 39 0 1 117 1 117 7.30e-55 182
MsaG005029 AT3G12820.1 69.298 114 35 0 3 116 5 118 9.34e-55 179
MsaG005029 AT5G61420.2 64.407 118 42 0 1 118 1 118 3.90e-54 181
MsaG005029 AT5G16600.1 64.407 118 42 0 1 118 1 118 4.93e-54 180
MsaG005029 AT1G57560.1 63.793 116 42 0 1 116 1 116 5.64e-54 179
MsaG005029 AT1G57560.2 62.712 118 44 0 1 118 1 118 6.57e-54 178
MsaG005029 AT5G56110.1 54.000 150 64 1 1 145 1 150 1.40e-53 179
MsaG005029 AT1G09540.1 62.712 118 44 0 1 118 1 118 1.69e-53 179
MsaG005029 AT1G63910.1 64.407 118 42 0 1 118 1 118 3.94e-53 179
MsaG005029 AT3G13890.1 61.600 125 39 1 1 116 1 125 4.07e-53 179
MsaG005029 AT5G07690.1 65.789 114 39 0 1 114 1 114 4.70e-53 177
MsaG005029 AT1G74080.1 64.912 114 40 0 1 114 1 114 5.27e-53 177
MsaG005029 AT1G79180.2 54.967 151 35 1 2 119 4 154 6.61e-53 177
MsaG005029 AT3G12720.1 66.667 111 37 0 6 116 16 126 7.37e-53 176
MsaG005029 AT4G12350.1 64.655 116 41 0 1 116 1 116 1.08e-52 175
MsaG005029 AT4G22680.1 63.793 116 42 0 1 116 1 116 2.63e-52 174
MsaG005029 AT1G66230.1 61.017 118 46 0 1 118 1 118 2.93e-52 174
MsaG005029 AT5G07700.1 64.655 116 41 0 1 116 1 116 3.59e-52 175
MsaG005029 AT5G07700.2 64.655 116 41 0 1 116 1 116 3.59e-52 175
MsaG005029 AT1G74430.1 65.517 116 40 0 1 116 1 116 1.58e-51 172
MsaG005029 AT4G01680.2 60.465 129 39 1 1 117 1 129 2.12e-51 174
MsaG005029 AT5G14340.1 61.864 118 45 0 1 118 13 130 7.26e-51 170
MsaG005029 AT5G57620.1 63.248 117 42 1 1 116 1 117 7.64e-51 172
MsaG005029 AT5G23000.1 63.248 117 42 1 1 116 1 117 4.26e-50 170
MsaG005029 AT5G65790.1 59.677 124 49 1 1 123 1 124 1.35e-49 170
MsaG005029 AT4G37780.1 60.684 117 45 1 1 116 1 117 3.47e-49 167
MsaG005029 AT2G36890.1 61.983 121 45 1 1 120 1 121 3.57e-49 166
MsaG005029 AT3G49690.1 59.843 127 46 2 1 122 1 127 3.71e-49 167
MsaG005029 AT2G36890.2 61.983 121 45 1 1 120 42 162 4.36e-49 167
MsaG005029 AT1G18710.1 62.931 116 43 0 1 116 1 116 8.41e-49 164
MsaG005029 AT5G06100.1 61.261 111 43 0 10 120 30 140 2.30e-48 168
MsaG005029 AT5G06100.5 60.177 113 45 0 8 120 28 140 1.09e-47 168
MsaG005029 AT5G06100.2 60.177 113 45 0 8 120 28 140 1.09e-47 168
MsaG005029 AT5G06100.3 60.177 113 45 0 8 120 28 140 1.09e-47 168
MsaG005029 AT5G06100.4 60.177 113 45 0 8 120 28 140 1.09e-47 168
MsaG005029 AT5G62320.1 58.197 122 44 1 2 116 3 124 1.53e-47 160
