AlfalfaGEDB | MsaG005099

M. sativa ssp. caerulea / MsaG005099

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005099	XP_039685874.1	93.699	492	22	4	1	489	94	579	0.0	885

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005099	sp\|Q9STJ8\|Y4539_ARATH	44.365	559	201	17	1	487	129	649	7.86e-109	340

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005099	tr\|A0A396JUA6\|A0A396JUA6_MEDTR	93.699	492	22	4	1	489	94	579	0.0	885

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005099	MtrunA17_Chr1g0204331	93.699	492	22	4	1	489	94	579	0.0	885
MsaG005099	MtrunA17_Chr6g0474661	50.000	560	175	17	12	487	145	683	3.54e-141	421
MsaG005099	MtrunA17_Chr8g0351221	51.613	341	120	11	172	487	363	683	2.18e-85	276
MsaG005099	MtrunA17_Chr8g0351221	54.098	122	53	2	12	132	120	239	6.28e-36	141
MsaG005099	MtrunA17_Chr2g0333961	37.500	336	153	11	181	478	392	708	5.53e-36	142
MsaG005099	MtrunA17_Chr2g0333961	44.800	125	63	4	6	129	109	228	2.87e-24	106
MsaG005099	MtrunA17_Chr2g0318191	44.167	120	61	4	11	128	49	164	6.59e-23	96.3
MsaG005099	MtrunA17_Chr4g0071371	47.899	119	58	3	12	130	173	287	8.77e-23	100
MsaG005099	MtrunA17_Chr5g0428581	43.089	123	67	2	6	128	75	194	2.33e-22	98.6
MsaG005099	MtrunA17_Chr5g0428581	33.108	148	81	4	336	479	202	335	4.21e-12	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005099	AT4G25390.1	44.365	559	201	17	1	487	129	649	7.99e-110	340
MsaG005099	AT2G45590.1	43.608	571	207	21	12	487	131	681	1.12e-108	338
MsaG005099	AT4G25390.2	43.038	316	108	9	1	253	129	435	2.41e-51	182
MsaG005099	AT5G51770.1	60.465	129	43	3	1	129	123	243	1.26e-38	149
MsaG005099	AT1G80870.1	33.234	337	165	11	181	478	363	678	2.13e-31	128
MsaG005099	AT1G80870.1	45.378	119	60	4	12	129	117	231	4.30e-23	103
MsaG005099	AT1G49270.1	40.206	194	97	8	5	187	365	550	3.92e-25	109
MsaG005099	AT1G24030.4	46.218	119	60	3	13	130	102	217	9.32e-23	98.6
MsaG005099	AT1G24030.5	45.455	121	62	3	11	130	100	217	9.84e-23	97.8
MsaG005099	AT1G24030.3	46.218	119	60	3	13	130	48	163	1.72e-22	98.2

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Find 117 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAACAATTCAACTGA+TGG	0.511874	1:+77668696	None:intergenic
AAAATAGTTCCTCTCATACT+TGG	0.443113	1:+77668942	None:intergenic
AAAGAAGAGTTTGAGAGTGA+TGG	0.502675	1:-77669536	MsaT005099.1:CDS
AAAGCCCTGAATTAACGATA+TGG	0.377714	1:-77669757	MsaT005099.1:CDS
AACAAAGAATGATGATTTGG+TGG	0.543816	1:-77669369	MsaT005099.1:CDS
AACCGTAATAGGAAGGAACG+TGG	0.725048	1:-77669071	MsaT005099.1:CDS
AACGTGGTAGTGGTGATTCA+TGG	0.475890	1:-77669055	MsaT005099.1:CDS
AAGAACAAAGAATGATGATT+TGG	0.356839	1:-77669372	MsaT005099.1:CDS
AAGAATGATGATTTGGTGGG+TGG	0.629965	1:-77669365	MsaT005099.1:CDS
AAGGTGTTCGGATTGCAGCC+TGG	0.538810	1:+77669883	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	77668509	77669978	77668509	ID=MsaG005099
Chr1	mRNA	77668509	77669978	77668509	ID=MsaT005099.1;Parent=MsaG005099
Chr1	exon	77668509	77669978	77668509	ID=MsaT005099.1.exon1;Parent=MsaT005099.1
Chr1	CDS	77668509	77669978	77668509	ID=cds.MsaT005099.1;Parent=MsaT005099.1

