AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005086

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005086 MtrunA17_Chr1g0204111 93.496 246 9 1 1 246 17 255 5.14e-169 466
MsaG005086 MtrunA17_Chr6g0474371 68.023 172 54 1 1 171 1 172 2.17e-75 227
MsaG005086 MtrunA17_Chr8g0351051 43.511 262 118 7 1 244 1 250 1.63e-60 191
MsaG005086 MtrunA17_Chr6g0455511 48.588 177 88 2 1 176 1 175 3.18e-50 164
MsaG005086 MtrunA17_Chr7g0220111 47.486 179 91 2 1 178 1 177 8.50e-49 160
MsaG005086 MtrunA17_Chr3g0122251 47.429 175 81 3 1 168 1 171 3.67e-47 156
MsaG005086 MtrunA17_Chr5g0420091 46.111 180 95 2 1 179 1 179 2.11e-46 154
MsaG005086 MtrunA17_Chr4g0061691 49.412 170 82 3 1 168 1 168 1.17e-43 147
MsaG005086 MtrunA17_Chr4g0061671 42.857 182 100 2 1 181 1 179 6.45e-41 139
MsaG005086 MtrunA17_Chr8g0366231 46.471 170 87 3 1 168 1 168 2.22e-39 136
MsaG005086 MtrunA17_Chr5g0420081 45.882 170 88 3 1 168 1 168 1.09e-37 132
MsaG005086 MtrunA17_Chr8g0351031 37.611 226 132 4 1 224 1 219 3.58e-37 130
MsaG005086 MtrunA17_Chr7g0220121 45.029 171 86 5 1 168 1 166 8.13e-36 127
MsaG005086 MtrunA17_Chr3g0097101 36.279 215 121 4 1 201 16 228 3.78e-35 125
MsaG005086 MtrunA17_Chr4g0057151 42.021 188 107 2 1 188 1 186 4.15e-35 124
MsaG005086 MtrunA17_Chr3g0077501 39.429 175 105 1 1 175 1 174 5.05e-35 124
MsaG005086 MtrunA17_Chr8g0351041 42.405 158 91 0 1 158 1 158 5.57e-35 122
MsaG005086 MtrunA17_Chr7g0246431 45.223 157 83 2 1 156 1 155 9.40e-35 124
MsaG005086 MtrunA17_Chr5g0411691 41.520 171 97 1 1 171 1 168 1.32e-34 124
MsaG005086 MtrunA17_Chr2g0284911 40.385 156 92 1 1 156 16 170 1.53e-34 124
MsaG005086 MtrunA17_Chr2g0279821 37.674 215 119 3 1 207 1 208 9.38e-34 122
MsaG005086 MtrunA17_Chr8g0380021 40.120 167 96 2 1 164 17 182 1.69e-33 121
MsaG005086 MtrunA17_Chr1g0164791 43.590 156 81 4 1 149 1 156 1.90e-29 110
MsaG005086 MtrunA17_Chr4g0049541 35.023 217 108 7 1 194 1 207 2.69e-29 109
MsaG005086 MtrunA17_Chr4g0020221 41.509 159 86 4 1 155 1 156 5.78e-28 107
MsaG005086 MtrunA17_Chr5g0412461 39.655 174 92 3 1 168 1 167 1.95e-27 105
MsaG005086 MtrunA17_Chr5g0427401 38.150 173 100 2 1 171 1 168 3.02e-27 104
MsaG005086 MtrunA17_Chr5g0412271 32.759 232 131 4 1 217 1 222 4.88e-27 103
MsaG005086 MtrunA17_Chr4g0049901 38.824 170 92 3 1 163 27 191 7.53e-27 103
MsaG005086 MtrunA17_Chr5g0404951 37.572 173 98 3 1 168 1 168 1.08e-25 100
MsaG005086 MtrunA17_Chr3g0125241 36.313 179 93 5 1 176 26 186 1.20e-25 99.8
MsaG005086 MtrunA17_Chr4g0018421 34.975 203 116 5 1 195 1 195 1.47e-25 99.8
MsaG005086 MtrunA17_Chr1g0159661 39.130 161 88 4 1 157 1 155 2.64e-25 98.2