MsaG005029 AT5G35550.1 62.712 118 39 1 12 124 14 131 1.55e-47 161
MsaG005029 AT2G32460.1 62.832 113 42 0 8 120 14 126 4.90e-47 166
MsaG005029 AT2G32460.2 63.636 110 40 0 11 120 5 114 1.01e-46 164
MsaG005029 AT5G55020.1 61.017 118 46 0 12 129 26 143 1.29e-46 165
MsaG005029 AT5G40330.1 58.716 109 45 0 8 116 8 116 3.62e-46 156
MsaG005029 AT5G14750.1 61.538 104 40 0 13 116 17 120 6.40e-46 155
MsaG005029 AT5G12870.1 60.748 107 42 0 12 118 18 124 4.55e-45 155
MsaG005029 AT3G08500.1 60.550 109 43 0 9 117 27 135 6.37e-45 157
MsaG005029 AT3G28470.1 58.182 110 46 0 1 110 1 110 1.09e-44 155
MsaG005029 AT4G26930.1 57.600 125 48 1 12 136 19 138 1.60e-44 157
MsaG005029 AT3G11440.2 58.716 109 45 0 12 120 41 149 1.75e-44 158
MsaG005029 AT3G48920.1 60.185 108 43 0 9 116 15 122 2.28e-44 153
MsaG005029 AT3G11440.3 55.462 119 53 0 12 130 41 159 8.98e-44 158
MsaG005029 AT3G11440.4 55.462 119 53 0 12 130 41 159 8.98e-44 158
MsaG005029 AT3G11440.1 55.462 119 53 0 12 130 41 159 8.98e-44 158
MsaG005029 AT3G27920.1 56.881 109 47 0 8 116 10 118 1.16e-43 150
MsaG005029 AT3G30210.1 50.000 146 62 2 11 145 26 171 2.11e-43 150
MsaG005029 AT3G27810.1 59.259 108 44 0 12 119 20 127 3.44e-43 149
MsaG005029 AT4G25560.1 59.130 115 45 1 1 115 1 113 3.83e-43 150
MsaG005029 AT5G52600.1 61.538 104 40 0 12 115 12 115 6.19e-43 147
MsaG005029 AT3G24310.1 60.748 107 42 0 11 117 17 123 9.95e-43 149
MsaG005029 AT5G40350.1 59.259 108 44 0 12 119 17 124 1.07e-42 147
MsaG005029 AT3G01530.1 50.725 138 61 2 8 141 21 155 1.07e-42 147
MsaG005029 AT5G52260.1 60.870 115 45 0 1 115 1 115 1.39e-42 148
MsaG005029 AT2G26960.1 56.250 112 49 0 9 120 17 128 1.09e-41 150
MsaG005029 AT4G13480.1 58.879 107 44 0 13 119 7 113 2.17e-41 145
MsaG005029 AT1G48000.1 57.547 106 45 0 12 117 32 137 3.35e-39 139
MsaG005029 AT1G66370.1 53.043 115 50 1 1 115 1 111 3.87e-39 139
MsaG005029 AT3G46130.1 50.847 118 58 0 8 125 5 122 6.66e-39 139
MsaG005029 AT1G68320.1 57.009 107 46 0 12 118 19 125 1.74e-38 138
MsaG005029 AT1G25340.1 55.660 106 47 0 13 118 19 124 1.94e-38 138
MsaG005029 AT5G59780.3 52.212 113 54 0 13 125 9 121 2.07e-38 136
MsaG005029 AT2G47190.1 52.727 110 52 0 8 117 16 125 2.15e-38 137
MsaG005029 AT1G66380.1 58.095 105 44 0 11 115 7 111 8.59e-37 129
