AlfalfaGEDB | MsaG005086

M. sativa ssp. caerulea / MsaG005086

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0010016 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0035670 GO:0040007 GO:0045893 GO:0045935 GO:0046983 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048440 GO:0048443 GO:0048444 GO:0048445 GO:0048448 GO:0048449 GO:0048455 GO:0048457 GO:0048459 GO:0048461 GO:0048462 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048532 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0080112 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005086	XP_024625530.1	93.496	246	9	1	1	246	17	255	5.59e-165	466

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005086	sp\|Q7XUN2\|MAD17_ORYSJ	50.711	211	94	2	1	205	1	207	3.27e-64	203

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005086	tr\|A0A396JX64\|A0A396JX64_MEDTR	93.496	246	9	1	1	246	17	255	2.67e-165	466

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005086	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003188	MsaG005086	0.807192	9.680122e-50	1.545106e-47
MsaG005086	MsaG016540	0.804481	3.570592e-49	5.348405e-47
MsaG005086	MsaG025742	0.800695	2.137361e-48	2.935659e-46
MsaG005086	MsaG031057	0.809848	2.639845e-50	4.491594e-48
MsaG005086	MsaG036577	0.800307	2.561456e-48	3.487306e-46
MsaG005086	MsaG026444	0.800486	2.356842e-48	3.221750e-46
MsaG005086	MsaG034616	0.814755	2.266492e-51	4.354272e-49
MsaG005086	MsaG037217	0.804838	3.011068e-49	4.547854e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005086	MtrunA17_Chr1g0204111	93.496	246	9	1	1	246	17	255	5.14e-169	466
MsaG005086	MtrunA17_Chr6g0474371	68.023	172	54	1	1	171	1	172	2.17e-75	227
MsaG005086	MtrunA17_Chr8g0351051	43.511	262	118	7	1	244	1	250	1.63e-60	191
MsaG005086	MtrunA17_Chr6g0455511	48.588	177	88	2	1	176	1	175	3.18e-50	164
MsaG005086	MtrunA17_Chr7g0220111	47.486	179	91	2	1	178	1	177	8.50e-49	160
MsaG005086	MtrunA17_Chr3g0122251	47.429	175	81	3	1	168	1	171	3.67e-47	156
MsaG005086	MtrunA17_Chr5g0420091	46.111	180	95	2	1	179	1	179	2.11e-46	154
MsaG005086	MtrunA17_Chr4g0061691	49.412	170	82	3	1	168	1	168	1.17e-43	147
MsaG005086	MtrunA17_Chr4g0061671	42.857	182	100	2	1	181	1	179	6.45e-41	139
MsaG005086	MtrunA17_Chr8g0366231	46.471	170	87	3	1	168	1	168	2.22e-39	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005086	AT2G45650.1	42.857	231	117	4	1	218	1	229	5.98e-54	174
MsaG005086	AT3G61120.1	51.412	177	81	3	1	175	1	174	5.77e-53	172
MsaG005086	AT1G24260.1	47.977	173	82	3	1	168	1	170	6.60e-46	154
MsaG005086	AT3G02310.2	44.199	181	99	2	1	180	1	180	2.16e-45	151
MsaG005086	AT3G02310.1	44.886	176	95	2	1	175	1	175	1.22e-44	150
MsaG005086	AT1G24260.2	47.368	171	87	2	1	168	1	171	2.17e-44	150
MsaG005086	AT5G15800.1	44.886	176	95	2	1	175	1	175	3.12e-44	149
MsaG005086	AT5G15800.2	44.886	176	95	2	1	175	1	175	5.98e-44	149
MsaG005086	AT1G24260.3	44.134	179	97	2	1	176	1	179	1.74e-43	147
MsaG005086	AT2G03710.2	33.721	258	155	5	1	244	1	256	4.42e-41	141