MsaG005086 MtrunA17_Chr2g0308251 68.116 69 22 0 1 69 1 69 6.44e-25 94.4
MsaG005086 MtrunA17_Chr7g0246381 71.667 60 17 0 1 60 1 60 6.24e-24 91.3
MsaG005086 MtrunA17_Chr3g0142191 31.746 189 117 3 1 183 1 183 9.74e-24 95.5
MsaG005086 MtrunA17_Chr8g0377561 74.138 58 15 0 1 58 1 58 3.04e-23 90.5
MsaG005086 MtrunA17_Chr1g0173161 69.355 62 19 0 1 62 1 62 2.03e-22 87.8
MsaG005086 MtrunA17_Chr5g0427921 60.000 60 24 0 1 60 1 60 4.23e-19 78.6
MsaG005086 MtrunA17_Chr1g0208561 51.471 68 33 0 2 69 9 76 2.51e-18 80.9
MsaG005086 MtrunA17_Chr3g0089141 51.471 68 33 0 2 69 9 76 2.70e-18 80.9
MsaG005086 MtrunA17_Chr8g0357771 44.928 69 38 0 1 69 1 69 2.06e-17 77.4
MsaG005086 MtrunA17_Chr4g0044071 58.621 58 24 0 1 58 1 58 2.27e-17 75.5
MsaG005086 MtrunA17_Chr8g0376821 43.333 90 47 1 1 90 1 86 2.36e-17 77.4
MsaG005086 MtrunA17_Chr2g0292791 51.471 68 33 0 2 69 9 76 2.45e-17 78.6
MsaG005086 MtrunA17_Chr2g0325971 50.000 68 34 0 2 69 9 76 2.59e-17 78.2
MsaG005086 MtrunA17_Chr8g0355091 50.000 68 34 0 2 69 9 76 4.56e-17 77.8
MsaG005086 MtrunA17_Chr3g0099411 50.000 68 34 0 2 69 9 76 4.63e-17 77.4
MsaG005086 MtrunA17_Chr1g0206701 50.000 68 34 0 2 69 9 76 4.89e-17 77.8
MsaG005086 MtrunA17_Chr3g0099421 52.941 68 32 0 2 69 34 101 5.19e-17 77.8
MsaG005086 MtrunA17_Chr3g0134451 54.286 70 31 1 1 69 1 70 5.47e-17 78.6
MsaG005086 MtrunA17_Chr1g0149391 52.941 68 32 0 2 69 9 76 6.12e-17 77.4
MsaG005086 MtrunA17_Chr1g0187361 51.471 68 33 0 2 69 9 76 6.64e-17 77.4
MsaG005086 MtrunA17_Chr1g0206721 50.000 68 34 0 2 69 9 76 7.65e-17 77.0
MsaG005086 MtrunA17_Chr1g0188671 52.941 68 32 0 2 69 47 114 7.78e-17 77.8
MsaG005086 MtrunA17_Chr5g0419601 52.174 69 33 0 1 69 8 76 1.17e-16 76.6
MsaG005086 MtrunA17_Chr1g0169761 47.887 71 37 0 1 71 1 71 1.35e-16 75.1
MsaG005086 MtrunA17_Chr1g0180591 46.479 71 38 0 1 71 1 71 1.82e-16 74.7
MsaG005086 MtrunA17_Chr2g0317451 51.471 68 33 0 2 69 9 76 1.98e-16 75.9
MsaG005086 MtrunA17_Chr1g0208581 48.529 68 35 0 2 69 9 76 2.06e-16 75.9
MsaG005086 MtrunA17_Chr3g0119901 47.826 69 36 0 1 69 8 76 2.07e-16 75.5
MsaG005086 MtrunA17_Chr2g0317481 51.471 68 33 0 2 69 9 76 2.22e-16 75.9
MsaG005086 MtrunA17_Chr4g0074101 46.479 71 38 0 1 71 1 71 2.27e-16 75.1
MsaG005086 MtrunA17_Chr5g0425191 60.345 58 23 0 1 58 1 58 2.54e-16 72.4
MsaG005086 MtrunA17_Chr1g0175611 47.826 69 36 0 1 69 1 69 3.43e-16 73.9
MsaG005086 MtrunA17_Chr4g0018951 34.483 145 83 4 16 152 26 166 4.00e-16 73.6
MsaG005086 MtrunA17_Chr1g0166611 65.385 52 17 1 16 66 20 71 6.17e-16 72.4
MsaG005086 MtrunA17_Chr3g0085241 46.377 69 37 0 1 69 40 108 8.88e-16 74.3