MsaG005029 AT3G53200.1 57.692 104 44 0 12 115 9 112 1.20e-36 132
MsaG005029 AT5G49620.1 45.029 171 82 3 8 178 22 180 2.51e-36 133
MsaG005029 AT1G56650.1 58.095 105 44 0 11 115 7 111 3.42e-36 131
MsaG005029 AT1G66390.1 58.095 105 44 0 11 115 7 111 1.30e-35 129
MsaG005029 AT3G06490.1 57.944 107 45 0 12 118 19 125 1.44e-35 131
MsaG005029 AT3G12820.2 75.714 70 17 0 47 116 1 70 2.86e-34 124
MsaG005029 AT1G25340.2 52.830 106 45 1 13 118 19 119 3.37e-34 127
MsaG005029 AT2G26950.1 46.721 122 60 2 9 130 13 129 4.98e-34 129
MsaG005029 AT1G25340.3 52.830 106 45 1 13 118 19 119 5.01e-34 127
MsaG005029 AT5G26660.2 71.622 74 21 0 45 118 14 87 1.43e-33 126
MsaG005029 AT3G47600.2 72.973 74 20 0 45 118 39 112 1.89e-33 126
MsaG005029 AT5G14750.3 65.385 78 24 1 39 116 12 86 8.34e-33 120
MsaG005029 AT5G49620.2 41.899 179 80 3 8 172 22 190 8.79e-33 124
MsaG005029 AT5G35550.2 64.706 85 25 1 45 124 50 134 4.42e-32 120
MsaG005029 AT3G60460.1 45.536 112 60 1 7 117 6 117 7.88e-32 121
MsaG005029 AT3G46130.3 57.955 88 37 0 38 125 3 90 7.89e-31 116
MsaG005029 AT5G59780.2 60.494 81 32 0 45 125 20 100 1.26e-30 115
MsaG005029 AT3G46130.4 60.494 81 32 0 45 125 20 100 2.16e-30 115
MsaG005029 AT3G27810.2 61.039 77 30 0 43 119 2 78 5.20e-30 113
MsaG005029 AT5G40350.2 62.667 75 28 0 45 119 5 79 4.94e-29 110
MsaG005029 AT3G53200.2 66.197 71 24 0 45 115 9 79 1.14e-28 110
MsaG005029 AT5G02320.1 48.544 103 52 1 14 116 127 228 1.37e-27 113
MsaG005029 AT5G02320.1 33.019 106 69 2 14 118 75 179 9.93e-13 69.3
MsaG005029 AT5G02320.2 48.544 103 52 1 14 116 127 228 1.37e-27 113
MsaG005029 AT5G02320.2 33.019 106 69 2 14 118 75 179 9.93e-13 69.3
MsaG005029 AT5G02320.3 48.544 103 52 1 14 116 67 168 1.60e-27 112
MsaG005029 AT5G02320.3 33.019 106 69 2 14 118 15 119 1.37e-12 68.6
MsaG005029 AT4G32730.5 45.631 103 55 1 14 116 87 188 5.30e-27 112
MsaG005029 AT4G32730.5 30.841 107 72 2 14 119 35 140 1.10e-11 66.2
MsaG005029 AT4G32730.4 45.631 103 55 1 14 116 87 188 5.30e-27 112
MsaG005029 AT4G32730.4 30.841 107 72 2 14 119 35 140 1.10e-11 66.2
MsaG005029 AT4G32730.3 45.631 103 55 1 14 116 87 188 5.30e-27 112
MsaG005029 AT4G32730.3 30.841 107 72 2 14 119 35 140 1.10e-11 66.2
MsaG005029 AT4G32730.2 45.631 103 55 1 14 116 87 188 5.30e-27 112
MsaG005029 AT4G32730.2 30.841 107 72 2 14 119 35 140 1.10e-11 66.2
