AlfalfaGEDB | MsaG005116

M. sativa ssp. caerulea / MsaG005116

KEGG: K20718
GO: GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005116	XP_013469721.1	40.708	113	67	0	63	175	354	466	2.85e-12	82.4
MsaG005116	XP_013469721.1	44.231	156	78	4	24	178	224	371	6.41e-22	112
MsaG005116	XP_013469721.1	44.872	312	102	9	1	255	46	344	6.09e-55	211
MsaG005116	XP_013469721.1	56.075	107	47	0	64	170	331	437	4.63e-23	116
MsaG005116	XP_013469721.1	76.163	516	78	3	63	535	450	963	0.0	773

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005116	sp\|C0LGW6\|ERL1_ARATH	55.396	556	150	6	60	524	385	933	0.0	583
MsaG005116	sp\|C0LGW6\|ERL1_ARATH	42.149	242	85	5	1	188	34	274	1.86e-43	169
MsaG005116	sp\|C0LGW6\|ERL1_ARATH	53.271	107	50	0	64	170	317	423	1.82e-24	111
MsaG005116	sp\|C0LGW6\|ERL1_ARATH	47.328	131	46	3	63	170	221	351	2.18e-24	111
MsaG005116	sp\|C0LGW6\|ERL1_ARATH	41.441	111	65	0	61	171	362	472	3.25e-15	82.8
MsaG005116	sp\|C0LGW6\|ERL1_ARATH	30.469	128	88	1	64	191	198	324	1.97e-11	70.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005116	tr\|A0A072VP04\|A0A072VP04_MEDTR	40.708	113	67	0	63	175	354	466	1.36e-12	82.4
MsaG005116	tr\|A0A072VP04\|A0A072VP04_MEDTR	44.231	156	78	4	24	178	224	371	3.06e-22	112
MsaG005116	tr\|A0A072VP04\|A0A072VP04_MEDTR	44.872	312	102	9	1	255	46	344	2.91e-55	211
MsaG005116	tr\|A0A072VP04\|A0A072VP04_MEDTR	56.075	107	47	0	64	170	331	437	2.21e-23	116
MsaG005116	tr\|A0A072VP04\|A0A072VP04_MEDTR	76.163	516	78	3	63	535	450	963	0.0	773

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000011	MsaG005116	0.800376	2.481310e-48	3.383426e-46
MsaG000083	MsaG005116	0.831299	3.257522e-55	9.785080e-53
MsaG000113	MsaG005116	0.815355	1.670405e-51	3.258161e-49
MsaG000117	MsaG005116	0.817128	6.732124e-52	1.373983e-49
MsaG000140	MsaG005116	0.828864	1.270523e-54	3.559633e-52
MsaG000153	MsaG005116	0.821804	5.846610e-53	1.348746e-50
MsaG000224	MsaG005116	0.806084	1.654094e-49	2.572056e-47
MsaG000237	MsaG005116	0.859250	9.228273e-63	6.973939e-60
MsaG000274	MsaG005116	0.803139	6.764344e-49	9.822312e-47
MsaG000292	MsaG005116	0.842818	3.817368e-58	1.629540e-55

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005116	MtrunA17_Chr1g0151041	51.215	494	189	5	63	507	404	894	1.55e-165	494
MsaG005116	MtrunA17_Chr1g0151041	31.935	310	143	8	1	255	2	298	4.45e-30	125
MsaG005116	MtrunA17_Chr1g0151041	49.533	107	54	0	64	170	285	391	3.15e-21	98.2
MsaG005116	MtrunA17_Chr1g0151041	41.216	148	80	3	24	170	178	319	1.05e-20	96.3
MsaG005116	MtrunA17_Chr1g0204461	95.261	211	7	2	326	535	767	975	4.27e-132	409
MsaG005116	MtrunA17_Chr1g0204461	73.384	263	70	0	63	325	426	688	2.03e-123	386
MsaG005116	MtrunA17_Chr1g0204461	44.872	312	102	9	1	255	46	344	1.33e-58	210
MsaG005116	MtrunA17_Chr1g0204461	56.075	107	47	0	64	170	331	437	3.68e-27	116
MsaG005116	MtrunA17_Chr1g0204461	45.270	148	74	3	24	170	224	365	8.12e-26	112
MsaG005116	MtrunA17_Chr2g0284101	32.692	572	279	12	1	506	44	575	5.50e-79	259