MsaG005086 MtrunA17_Chr4g0052081 44.928 69 38 0 1 69 1 69 1.10e-15 72.8
MsaG005086 MtrunA17_Chr1g0175601 47.826 69 36 0 1 69 1 69 1.23e-15 72.8
MsaG005086 MtrunA17_Chr5g0422421 51.471 68 33 0 2 69 9 76 2.35e-15 73.2
MsaG005086 MtrunA17_Chr8g0379021 28.022 182 103 5 2 177 12 171 2.39e-15 71.6
MsaG005086 MtrunA17_Chr4g0052061 46.377 69 37 0 1 69 1 69 2.75e-15 71.2
MsaG005086 MtrunA17_Chr2g0300421 48.529 68 35 0 2 69 9 76 3.06e-15 71.2
MsaG005086 MtrunA17_Chr1g0206991 45.588 68 37 0 2 69 9 76 3.97e-15 71.2
MsaG005086 MtrunA17_Chr5g0422941 48.529 68 35 0 2 69 9 76 6.30e-15 72.0
MsaG005086 MtrunA17_Chr2g0333981 44.928 69 38 0 1 69 11 79 9.53e-15 70.1
MsaG005086 MtrunA17_Chr3g0089151 45.588 68 37 0 2 69 9 76 1.43e-14 68.6
MsaG005086 MtrunA17_Chr4g0060841 46.575 73 37 1 1 71 1 73 5.48e-14 70.5
MsaG005086 MtrunA17_Chr8g0377551 34.286 105 69 0 64 168 3 107 6.00e-14 68.2
MsaG005086 MtrunA17_Chr8g0356071 40.845 71 42 0 1 71 1 71 3.07e-13 65.9
MsaG005086 MtrunA17_Chr2g0300441 44.118 68 38 0 2 69 9 76 1.09e-12 65.5
MsaG005086 MtrunA17_Chr1g0206691 49.153 59 30 0 11 69 1 59 1.24e-12 65.1
MsaG005086 MtrunA17_Chr3g0111841 50.000 60 30 0 7 66 1 60 4.30e-12 60.1
MsaG005086 MtrunA17_Chr4g0071601 44.928 69 38 0 1 69 11 79 1.22e-11 62.0
MsaG005086 MtrunA17_Chr5g0417661 49.057 53 27 0 1 53 56 108 2.77e-11 59.7
MsaG005086 MtrunA17_Chr1g0187351 45.763 59 32 0 11 69 1 59 6.41e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005086 AT2G45650.1 42.857 231 117 4 1 218 1 229 5.98e-54 174
MsaG005086 AT3G61120.1 51.412 177 81 3 1 175 1 174 5.77e-53 172
MsaG005086 AT1G24260.1 47.977 173 82 3 1 168 1 170 6.60e-46 154
MsaG005086 AT3G02310.2 44.199 181 99 2 1 180 1 180 2.16e-45 151
MsaG005086 AT3G02310.1 44.886 176 95 2 1 175 1 175 1.22e-44 150
MsaG005086 AT1G24260.2 47.368 171 87 2 1 168 1 171 2.17e-44 150
MsaG005086 AT5G15800.1 44.886 176 95 2 1 175 1 175 3.12e-44 149
MsaG005086 AT5G15800.2 44.886 176 95 2 1 175 1 175 5.98e-44 149
MsaG005086 AT1G24260.3 44.134 179 97 2 1 176 1 179 1.74e-43 147
MsaG005086 AT2G03710.2 33.721 258 155 5 1 244 1 256 4.42e-41 141
MsaG005086 AT2G03710.1 39.267 191 112 2 1 189 1 189 5.56e-41 141
MsaG005086 AT5G60910.1 47.059 170 86 3 1 168 1 168 5.85e-41 140
MsaG005086 AT1G69120.2 46.512 172 84 3 1 168 1 168 1.54e-40 139
MsaG005086 AT2G03710.3 42.197 173 96 2 1 171 1 171 2.32e-40 137
MsaG005086 AT1G69120.1 46.512 172 84 3 1 168 1 168 5.06e-40 139
MsaG005086 AT1G26310.1 39.352 216 113 6 1 208 1 206 3.35e-39 137
MsaG005086 AT4G18960.1 35.593 236 138 5 2 231 18 245 4.86e-37 131
MsaG005086 AT3G57230.1 35.865 237 136 4 1 230 1 228 4.89e-37 130