MsaG005029 AT4G32730.1 45.631 103 55 1 14 116 87 188 6.49e-27 111
MsaG005029 AT4G32730.1 30.841 107 72 2 14 119 35 140 1.22e-11 66.2
MsaG005029 AT2G23290.1 50.980 102 49 1 14 115 13 113 7.04e-27 108
MsaG005029 AT3G27785.1 47.458 118 55 3 8 123 183 295 7.13e-27 110
MsaG005029 AT4G37260.1 49.020 102 51 1 14 115 13 113 2.53e-26 106
MsaG005029 AT2G39880.1 48.544 103 50 2 14 115 50 150 3.25e-26 107
MsaG005029 AT3G09230.1 48.113 106 46 2 14 115 55 155 4.54e-26 107
MsaG005029 AT3G23250.2 73.333 60 16 0 58 117 1 60 8.22e-26 103
MsaG005029 AT1G73410.1 47.009 117 56 3 14 129 6 117 8.58e-26 103
MsaG005029 AT4G33450.1 41.525 118 63 2 3 120 13 124 1.28e-25 103
MsaG005029 AT5G17800.1 43.636 110 61 1 14 123 93 201 1.61e-25 104
MsaG005029 AT1G69560.1 45.045 111 58 2 9 118 102 210 2.25e-25 104
MsaG005029 AT1G69560.2 45.045 111 58 2 9 118 118 226 2.36e-25 104
MsaG005029 AT1G73410.2 47.009 117 56 3 14 129 6 117 2.95e-25 101
MsaG005029 AT1G66380.3 63.380 71 26 0 45 115 8 78 3.09e-25 98.2
MsaG005029 AT5G67300.1 48.039 102 52 1 14 115 6 106 3.13e-25 103
MsaG005029 AT5G40360.1 38.235 136 82 2 1 136 145 278 4.32e-25 103
MsaG005029 AT3G09370.1 47.170 106 47 2 14 115 130 230 4.84e-25 105
MsaG005029 AT3G09370.2 47.170 106 47 2 14 115 135 235 5.27e-25 105
MsaG005029 AT3G09370.3 47.170 106 47 2 14 115 143 243 6.83e-25 105
MsaG005029 AT4G18770.1 42.149 121 64 3 8 125 211 328 8.17e-25 104
MsaG005029 AT1G26780.1 41.221 131 69 3 14 143 98 221 8.56e-25 101
MsaG005029 AT5G11510.3 46.667 105 51 2 14 116 81 182 1.48e-24 105
MsaG005029 AT5G11510.3 32.075 106 70 2 14 118 29 133 5.46e-11 64.3
MsaG005029 AT5G11510.1 46.667 105 51 2 14 116 81 182 1.48e-24 105
MsaG005029 AT5G11510.1 32.075 106 70 2 14 118 29 133 5.46e-11 64.3
MsaG005029 AT5G11510.4 46.667 105 51 2 14 116 81 182 1.48e-24 105
MsaG005029 AT5G11510.4 32.075 106 70 2 14 118 29 133 5.46e-11 64.3
MsaG005029 AT1G17950.1 46.226 106 54 2 14 118 5 108 1.64e-24 100
MsaG005029 AT5G11510.2 46.667 105 51 2 14 116 81 182 1.66e-24 104
MsaG005029 AT5G11510.2 32.075 106 70 2 14 118 29 133 4.55e-11 64.3
MsaG005029 AT5G11510.5 45.631 103 55 1 14 116 81 182 1.72e-24 104
MsaG005029 AT5G11510.5 32.075 106 70 2 14 118 29 133 4.54e-11 64.3
MsaG005029 AT1G26780.2 41.221 131 69 3 14 143 98 221 2.88e-24 102