Gene Sequence

>MsaT005099.1

ATGAACTCCGCCTCCCTCGGCGCCGTCGGAGGCCAAGGAGAACGCGAGTATCACAACGAACTCTTCTTCGCTTCCAGGCTGCAATCCGAACACCTTGTTCCCGCTATCGGCTTCTCCTCTGATCCTAAACGCCGTCGTTTTGTTCTTGTCTATGATCTCATGAAAAACGGTAACCTCCATGACGCGCTTTTCCGTCGTAAAAGCCCTGAATTAACGATATGGAAAACGCGTTTTTCGATAATTGTTAATATAGCAAAAGGAATTCAGTATCTTCATTCATGTGATCCTGCAATAATAATAATTCATGGTGATATTAAACCTAGTAATATTCTGCTCGATCATTCGTTTTCTGCTAAAATTGCCGATTTCGGACTTGCTAGGTTAAAACCCTTTCAATTCGAAAACAGTGACTATAGAAGAAAAGAAGAGTTTGAGAGTGATGGTGCTGAAACAGAGAGTGTTAATACTAGCTTTGAGGAATATGAGAGGGAGATGGTTGGTGTTGTTGGTGGTGGTGGATTGAAGAAGAGTGGGAGTGTGAAGGATTATGTGATGGATTGGATTGGAAAAGAGGTGAAGGAAGAAAGAACAAAGAATGATGATTTGGTGGGTGGAAGTGGAAAGGGAGAGAAAAGTAAGATGAAGAAGAAATTGGAGTGGTGGGAATCAATGGATGAAGGAAAAAGAAAGGGTGATTTGAAAAAAGAGAAGAGAAGACCAGTAAGAGAATGGTGGAAGGAGGAGTATTCTCAAGAGCTTGAAAACAAGAACAAGAACAAGAATAAGAAAAAGGGTGGAAAACATGGTGATAATTGGTGGAAATGGGAGAGAGATCATGTTCATGATCATGATGATGGTAGTGATGTGAAGAAAATGAGTTATAAAAACCGTAATAGGAAGGAACGTGGTAGTGGTGATTCATGGTTAAGTGGGGAATTAAGGAGAGTGAGTTGGAATAGTTATGATTCATGTAATAGTGGAGAAATTCACAAGAGTGGTGAGATTAGTAGTACTCCAAGTATGAGAGGAACTATTTTTTATGTTGCTCCTGAAAATGGTTATAGTGATGTAACAGAGAAGTCTGATGTTTATAGTTTTGGTGTGTTATTGCTTGTTATTGTTTCTGGGAGAAGACCTCTTCAGGTGAATGCTGGTGGTGGTGGTGATGGATTCAAGCATATGTCAGAGTTTAAGCGAGCGAATTTGGTTTCTTGGGCTAGACATTGTGCGCGTAATGGGAAACTGCTCGAACTTGTTGATCCATCAGTTGAATTGTTGGTTTTGGATGATAAAGAGCAGGCTCTTTTATGCATCAAAATTGCATTACTTTGTTTGCTTAAGTCGCCTAATCGGAGACCTTCAATGAAAGAGATTGTGGGAATGCTTAGCGGGGAATTGGAGCCACCTCAATTGCCACCTGAGTACTCACAATCTCGATTCCAATTCAAGAATCGAAAAGAATGTTCATGA

Protein sequence

>MsaT005099.1

MNSASLGAVGGQGEREYHNELFFASRLQSEHLVPAIGFSSDPKRRRFVLVYDLMKNGNLHDALFRRKSPELTIWKTRFSIIVNIAKGIQYLHSCDPAIIIIHGDIKPSNILLDHSFSAKIADFGLARLKPFQFENSDYRRKEEFESDGAETESVNTSFEEYEREMVGVVGGGGLKKSGSVKDYVMDWIGKEVKEERTKNDDLVGGSGKGEKSKMKKKLEWWESMDEGKRKGDLKKEKRRPVREWWKEEYSQELENKNKNKNKKKGGKHGDNWWKWERDHVHDHDDGSDVKKMSYKNRNRKERGSGDSWLSGELRRVSWNSYDSCNSGEIHKSGEISSTPSMRGTIFYVAPENGYSDVTEKSDVYSFGVLLLVIVSGRRPLQVNAGGGGDGFKHMSEFKRANLVSWARHCARNGKLLELVDPSVELLVLDDKEQALLCIKIALLCLLKSPNRRPSMKEIVGMLSGELEPPQLPPEYSQSRFQFKNRKECS*