MsaG005086 AT3G57230.4 35.865 237 136 4 1 230 1 228 4.89e-37 130
MsaG005086 AT4G22950.3 45.977 174 86 2 1 171 1 169 1.67e-36 129
MsaG005086 AT4G22950.1 45.977 174 86 2 1 171 1 169 1.67e-36 129
MsaG005086 AT4G22950.2 45.977 174 86 2 1 171 1 169 1.86e-36 127
MsaG005086 AT5G62165.17 43.671 158 88 1 1 158 1 157 1.17e-35 124
MsaG005086 AT5G62165.12 43.671 158 88 1 1 158 1 157 1.17e-35 124
MsaG005086 AT5G62165.11 43.671 158 88 1 1 158 1 157 1.17e-35 124
MsaG005086 AT4G09960.2 40.741 162 95 1 1 162 1 161 1.79e-35 126
MsaG005086 AT5G62165.3 41.860 172 99 1 1 172 1 171 2.02e-35 125
MsaG005086 AT5G62165.1 41.860 172 99 1 1 172 1 171 2.02e-35 125
MsaG005086 AT5G62165.2 41.860 172 99 1 1 172 1 171 2.02e-35 125
MsaG005086 AT2G42830.2 39.506 162 97 1 1 162 16 176 3.49e-35 126
MsaG005086 AT4G09960.1 42.466 146 81 2 1 144 1 145 4.17e-35 125
MsaG005086 AT4G09960.5 43.537 147 78 3 1 144 11 155 4.53e-35 125
MsaG005086 AT4G09960.6 42.466 146 81 2 1 144 2 146 4.56e-35 125
MsaG005086 AT2G45660.2 43.671 158 88 1 1 158 1 157 6.12e-35 122
MsaG005086 AT4G09960.3 42.466 146 81 2 1 144 27 171 1.28e-34 125
MsaG005086 AT2G45660.1 39.896 193 106 2 1 193 1 183 1.31e-34 124
MsaG005086 AT4G11880.2 46.951 164 74 3 1 158 1 157 1.69e-34 122
MsaG005086 AT4G11880.3 46.951 164 74 3 1 158 1 157 1.69e-34 122
MsaG005086 AT5G62165.10 44.966 149 81 1 1 149 1 148 1.93e-34 122
MsaG005086 AT5G62165.4 44.966 149 81 1 1 149 1 148 1.93e-34 122
MsaG005086 AT2G42830.1 38.596 171 104 1 1 171 16 185 5.13e-34 123
MsaG005086 AT4G09960.4 42.466 146 81 2 1 144 96 240 7.65e-34 124
MsaG005086 AT3G58780.5 37.427 171 106 1 1 171 22 191 1.44e-33 122
MsaG005086 AT3G58780.1 37.427 171 106 1 1 171 16 185 1.58e-33 122
MsaG005086 AT5G62165.6 44.898 147 80 1 1 147 1 146 2.00e-33 119
MsaG005086 AT5G62165.9 44.898 147 80 1 1 147 1 146 2.00e-33 119
MsaG005086 AT5G62165.7 44.898 147 80 1 1 147 1 146 2.00e-33 119
MsaG005086 AT5G62165.8 44.898 147 80 1 1 147 1 146 2.00e-33 119
MsaG005086 AT5G62165.13 44.898 147 80 1 1 147 1 146 2.00e-33 119
MsaG005086 AT3G30260.1 45.161 155 77 3 1 151 1 151 2.75e-33 121
MsaG005086 AT3G57230.2 43.919 148 78 2 1 148 1 143 3.49e-33 118
MsaG005086 AT3G58780.4 40.541 148 87 1 1 148 16 162 2.04e-32 120
MsaG005086 AT4G37940.1 40.113 177 92 3 1 171 1 169 2.38e-32 118
MsaG005086 AT4G11880.4 47.712 153 67 3 1 147 1 146 1.37e-31 116
MsaG005086 AT4G11880.1 47.712 153 67 3 1 147 1 146 1.37e-31 116
MsaG005086 AT4G37940.4 38.798 183 98 3 1 177 1 175 1.92e-31 115
MsaG005086 AT4G37940.3 43.836 146 68 3 1 140 1 138 7.61e-31 112
MsaG005086 AT5G13790.2 41.520 171 89 3 1 168 1 163 2.59e-30 114