MsaG005029 AT5G58850.1 41.860 129 70 3 14 141 105 229 3.47e-24 102
MsaG005029 AT1G22640.3 66.102 59 20 0 58 116 1 59 4.28e-24 97.8
MsaG005029 AT3G55730.1 47.573 103 51 2 14 115 56 156 5.47e-24 101
MsaG005029 AT3G50060.1 46.078 102 54 1 14 115 6 106 7.08e-24 99.8
MsaG005029 AT5G11050.1 41.732 127 65 4 12 137 103 221 1.21e-23 100
MsaG005029 AT5G14750.4 62.712 59 22 0 58 116 1 59 6.31e-23 93.2
MsaG005029 AT5G14750.2 62.712 59 22 0 58 116 1 59 6.31e-23 93.2
MsaG005029 AT1G66380.2 54.430 79 36 0 11 89 7 85 1.33e-21 88.6
MsaG005029 AT3G29020.1 40.000 105 62 1 14 118 65 168 1.64e-21 91.7
MsaG005029 AT1G18960.1 42.857 105 57 2 14 118 10 111 2.50e-21 92.8
MsaG005029 AT3G29020.2 40.000 105 62 1 14 118 67 170 3.96e-21 92.4
MsaG005029 AT2G25230.1 41.441 111 61 3 8 117 20 127 1.08e-20 89.7
MsaG005029 AT4G00540.2 42.727 110 59 2 12 118 101 209 1.92e-20 91.7
MsaG005029 AT1G71030.2 53.030 66 31 0 51 116 5 70 2.18e-20 87.4
MsaG005029 AT1G71030.1 53.030 66 31 0 51 116 19 84 2.62e-20 87.4
MsaG005029 AT4G00540.1 42.727 110 59 2 12 118 99 207 3.16e-20 91.3
MsaG005029 AT2G37630.1 39.815 108 63 1 13 118 3 110 4.09e-19 87.4
MsaG005029 AT5G15310.3 52.381 84 34 1 88 165 9 92 2.21e-18 83.6
MsaG005029 AT2G02820.3 33.987 153 80 5 8 143 27 175 2.37e-17 82.0
MsaG005029 AT2G02820.1 33.987 153 80 5 8 143 27 175 8.55e-17 81.3
MsaG005029 AT5G40430.1 36.036 111 68 3 7 117 47 154 1.01e-16 79.0
MsaG005029 AT2G02820.2 33.987 153 80 5 8 143 27 175 1.29e-16 80.9
MsaG005029 AT5G39700.1 34.615 104 67 1 15 118 57 159 6.89e-16 75.1
MsaG005029 AT5G59780.1 53.571 56 26 0 70 125 1 56 1.95e-15 73.6
MsaG005029 AT1G14350.2 34.375 128 74 3 8 135 22 139 3.16e-15 76.6
MsaG005029 AT1G14350.1 34.375 128 74 3 8 135 22 139 3.16e-15 76.6
MsaG005029 AT3G46130.2 53.571 56 26 0 70 125 1 56 3.72e-15 73.2
MsaG005029 AT3G28910.2 62.000 50 19 0 78 127 2 51 1.66e-14 72.4
MsaG005029 AT1G74650.3 76.923 39 9 0 78 116 2 40 2.67e-14 72.0
MsaG005029 AT4G25560.2 67.442 43 14 0 73 115 5 47 4.12e-14 70.9
MsaG005029 AT5G61420.1 71.053 38 11 0 81 118 2 39 4.68e-12 65.9
MsaG005029 AT4G28110.2 75.000 32 8 0 88 119 4 35 5.64e-11 61.6

Find 77 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGGACACGTTTCTTTAAA+TGG 0.094066 1:+76851078 None:intergenic
GCTTTGTTGTCGACACTTTC+AGG 0.180202 1:+76850652 None:intergenic