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005116	AT5G62230.2	55.696	553	147	6	63	524	340	885	0.0	583
MsaG005116	AT5G62230.2	42.149	242	85	5	1	188	34	274	1.71e-44	169
MsaG005116	AT5G62230.2	47.328	131	46	3	63	170	221	351	2.06e-25	111
MsaG005116	AT5G62230.2	47.664	107	56	0	64	170	269	375	5.52e-19	91.3
MsaG005116	AT5G62230.2	46.296	108	58	0	64	171	317	424	1.26e-18	90.1
MsaG005116	AT5G62230.2	44.444	108	60	0	63	170	292	399	7.42e-17	84.7
MsaG005116	AT5G62230.2	30.469	128	88	1	64	191	198	324	1.68e-12	70.9
MsaG005116	AT5G62230.1	55.396	556	150	6	60	524	385	933	0.0	583
MsaG005116	AT5G62230.1	42.149	242	85	5	1	188	34	274	1.89e-44	169
MsaG005116	AT5G62230.1	53.271	107	50	0	64	170	317	423	1.85e-25	111

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Find 111 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAGATTTCCTAGTAT+AGG	0.532849	1:-77903070	None:intergenic
AAATCAGATGTCTATAGCTT+TGG	0.429569	1:+77905909	MsaT005116.1:CDS
AACGTCAGCTATGTTGTTGA+AGG	0.525568	1:-77900956	None:intergenic
AAGCAATTGATGAAAGGATC+TGG	0.474238	1:+77905013	MsaT005116.1:CDS
AAGTAGTGAAATAAGCACCC+TGG	0.696701	1:-77906296	None:intergenic
AATGGAGGCTGTGGATTCAG+AGG	0.575892	1:+77906168	MsaT005116.1:CDS
ACAACTTTACTTGGAGGTGG+AGG	0.575703	1:-77906319	None:intergenic
ACAAGTAAGTCAGACTCTCA+AGG	0.637612	1:-77903700	None:intergenic
ACACGGATGAGGATTGCTGT+TGG	0.582331	1:+77905660	MsaT005116.1:CDS
ACATACCAATTTATGCAAGT+TGG	0.486589	1:-77905982	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	77900940	77906408	77900940	ID=MsaG005116
Chr1	mRNA	77900940	77906408	77900940	ID=MsaT005116.1;Parent=MsaG005116
Chr1	exon	77900940	77901074	77900940	ID=MsaT005116.1.exon1;Parent=MsaT005116.1
Chr1	CDS	77900940	77901074	77900940	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77901441	77901562	77901441	ID=MsaT005116.1.exon2;Parent=MsaT005116.1
Chr1	CDS	77901441	77901562	77901441	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77901826	77901897	77901826	ID=MsaT005116.1.exon3;Parent=MsaT005116.1
Chr1	CDS	77901826	77901897	77901826	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77903033	77903104	77903033	ID=MsaT005116.1.exon4;Parent=MsaT005116.1
Chr1	CDS	77903033	77903104	77903033	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77903649	77903720	77903649	ID=MsaT005116.1.exon5;Parent=MsaT005116.1
Chr1	CDS	77903649	77903720	77903649	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77904612	77904683	77904612	ID=MsaT005116.1.exon6;Parent=MsaT005116.1
Chr1	CDS	77904612	77904683	77904612	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77904759	77904832	77904759	ID=MsaT005116.1.exon7;Parent=MsaT005116.1
Chr1	CDS	77904759	77904832	77904759	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77904918	77905049	77904918	ID=MsaT005116.1.exon8;Parent=MsaT005116.1
Chr1	CDS	77904918	77905049	77904918	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77905137	77905360	77905137	ID=MsaT005116.1.exon9;Parent=MsaT005116.1
Chr1	CDS	77905137	77905360	77905137	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77905642	77906004	77905642	ID=MsaT005116.1.exon10;Parent=MsaT005116.1
Chr1	CDS	77905642	77906004	77905642	ID=cds.MsaT005116.1;Parent=MsaT005116.1
Chr1	exon	77906139	77906408	77906139	ID=MsaT005116.1.exon11;Parent=MsaT005116.1
Chr1	CDS	77906139	77906408	77906139	ID=cds.MsaT005116.1;Parent=MsaT005116.1