MsaG005086 AT5G13790.1 43.275 171 83 3 1 168 1 160 3.91e-30 113
MsaG005086 AT3G58780.2 36.257 171 101 2 1 171 16 178 7.12e-30 112
MsaG005086 AT2G22630.1 37.321 209 115 4 1 201 1 201 1.61e-29 110
MsaG005086 AT2G22630.2 37.321 209 115 4 1 201 1 201 1.61e-29 110
MsaG005086 AT2G14210.2 41.279 172 94 3 1 169 1 168 1.01e-28 108
MsaG005086 AT2G14210.1 41.279 172 94 3 1 169 1 168 1.02e-28 108
MsaG005086 AT3G58780.3 33.163 196 105 2 1 171 16 210 5.87e-28 108
MsaG005086 AT5G51860.2 37.195 164 96 1 1 157 1 164 1.44e-27 105
MsaG005086 AT5G51860.1 37.195 164 96 1 1 157 1 164 1.70e-27 105
MsaG005086 AT2G22540.3 36.923 195 103 5 1 182 1 188 4.73e-27 104
MsaG005086 AT2G22540.1 36.923 195 103 5 1 182 1 188 4.73e-27 104
MsaG005086 AT5G20240.1 39.474 152 84 3 1 150 1 146 7.01e-27 103
MsaG005086 AT5G51870.1 40.110 182 95 5 1 171 1 179 1.95e-26 102
MsaG005086 AT5G51870.2 41.333 150 82 3 1 147 1 147 3.04e-26 100
MsaG005086 AT5G51870.5 41.333 150 82 3 1 147 24 170 3.99e-26 101
MsaG005086 AT5G20240.2 39.726 146 80 3 1 144 1 140 5.14e-26 99.8
MsaG005086 AT5G51870.4 38.144 194 105 6 1 182 1 191 9.43e-26 100
MsaG005086 AT5G62165.14 49.495 99 45 1 1 99 1 94 9.68e-26 97.4
MsaG005086 AT5G51870.3 38.342 193 104 6 1 181 11 200 9.86e-26 101
MsaG005086 AT3G57390.3 35.025 197 102 3 1 179 1 189 1.95e-25 100
MsaG005086 AT3G57390.1 35.025 197 102 3 1 179 1 189 2.51e-25 100
MsaG005086 AT4G24540.1 37.931 174 101 2 1 171 1 170 5.19e-25 99.0
MsaG005086 AT2G22540.2 37.436 195 97 6 1 182 1 183 1.16e-24 98.6
MsaG005086 AT5G10140.4 36.257 171 97 4 1 169 1 161 1.24e-24 97.1
MsaG005086 AT5G23260.2 32.934 167 106 2 1 165 1 163 2.55e-23 95.1
MsaG005086 AT5G23260.4 32.934 167 106 2 1 165 17 179 3.68e-23 95.1
MsaG005086 AT5G10140.1 37.662 154 84 4 1 152 1 144 5.24e-23 93.2
MsaG005086 AT5G23260.3 32.778 180 112 3 1 178 1 173 5.71e-23 94.0
MsaG005086 AT5G65050.2 36.416 173 98 4 1 171 1 163 5.85e-23 92.4
MsaG005086 AT5G10140.2 37.662 154 84 4 1 152 1 144 6.46e-23 92.0
MsaG005086 AT5G23260.1 35.374 147 89 2 1 145 17 159 7.17e-23 94.4
MsaG005086 AT5G10140.3 37.662 154 84 4 1 152 1 144 1.09e-22 92.0
MsaG005086 AT5G65050.1 37.654 162 89 4 1 160 1 152 1.19e-22 91.7
MsaG005086 AT5G65050.3 36.416 173 98 4 1 171 1 163 2.16e-22 91.3
MsaG005086 AT1G71692.1 35.567 194 106 3 1 181 1 188 2.49e-22 91.7
MsaG005086 AT5G65080.3 37.931 174 93 5 1 172 8 168 3.05e-22 90.9
MsaG005086 AT5G65060.3 37.342 158 87 4 1 156 1 148 1.13e-21 89.4
MsaG005086 AT5G65060.1 37.342 158 87 4 1 156 1 148 1.27e-21 89.4
MsaG005086 AT5G65070.1 37.059 170 95 4 1 168 1 160 1.55e-21 89.4
MsaG005086 AT5G65050.5 36.571 175 84 6 1 171 1 152 5.27e-21 87.4