AAGCTTCAGTTTGTAGTTAC+TGG 0.214754 1:+76850596 None:intergenic
ATCACTATCATCATCAAAAT+TGG 0.243319 1:-76850724 MsaT005029.1:CDS
GAGTCCACTTTGCTTAATTC+AGG 0.272638 1:-76850930 MsaT005029.1:CDS
TGAAGATGTTGACGTGATTC+AGG 0.278646 1:-76850628 MsaT005029.1:CDS
GATAGATCTGGTTCAGATTC+AGG 0.282629 1:-76850567 MsaT005029.1:CDS
CTGCGTATGCCTGATGAAAT+AGG 0.293386 1:-76850498 MsaT005029.1:CDS
ATCTCATTGTCTGTTCTTCC+TGG 0.294103 1:+76851119 None:intergenic
CTGATTACTTTCTTCAACTT+TGG 0.298456 1:-76850887 MsaT005029.1:CDS
CAACCCTTGCACTTTCCCAC+TGG 0.302795 1:+76850976 None:intergenic
GCCTGATGAAATAGGATTCC+TGG 0.344813 1:-76850490 MsaT005029.1:CDS
ACTAAAGCTTCATCTTCTTC+AGG 0.351058 1:+76853460 None:intergenic
TTGACAGTACCTGCATGTTT+AGG 0.374019 1:+76853394 None:intergenic
TTCTTGAATCTCCTTGATTA+CGG 0.382536 1:-76850453 MsaT005029.1:CDS
CCGGACACGTTTCTTTAAAT+GGG 0.388694 1:+76851079 None:intergenic
ACAATGAGATTAAGAACTAT+TGG 0.389201 1:-76851106 MsaT005029.1:CDS
TTAGACTGGGCATTCCTATC+AGG 0.389920 1:+76851023 None:intergenic
AACCCTTGCACTTTCCCACT+GGG 0.410798 1:+76850977 None:intergenic
GCGGCAAAAGTTGCCGGCTT+CGG 0.411394 1:-76851409 MsaT005029.1:CDS
TAAGATGCGGCAAAAGTTGC+CGG 0.416041 1:-76851415 MsaT005029.1:CDS
CAACTTTGGCATTCTGATGT+TGG 0.417033 1:-76850873 MsaT005029.1:CDS
TGGGCCATGTGGCGTGTAGA+AGG 0.420239 1:+76850996 None:intergenic
ATGTTCAGACGTCTCATTGC+AGG 0.429353 1:-76850697 MsaT005029.1:CDS
CAAAGTTGAAGAAAGTAATC+AGG 0.443367 1:+76850888 None:intergenic
ATCCATGTCTCCTTCCTGAT+AGG 0.449112 1:-76851037 MsaT005029.1:CDS
TTCATGCCATGCTTGGCAAC+AGG 0.452030 1:-76851313 MsaT005029.1:intron
CCCAGGAATCCTATTTCATC+AGG 0.453232 1:+76850489 None:intergenic
AACGTGTCCGGCAGTCACTA+AGG 0.458737 1:-76851067 MsaT005029.1:CDS
ATTCAACTTCATGCCATGCT+TGG 0.464130 1:-76851320 MsaT005029.1:CDS
GTGTAGAAGGAGAATTAGAC+TGG 0.475010 1:+76851009 None:intergenic
GATAGTTTATCCACCGAAGC+CGG 0.479363 1:+76851396 None:intergenic
ACAAACATGGCCATGGGAGT+TGG 0.494826 1:-76853426 MsaT005029.1:CDS
AGTCACATCTTCCGTAATCA+AGG 0.507705 1:+76850442 None:intergenic
AATGAGCCACGCTTGATGCC+AGG 0.516151 1:+76851368 None:intergenic
AAGCTTGAAGATGATAGATC+TGG 0.524702 1:-76850579 MsaT005029.1:CDS
GCAAAAGTTGCCGGCTTCGG+TGG 0.528545 1:-76851406 MsaT005029.1:CDS
CCTGATGAAATAGGATTCCT+GGG 0.529222 1:-76850489 MsaT005029.1:CDS
