AlfalfaGEDB | MsaG005043

M. sativa ssp. caerulea / MsaG005043

KEGG: K09419
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005043	XP_013469699.1	91.776	304	23	2	1	303	1	303	0.0	538

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005043	sp\|Q6Z9C8\|HFB2B_ORYSJ	46.226	318	113	9	9	281	39	343	6.76e-76	240

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005043	tr\|A0A072VPK5\|A0A072VPK5_MEDTR	91.776	304	23	2	1	303	1	303	0.0	538

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005043	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005043	MtrunA17_Chr1g0203601	91.776	304	23	2	1	303	1	303	0.0	538
MsaG005043	MtrunA17_Chr6g0472421	56.386	321	105	9	10	301	25	339	1.25e-102	303
MsaG005043	MtrunA17_Chr5g0397881	48.829	299	101	9	5	252	6	303	1.93e-76	237
MsaG005043	MtrunA17_Chr5g0441531	42.105	247	118	5	10	249	17	245	3.74e-57	184
MsaG005043	MtrunA17_Chr3g0134031	44.907	216	89	4	10	196	16	230	1.33e-56	187
MsaG005043	MtrunA17_Chr5g0402291	48.634	183	70	3	11	178	2	175	9.33e-52	172
MsaG005043	MtrunA17_Chr7g0257331	38.610	259	111	4	12	270	16	226	3.49e-49	163
MsaG005043	MtrunA17_Chr8g0375041	49.405	168	72	4	11	178	2	156	1.17e-45	155
MsaG005043	MtrunA17_Chr5g0410881	65.957	94	32	0	16	109	30	123	2.15e-41	149
MsaG005043	MtrunA17_Chr7g0260331	60.638	94	37	0	16	109	47	140	2.95e-40	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005043	AT5G62020.1	44.013	309	132	7	11	303	16	299	1.18e-75	234
MsaG005043	AT4G11660.1	47.887	284	99	5	10	252	51	326	8.19e-71	224
MsaG005043	AT1G46264.1	48.039	204	86	3	13	196	29	232	3.26e-58	191
MsaG005043	AT4G36990.1	48.500	200	85	2	11	201	7	197	5.56e-54	177
MsaG005043	AT2G41690.1	46.111	180	97	0	16	195	38	217	9.49e-45	152
MsaG005043	AT4G17750.1	65.000	100	35	0	14	113	48	147	2.19e-41	150
MsaG005043	AT3G22830.1	64.583	96	34	0	14	109	57	152	6.82e-40	144
MsaG005043	AT1G32330.2	60.748	107	37	1	16	122	35	136	2.09e-39	144
MsaG005043	AT1G32330.1	60.748	107	37	1	16	122	35	136	2.16e-39	144
MsaG005043	AT3G02990.1	62.500	96	36	0	14	109	19	114	6.51e-38	140

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Find 80 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGTACCTGATCGGT+GGG	0.563579	1:+77023271	MsaT005043.1:CDS
AAATCCCTAGCGAAAACGGT+AGG	0.568543	1:-77023111	None:intergenic
AAATTACGCGAATTCTCAAT+CGG	0.544595	1:+77023610	MsaT005043.1:CDS
AACAAACGAAGTGTCTTCAC+TGG	0.512152	1:-77023674	None:intergenic
AAGCAAATCCCTAGCGAAAA+CGG	0.486758	1:-77023115	None:intergenic
AATCAGAGCCGTTTGATTCA+AGG	0.418470	1:+77023852	MsaT005043.1:CDS
AATCCCTAGCGAAAACGGTA+GGG	0.608706	1:-77023110	None:intergenic
AATCGTTTCAGCATCGCCGG+CGG	0.666535	1:+77023358	MsaT005043.1:CDS
ACAAACGAAGTGTCTTCACT+GGG	0.603590	1:-77023673	None:intergenic
ACGGTGTATTGAGGATGATG+TGG	0.668550	1:+77023796	MsaT005043.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	77022964	77023943	77022964	ID=MsaG005043
Chr1	mRNA	77022964	77023943	77022964	ID=MsaT005043.1;Parent=MsaG005043
Chr1	exon	77022964	77023194	77022964	ID=MsaT005043.1.exon1;Parent=MsaT005043.1
Chr1	CDS	77022964	77023194	77022964	ID=cds.MsaT005043.1;Parent=MsaT005043.1
Chr1	exon	77023263	77023943	77023263	ID=MsaT005043.1.exon2;Parent=MsaT005043.1
Chr1	CDS	77023263	77023943	77023263	ID=cds.MsaT005043.1;Parent=MsaT005043.1

Gene Sequence

>MsaT005043.1

ATGGCTCAGTCGGTGGAACATAACGGCGAGTCTCAAAGATCCACTCCGACGCCGTTTCTCACCAAGACATATCACCTTGTTGATGAAATCGCCACCAACGATGTGATTTCGTGGAATGATACTGGAACAACGTTCATCGTTTGGAACCCTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTTCGCCAACTCAATACTTATGGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTCTCTAATGAATCTTTCCGACGAGGCGAGGAACGGCTTCTCTGTGATATTCAGCGACGGAAAATCGTTTCAGCATCGCCGGCGGCAGCTTCCAATGCCGGCACGACTGTAACAAAAGCGGTTCCGACAGCAAAGCCTATCGCGTCGCCGTCAATTTCAGGGGAGGAGCAGGTGATTTCTTCGAATTCCTCGCCGTCAGTTTCTCCGGCGGCGCTATTAGACGAGAATGAGAGGTTGAGAAAGGAGAACATGCAGTTAACAAAGGAAATAGAGGACATGAAATCGCTCTACAACAATATATTCAATCTTCTGTCAAATTACGCGAATTCTCAATCGGAAAGCGGTGCGGAAGGAAAAGAATGTTGCTCAACGGCGTCCCCAGTGAAGACACTTCGTTTGTTACCGGAGAAGCGATGCAACGGCGAAGATGCGGCGGTGGAAGATAGAAACCCGAAGCTGTTTGGGATAGCGATTGATGCGAAGGGAGCGAGAGGAGAAGGACGGTGTATTGAGGATGATGTGGTGTTGAGCCTAAATCATTCTGTTCATGACGTGAAATCAGAGCCGTTTGATTCAAGGAAGGGTGAAAAGAGGAAAATGATGCGGTTAAATCAGTGCTATAGAGCGAATCAGAGTGTGTGCAATTGA

Protein sequence

>MsaT005043.1

MAQSVEHNGESQRSTPTPFLTKTYHLVDEIATNDVISWNDTGTTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNESFRRGEERLLCDIQRRKIVSASPAAASNAGTTVTKAVPTAKPIASPSISGEEQVISSNSSPSVSPAALLDENERLRKENMQLTKEIEDMKSLYNNIFNLLSNYANSQSESGAEGKECCSTASPVKTLRLLPEKRCNGEDAAVEDRNPKLFGIAIDAKGARGEGRCIEDDVVLSLNHSVHDVKSEPFDSRKGEKRKMMRLNQCYRANQSVCN*