MsaG005086 AT5G65070.4 38.158 152 82 4 1 150 1 142 6.88e-21 86.3
MsaG005086 AT2G34440.1 33.889 180 104 5 1 180 1 165 1.06e-20 86.3
MsaG005086 AT5G65060.2 37.500 160 73 5 1 156 1 137 1.25e-20 86.7
MsaG005086 AT3G54340.1 32.323 198 108 6 1 185 1 185 2.24e-20 87.0
MsaG005086 AT5G65070.5 35.359 181 94 5 1 158 1 181 2.52e-20 86.3
MsaG005086 AT1G77080.11 37.572 173 96 4 1 171 1 163 3.58e-20 85.1
MsaG005086 AT5G65070.2 34.555 191 102 5 1 168 1 191 4.39e-20 86.3
MsaG005086 AT1G77080.4 37.572 173 96 4 1 171 1 163 4.83e-20 85.1
MsaG005086 AT1G77080.5 37.572 173 96 4 1 171 1 163 9.40e-20 84.0
MsaG005086 AT1G77080.12 37.500 160 84 4 1 158 1 146 3.55e-19 81.6
MsaG005086 AT1G77080.2 35.838 173 95 4 1 171 1 159 5.04e-19 82.4
MsaG005086 AT5G65080.2 36.943 157 88 3 1 156 8 154 1.23e-18 81.6
MsaG005086 AT5G65070.3 59.016 61 25 0 1 61 1 61 4.76e-18 80.5
MsaG005086 AT1G77080.8 37.173 191 99 7 1 171 1 190 1.42e-17 79.3
MsaG005086 AT1G01530.1 50.746 67 33 0 1 67 6 72 2.07e-17 79.3
MsaG005086 AT1G65360.1 41.463 82 48 0 1 82 6 87 4.88e-17 77.8
MsaG005086 AT3G66656.1 45.714 70 38 0 1 70 1 70 1.64e-16 75.5
MsaG005086 AT1G22130.1 60.345 58 23 0 1 58 1 58 2.53e-16 77.4
MsaG005086 AT1G77980.1 51.429 70 33 1 1 69 1 70 2.95e-16 77.0
MsaG005086 AT5G60440.1 34.194 155 75 4 2 133 7 157 5.42e-16 76.3
MsaG005086 AT2G24840.1 44.872 78 41 1 1 78 62 137 2.83e-15 73.6
MsaG005086 AT1G31140.1 34.694 147 82 4 1 140 1 140 3.34e-15 72.4
MsaG005086 AT1G31140.2 35.135 148 82 4 1 140 1 142 9.30e-15 71.2
MsaG005086 AT1G77950.3 47.143 70 36 1 1 69 1 70 1.03e-14 72.0
MsaG005086 AT1G77950.2 47.143 70 36 1 1 69 1 70 1.03e-14 72.0
MsaG005086 AT1G77950.1 47.143 70 36 1 1 69 1 70 1.03e-14 72.0
MsaG005086 AT1G77950.4 47.143 70 36 1 1 69 1 70 1.03e-14 72.0
MsaG005086 AT4G36590.1 41.111 90 48 1 2 91 7 91 1.54e-14 71.2
MsaG005086 AT4G37435.1 50.000 70 34 1 1 69 1 70 2.06e-14 69.7
MsaG005086 AT1G72350.1 51.471 68 31 1 2 69 43 108 4.21e-14 69.7
MsaG005086 AT1G18750.4 42.466 73 40 1 1 71 1 73 1.46e-12 67.0
MsaG005086 AT1G18750.1 42.466 73 40 1 1 71 1 73 1.69e-12 66.6
MsaG005086 AT1G18750.3 42.466 73 40 1 1 71 1 73 2.24e-12 66.2
MsaG005086 AT1G47760.1 32.432 148 83 6 1 142 1 137 2.57e-12 63.9
MsaG005086 AT1G69540.1 50.943 53 26 0 1 53 1 53 1.68e-11 63.5
MsaG005086 AT3G04100.1 36.232 69 44 0 2 70 14 82 1.95e-11 62.0
MsaG005086 AT1G69540.2 50.943 53 26 0 1 53 1 53 2.40e-11 63.2
MsaG005086 AT2G03060.3 41.096 73 41 1 1 71 1 73 2.56e-11 63.2
MsaG005086 AT2G03060.7 41.096 73 41 1 1 71 1 73 2.56e-11 63.2
MsaG005086 AT2G03060.1 41.096 73 41 1 1 71 1 73 2.56e-11 63.2