AGCAGAGACGAGGCTGTCGT+TGG 0.533698 1:-76850952 MsaT005029.1:CDS
TGGATAAACTATCTCCGTCC+TGG 0.539879 1:-76851386 MsaT005029.1:CDS
CCCATTTAAAGAAACGTGTC+CGG 0.543989 1:-76851079 MsaT005029.1:CDS
CACTTTCCCACTGGGCCATG+TGG 0.548011 1:+76850985 None:intergenic
GCTATAGCAGCTCAACTACC+AGG 0.548333 1:-76851137 MsaT005029.1:CDS
TACATCAACAAACATGGCCA+TGG 0.548377 1:-76853433 MsaT005029.1:CDS
ACCCCATGTTTCTCACAACA+AGG 0.549162 1:+76853502 None:intergenic
TGGCCCAGTGGGAAAGTGCA+AGG 0.553498 1:-76850980 MsaT005029.1:CDS
AGAAATTGTCAGTATGTCCC+AGG 0.567136 1:+76850472 None:intergenic
ATGGGGTGAAAAGAGGAGCT+TGG 0.568068 1:-76853486 MsaT005029.1:CDS
CCCATGTTTCTCACAACAAG+GGG 0.570733 1:+76853504 None:intergenic
GAAGCGTACGCCAACTCCCA+TGG 0.573185 1:+76853416 None:intergenic
TTCCTATCAGGAAGGAGACA+TGG 0.573818 1:+76851035 None:intergenic
GAGAAACATGGGGTGAAAAG+AGG 0.581259 1:-76853493 MsaT005029.1:CDS
CCCCTTGTTGTGAGAAACAT+GGG 0.582114 1:-76853504 MsaT005029.1:CDS
ACGTGTCCGGCAGTCACTAA+GGG 0.585904 1:-76851066 MsaT005029.1:CDS
GAGGTACCTGTTGCCAAGCA+TGG 0.589470 1:+76851307 None:intergenic
TTCTCCTTCTACACGCCACA+TGG 0.594285 1:-76851000 MsaT005029.1:CDS
CTCCGTCCTGGCATCAAGCG+TGG 0.596733 1:-76851374 MsaT005029.1:CDS
TACACGCCACATGGCCCAGT+GGG 0.601016 1:-76850991 MsaT005029.1:CDS
GCCCCTTGTTGTGAGAAACA+TGG 0.603365 1:-76853505 MsaT005029.1:CDS
CCCCATGTTTCTCACAACAA+GGG 0.611520 1:+76853503 None:intergenic
CGTACGCTTCCTAAACATGC+AGG 0.612439 1:-76853403 MsaT005029.1:intron
GGCCCAGTGGGAAAGTGCAA+GGG 0.612508 1:-76850979 MsaT005029.1:CDS
CAAGGGTTGAAGCAGAGACG+AGG 0.615393 1:-76850962 MsaT005029.1:CDS
AGAGCCTGAATTAAGCAAAG+TGG 0.615810 1:+76850926 None:intergenic
TTTCATCAGGCATACGCAGT+AGG 0.616891 1:+76850502 None:intergenic
ACATCAACAAACATGGCCAT+GGG 0.633448 1:-76853432 MsaT005029.1:CDS
AGCCACGCTTGATGCCAGGA+CGG 0.639664 1:+76851372 None:intergenic
GTTGGAGAGAAATTCCGCGC+AGG 0.642387 1:-76850855 MsaT005029.1:CDS
TCATCAGAGAAATTCCGCGC+AGG 0.645601 1:-76850786 MsaT005029.1:CDS
GTTGACTACATCAACAAACA+TGG 0.659740 1:-76853439 MsaT005029.1:CDS
ACTGGGCATTCCTATCAGGA+AGG 0.663389 1:+76851027 None:intergenic
CAAGTAGGTCTCCTAAGATG+CGG 0.667276 1:-76851428 MsaT005029.1:intron
TGTAGAAGGAGAATTAGACT+GGG 0.703666 1:+76851010 None:intergenic
CTACACGCCACATGGCCCAG+TGG 0.712167 1:-76850992 MsaT005029.1:CDS