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Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAGGCAACAGATACA+AGG	0.575273	1:-77481052	MsaT005086.1:CDS
AAGAGTTGATGAATTACGGG+AGG	0.669627	1:-77482581	MsaT005086.1:CDS
AAGCAAAATGGGAAGACGGA+AGG	0.642858	1:-77485046	None:intergenic
AATCTCTTGCCCGGACACAA+AGG	0.605019	1:-77482892	MsaT005086.1:intron
ACAGATACAAGGACTGACAT+AGG	0.591773	1:-77481041	MsaT005086.1:CDS
ACATAACACAGAAAGTTCAA+AGG	0.619770	1:+77484945	None:intergenic
AGCAGTCGCAACAAGAACTT+TGG	0.485960	1:-77481014	MsaT005086.1:CDS
AGTATCAATACCTTTGTGTC+CGG	0.447909	1:+77482882	None:intergenic
AGTTGATGAATTACGGGAGG+AGG	0.524024	1:-77482578	MsaT005086.1:intron
ATATTGGCAGGTGCACAAGG+TGG	0.700029	1:-77482389	MsaT005086.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	77480998	77485061	77480998	ID=MsaG005086
Chr1	mRNA	77480998	77485061	77480998	ID=MsaT005086.1;Parent=MsaG005086
Chr1	exon	77480998	77481103	77480998	ID=MsaT005086.1.exon8;Parent=MsaT005086.1
Chr1	CDS	77480998	77481103	77480998	ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1	exon	77481307	77481428	77481307	ID=MsaT005086.1.exon7;Parent=MsaT005086.1
Chr1	CDS	77481307	77481428	77481307	ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1	exon	77482360	77482401	77482360	ID=MsaT005086.1.exon6;Parent=MsaT005086.1
Chr1	CDS	77482360	77482401	77482360	ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1	exon	77482579	77482620	77482579	ID=MsaT005086.1.exon5;Parent=MsaT005086.1
Chr1	CDS	77482579	77482620	77482579	ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1	exon	77482704	77482803	77482704	ID=MsaT005086.1.exon4;Parent=MsaT005086.1
Chr1	CDS	77482704	77482803	77482704	ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1	exon	77482893	77482954	77482893	ID=MsaT005086.1.exon3;Parent=MsaT005086.1
Chr1	CDS	77482893	77482954	77482893	ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1	exon	77483109	77483193	77483109	ID=MsaT005086.1.exon2;Parent=MsaT005086.1
Chr1	CDS	77483109	77483193	77483109	ID=cds.MsaT005086.1;Parent=MsaT005086.1
Chr1	exon	77484880	77485061	77484880	ID=MsaT005086.1.exon1;Parent=MsaT005086.1
Chr1	CDS	77484880	77485061	77484880	ID=cds.MsaT005086.1;Parent=MsaT005086.1

Gene Sequence

>MsaT005086.1

ATGGGAAGACGGAAGGTGGTAATGGAGAGAATACATAACAAGATCAATAGACAAGTAACATTTTCAAAGAGAAGAAGTGGTTTGTTGAAGAAAGCCTTTGAACTTTCTGTGTTATGTGATGCTGAGGTTGCTCTTATCATTTTCTCCGGTCTTGGCAAGCTTTTTCAATACAGTACCACAGACTTGAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTGAGAATGGTGACTTAGGAGAACATGAGTCACAGGGCTTATACCAGGAGCTTTTGATGCTCAGAGTCAAGCATGAATCTCTTGCCCGGACACAAAGGAATTTTTTGGGGGAAGAAATCAATGCACTTAGCATAAAAGATTTGCAAAGTTTAGAGAAACAATTGGAGAGAACGCTTGCTCAAGCTCGAAAACACCAAATGCAAAAGCTGATGGAAAGAGTTGATGAATTACGGGAGGAGGTGCACAAGGTGGAGGAGGTCAACAAACAATTAGAATCCAAGGATAGAGATATAAACACCAAGATTTGTGACAATTCTACGGATTCCACCGTCTCGAGTAACAACAATATCATTACCAATTTGCTTGATGCACAAGCCAATCCGTTTGAACATGTGACAACAGGGCGGTTTCTGCACCTACAAGATGCTTCAAAAAGACAGGCAACAGATACAAGGACTGACATAGGACAAAGCAGTCGCAACAAGAACTTTGGATGGATGAATATTTGA

Protein sequence

>MsaT005086.1

MGRRKVVMERIHNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSGLGKLFQYSTTDLNKIIEKYRQCCFNNMSENGDLGEHESQGLYQELLMLRVKHESLARTQRNFLGEEINALSIKDLQSLEKQLERTLAQARKHQMQKLMERVDELREEVHKVEEVNKQLESKDRDINTKICDNSTDSTVSSNNNIITNLLDAQANPFEHVTTGRFLHLQDASKRQATDTRTDIGQSSRNKNFGWMNI*