Gene Sequence

>MsaT005116.1

ATGGCAATGAAGTCTTCCTTCAACAACATAGCTGACGTTCTCCTTGACTGGGATGATGTACACAATGATGACTTTTGCTCATGGCGTGGAGTTTTCTGTGATAATGCCAGTCATGCTCTTACTGTTGTATCTCCTTTGTATGTTAACAATGTATGTTTTTTTTTTTTTTTTTGTGGTAATGACAGAGATTTGCAAGGGAATAAACTAACTGGTCAAATCCCAGATGAAATTGGGAACTGTGGTGCACTTTATCATCTGAACTTGAAGAACAATCAGTTGACTGGTCCTATTCCTTCCACGTTATCCCAAATTCCAAACCTTAAGACTCTGGATTTGAGTGAGAATCAGTTAGTGGGACCAATTCCTCCTATACTAGGAAATCTGTCTTTCACCGGCAAGCTTAATGTGCATGGTAATCAGTTAAGCGGTTCTATTCCAACGACTTTTCGCAACCTTGAGAGTCTGACTTACTTGAACTTTTCTTATAACAACTTTTCTGGAGTAGTTCCGTCTTCGAAGAACTTCACGCGTTTCGCAGCTGACAGCTTCATTGGAAATCCTTTATTATGTGGAAATTGGGTAGAATCAATTTGTCGTCCTTATATTCCTAAATCAAAAGAGATATTTTCTAAAGTTGCAGTTATATGTCTCACTCTTGGTATCATCATATTATTGGCTATGGTAATTGTCGCAATCTATAGATCCATCCAATCAAAGCAATTGATGAAAGGATCTGGCAAGACGGGGCAAGTGCCTCCTAAACTTGTCATTCTTGATATGGATTTGGCAATACACACTTTAGATGATATAATGAGAAGCGCTGAGAATCTCAGTGAGAAGTTTATCATAGGGTATGGTGTCGCTAGTACTGTATACAAGTGTGTGTTGAAAAATTCCCGACCCATTATAGTCATGCGATTGTACAATCAGCATCCTCACAATTTAAGAGAATTTGAAACGGAGCTTGAAACAATTGTAAAACTTGATTGGGAAACACGGATGAGGATTGCTGTTGGAGCTGCTGAAGGACCTGCTTATCTTCACCATGACTGCAACCCCCGAATTGTTCACAGGGACATCAAGTCTTCAAATATTTTGCTTGATGAGAACTTTGAGGCTCACCTCTCTGATTTTGGCACTGCAAAAAGCATCCCAGCCACAAAAACTCATGCCTCAACTTATGTTCTTGGAACTATAGGCTACATCGATCCTCAATATGCACGGACGTCTAGGCTGAATGAAAAATCAGATGTCTATAGCTTTGGCGTTGTTTTGCTAGAGCTACTTACTGGGAAGAAGGCAGTGGACAACGATTCCAACTTGCATAAATTGGTATGTATATTGTCCAAGGCGGATAGTAACACTATAATGGAGGCTGTGGATTCAGAGGTATCCATTACCTGTATTGATTTGGCTCATGTCAAGAAGACCTTTCAACTTGCTCTGCTTTGCACAAGAAGGAATCCTTCTGAGAGGCCTAGCATGCATGAAGTAGCCAGGGTGCTTATTTCACTACTTCCTCCACCTCCAAGTAAAGTTGTTGCAGCTGCTGCCAAGAGTTTTGATTATGCACCTTTTGTTGCCGAGAAGGGACATCACAGAAAATAG

Protein sequence

>MsaT005116.1

MAMKSSFNNIADVLLDWDDVHNDDFCSWRGVFCDNASHALTVVSPLYVNNVCFFFFFCGNDRDLQGNKLTGQIPDEIGNCGALYHLNLKNNQLTGPIPSTLSQIPNLKTLDLSENQLVGPIPPILGNLSFTGKLNVHGNQLSGSIPTTFRNLESLTYLNFSYNNFSGVVPSSKNFTRFAADSFIGNPLLCGNWVESICRPYIPKSKEIFSKVAVICLTLGIIILLAMVIVAIYRSIQSKQLMKGSGKTGQVPPKLVILDMDLAIHTLDDIMRSAENLSEKFIIGYGVASTVYKCVLKNSRPIIVMRLYNQHPHNLREFETELETIVKLDWETRMRIAVGAAEGPAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKSIPATKTHASTYVLGTIGYIDPQYARTSRLNEKSDVYSFGVVLLELLTGKKAVDNDSNLHKLVCILSKADSNTIMEAVDSEVSITCIDLAHVKKTFQLALLCTRRNPSERPSMHEVARVLISLLPPPPSKVVAAAAKSFDYAPFVAEKGHHRK*