TTTGACACACTACTCCTGCG+CGG 0.770508 1:+76850772 None:intergenic
TTTGACACACTACTCCTGCG+CGG 0.770508 1:+76850841 None:intergenic
CCCTTGTTGTGAGAAACATG+GGG 0.801692 1:-76853503 MsaT005029.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 76850440 76853536 76850440 ID=MsaG005029
Chr1 mRNA 76850440 76853536 76850440 ID=MsaT005029.1;Parent=MsaG005029
Chr1 exon 76850440 76851166 76850440 ID=MsaT005029.1.exon3;Parent=MsaT005029.1
Chr1 CDS 76850440 76851166 76850440 ID=cds.MsaT005029.1;Parent=MsaT005029.1
Chr1 exon 76851314 76851443 76851314 ID=MsaT005029.1.exon2;Parent=MsaT005029.1
Chr1 CDS 76851314 76851443 76851314 ID=cds.MsaT005029.1;Parent=MsaT005029.1
Chr1 exon 76853404 76853536 76853404 ID=MsaT005029.1.exon1;Parent=MsaT005029.1
Chr1 CDS 76853404 76853536 76853404 ID=cds.MsaT005029.1;Parent=MsaT005029.1
Gene Sequence

>MsaT005029.1

ATGGGTAAAGCCCCTTGTTGTGAGAAACATGGGGTGAAAAGAGGAGCTTGGACTCCTGAAGAAGATGAAGCTTTAGTTGACTACATCAACAAACATGGCCATGGGAGTTGGCGTACGCTTCCTAAACATGCAGGTCTCCTAAGATGCGGCAAAAGTTGCCGGCTTCGGTGGATAAACTATCTCCGTCCTGGCATCAAGCGTGGCTCATTTACTAATGAAGAAGAAACTACTATTATTCAACTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCAGCTCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATTTAAAGAAACGTGTCCGGCAGTCACTAAGGGAAAAACATCCATGTCTCCTTCCTGATAGGAATGCCCAGTCTAATTCTCCTTCTACACGCCACATGGCCCAGTGGGAAAGTGCAAGGGTTGAAGCAGAGACGAGGCTGTCGTTGGAGTCCACTTTGCTTAATTCAGGCTCTACGACTAAAACATATCCTGATTACTTTCTTCAACTTTGGCATTCTGATGTTGGAGAGAAATTCCGCGCAGGAGTAGTGTGTCAAAGCATTGTCTCACAAGCATCATCATCATCACTATCATCAGAGAAATTCCGCGCAGGAGTAGTGTGTCAAAGCATTGTCTCACAAGCATCATCATCATCACTATCATCATCAAAATTGGAGTCATGTTCAGACGTCTCATTGCAGGTGAAAAACAACGAAACACAAAGCCTGAAAGTGTCGACAACAAAGCTTGAAGATGTTGACGTGATTCAGGAACAAAAAGCCAGTAACTACAAACTGAAGCTTGAAGATGATAGATCTGGTTCAGATTCAGGAAATTACGAGTTTCTTGATACTTCTGATTCTGCACTGAAGCACCTACTGCGTATGCCTGATGAAATAGGATTCCTGGGACATACTGACAATTTCTTGAATCTCCTTGATTACGGAAGATGTGACTAA

Protein sequence

>MsaT005029.1

MGKAPCCEKHGVKRGAWTPEEDEALVDYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGSFTNEEETTIIQLHAMLGNRWAAIAAQLPGRTDNEIKNYWNTHLKKRVRQSLREKHPCLLPDRNAQSNSPSTRHMAQWESARVEAETRLSLESTLLNSGSTTKTYPDYFLQLWHSDVGEKFRAGVVCQSIVSQASSSSLSSEKFRAGVVCQSIVSQASSSSLSSSKLESCSDVSLQVKNNETQSLKVSTTKLEDVDVIQEQKASNYKLKLEDDRSGSDSGNYEFLDTSDSALKHLLRMPDEIGFLGHTDNFLNLLDYGRCD*