MsaG005086 AT2G03060.2 41.096 73 41 1 1 71 1 73 2.93e-11 63.2

Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTGTGCATCAAGCAAAT+TGG 0.331354 1:+77481333 None:intergenic
CGTAGAATTGTCACAAATCT+TGG 0.374997 1:+77481390 None:intergenic
TGGAAAGAGTTGATGAATTA+CGG 0.376454 1:-77482585 MsaT005086.1:CDS
GGAAAGAGTTGATGAATTAC+GGG 0.390790 1:-77482584 MsaT005086.1:CDS
CCGTTTGAACATGTGACAAC+AGG 0.407535 1:-77481307 MsaT005086.1:CDS
GCAAAGTTTAGAGAAACAAT+TGG 0.440860 1:-77482736 MsaT005086.1:CDS
AGTATCAATACCTTTGTGTC+CGG 0.447909 1:+77482882 None:intergenic
GGGAAGACGGAAGGTGGTAA+TGG 0.453781 1:-77485037 MsaT005086.1:CDS
ATTTCAGATGCAAAAGCTGA+TGG 0.461771 1:-77482605 MsaT005086.1:intron
AGCAGTCGCAACAAGAACTT+TGG 0.485960 1:-77481014 MsaT005086.1:CDS
CCTGTTGTCACATGTTCAAA+CGG 0.491498 1:+77481307 None:intergenic
TTCTGTGTTATGTGATGCTG+AGG 0.491850 1:-77484935 MsaT005086.1:CDS
CAAGATTTGTGACAATTCTA+CGG 0.503579 1:-77481389 MsaT005086.1:CDS
ATGTCTGAGAATGGTGACTT+AGG 0.507758 1:-77483125 MsaT005086.1:CDS
CTCTGAGCATCAAAAGCTCC+TGG 0.511033 1:+77482924 None:intergenic
TGTCACATGTTCAAACGGAT+TGG 0.523134 1:+77481312 None:intergenic
AGTTGATGAATTACGGGAGG+AGG 0.524024 1:-77482578 MsaT005086.1:intron
TGCATTACAGGGCTTATACC+AGG 0.526283 1:-77482942 MsaT005086.1:intron
GCAGGTGCACAAGGTGGAGG+AGG 0.538079 1:-77482383 MsaT005086.1:intron
CTTAGGAGAACATGAGTCAC+AGG 0.542720 1:-77483108 MsaT005086.1:intron
TCAAGCATGAATCTCTTGCC+CGG 0.543384 1:-77482901 MsaT005086.1:CDS
CAACAAACAATTAGAATCCA+AGG 0.548535 1:-77482359 MsaT005086.1:intron
TTGGCAGGTGCACAAGGTGG+AGG 0.551211 1:-77482386 MsaT005086.1:intron
GAGAAAGCAAAATGGGAAGA+CGG 0.568280 1:-77485050 None:intergenic
GTATCAATACCTTTGTGTCC+GGG 0.570495 1:+77482883 None:intergenic
TAAATATTGGCAGGTGCACA+AGG 0.574681 1:-77482392 MsaT005086.1:intron
AAAGACAGGCAACAGATACA+AGG 0.575273 1:-77481052 MsaT005086.1:CDS
GTCGCAACAAGAACTTTGGA+TGG 0.579250 1:-77481010 MsaT005086.1:CDS
TTCAACAATATGTCTGAGAA+TGG 0.581718 1:-77483134 MsaT005086.1:CDS
ACAGATACAAGGACTGACAT+AGG 0.591773 1:-77481041 MsaT005086.1:CDS
AATCTCTTGCCCGGACACAA+AGG 0.605019 1:-77482892 MsaT005086.1:intron
CAAAATGGGAAGACGGAAGG+TGG 0.614756 1:-77485043 None:intergenic
GATATTGTTGTTACTCGAGA+CGG 0.616240 1:+77481360 None:intergenic
CGTTTGAACATGTGACAACA+GGG 0.618784 1:-77481306 MsaT005086.1:intron
ACATAACACAGAAAGTTCAA+AGG 0.619770 1:+77484945 None:intergenic
AAGCAAAATGGGAAGACGGA+AGG 0.642858 1:-77485046 None:intergenic
ATTGTTGTTACTCGAGACGG+TGG 0.647403 1:+77481363 None:intergenic
AAGAGTTGATGAATTACGGG+AGG 0.669627 1:-77482581 MsaT005086.1:CDS
ATATTGGCAGGTGCACAAGG+TGG 0.700029 1:-77482389 MsaT005086.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 77480998 77485061 77480998 ID=MsaG005086
Chr1 mRNA 77480998 77485061 77480998 ID=MsaT005086.1;Parent=MsaG005086
Chr1 exon 77480998 77481103 77480998 ID=MsaT005086.1.exon8;Parent=MsaT005086.1
Chr1 CDS 77480998 77481103 77480998 ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1 exon 77481307 77481428 77481307 ID=MsaT005086.1.exon7;Parent=MsaT005086.1
Chr1 CDS 77481307 77481428 77481307 ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1 exon 77482360 77482401 77482360 ID=MsaT005086.1.exon6;Parent=MsaT005086.1
Chr1 CDS 77482360 77482401 77482360 ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1 exon 77482579 77482620 77482579 ID=MsaT005086.1.exon5;Parent=MsaT005086.1
Chr1 CDS 77482579 77482620 77482579 ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1 exon 77482704 77482803 77482704 ID=MsaT005086.1.exon4;Parent=MsaT005086.1
Chr1 CDS 77482704 77482803 77482704 ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1 exon 77482893 77482954 77482893 ID=MsaT005086.1.exon3;Parent=MsaT005086.1
Chr1 CDS 77482893 77482954 77482893 ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1 exon 77483109 77483193 77483109 ID=MsaT005086.1.exon2;Parent=MsaT005086.1
Chr1 CDS 77483109 77483193 77483109 ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1 exon 77484880 77485061 77484880 ID=MsaT005086.1.exon1;Parent=MsaT005086.1
Chr1 CDS 77484880 77485061 77484880 ID=cds.MsaT005086.1;Parent=MsaT005086.1
Gene Sequence

>MsaT005086.1

ATGGGAAGACGGAAGGTGGTAATGGAGAGAATACATAACAAGATCAATAGACAAGTAACATTTTCAAAGAGAAGAAGTGGTTTGTTGAAGAAAGCCTTTGAACTTTCTGTGTTATGTGATGCTGAGGTTGCTCTTATCATTTTCTCCGGTCTTGGCAAGCTTTTTCAATACAGTACCACAGACTTGAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTGAGAATGGTGACTTAGGAGAACATGAGTCACAGGGCTTATACCAGGAGCTTTTGATGCTCAGAGTCAAGCATGAATCTCTTGCCCGGACACAAAGGAATTTTTTGGGGGAAGAAATCAATGCACTTAGCATAAAAGATTTGCAAAGTTTAGAGAAACAATTGGAGAGAACGCTTGCTCAAGCTCGAAAACACCAAATGCAAAAGCTGATGGAAAGAGTTGATGAATTACGGGAGGAGGTGCACAAGGTGGAGGAGGTCAACAAACAATTAGAATCCAAGGATAGAGATATAAACACCAAGATTTGTGACAATTCTACGGATTCCACCGTCTCGAGTAACAACAATATCATTACCAATTTGCTTGATGCACAAGCCAATCCGTTTGAACATGTGACAACAGGGCGGTTTCTGCACCTACAAGATGCTTCAAAAAGACAGGCAACAGATACAAGGACTGACATAGGACAAAGCAGTCGCAACAAGAACTTTGGATGGATGAATATTTGA
Protein sequence

>MsaT005086.1

MGRRKVVMERIHNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSGLGKLFQYSTTDLNKIIEKYRQCCFNNMSENGDLGEHESQGLYQELLMLRVKHESLARTQRNFLGEEINALSIKDLQSLEKQLERTLAQARKHQMQKLMERVDELREEVHKVEEVNKQLESKDRDINTKICDNSTDSTVSSNNNIITNLLDAQANPFEHVTTGRFLHLQDASKRQATDTRTDIGQSSRNKNFGWMNI*