AlfalfaGEDB | MsaG005140

M. sativa ssp. caerulea / MsaG005140

KEGG: -
GO: GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007275 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005140	AKN91693.1	99.697	330	1	0	1	330	1	330	0.0	680

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005140	sp\|Q8GY55\|TIF4B_ARATH	43.322	307	124	6	1	285	1	279	1.49e-66	214

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005140	tr\|A0A186XM88\|A0A186XM88_MEDSA	99.697	330	1	0	1	330	1	330	0.0	680

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005140	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000113	MsaG005140	0.820567	1.123937e-52	2.509227e-50
MsaG000403	MsaG005140	0.871776	1.080105e-66	1.349774e-63
MsaG000496	MsaG005140	0.831654	2.665280e-55	8.090724e-53
MsaG000620	MsaG005140	0.890643	1.804827e-73	5.501757e-70
MsaG000791	MsaG005140	0.824209	1.617719e-53	3.982353e-51
MsaG000932	MsaG005140	0.843916	1.949902e-58	8.622452e-56
MsaG001031	MsaG005140	0.800072	2.858269e-48	3.870893e-46
MsaG001148	MsaG005140	0.811503	1.162352e-50	2.059243e-48
MsaG001306	MsaG005140	0.807761	7.339366e-50	1.187542e-47
MsaG001323	MsaG005140	0.858368	1.689194e-62	1.234842e-59

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005140	MtrunA17_Chr1g0204781	96.061	330	11	1	1	330	1	328	0.0	651

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005140	AT4G14720.1	43.322	307	124	6	1	285	1	279	1.51e-67	214
MsaG005140	AT4G14720.2	43.322	307	124	6	1	285	1	279	2.49e-67	214
MsaG005140	AT4G14713.1	42.761	297	122	5	10	285	9	278	2.10e-65	209
MsaG005140	AT4G14713.2	43.284	268	104	5	10	256	9	249	3.41e-57	186
MsaG005140	AT4G14713.3	39.516	248	102	5	10	236	9	229	1.09e-43	151
MsaG005140	AT4G14713.5	44.554	202	78	5	10	190	9	197	7.38e-41	142
MsaG005140	AT4G14713.4	44.554	202	78	5	10	190	9	197	7.38e-41	142

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Find 101 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCTTCGGCGGAGGTTG+AGG	0.462001	1:+78110198	None:intergenic
AAATGGAGAACAGACCCGGG+AGG	0.721352	1:+78110084	None:intergenic
AAATGTCATCTTCAGTGAGT+TGG	0.516724	1:+78110698	None:intergenic
AAGAGGACTTCTTTATCAAT+AGG	0.361087	1:+78108542	None:intergenic
AAGGTCCAAAGCAGTATCTT+CGG	0.420329	1:+78110170	None:intergenic
AATGGAGAACAGACCCGGGA+GGG	0.635558	1:+78110085	None:intergenic
ACACCAACGCCGACGGTAGC+CGG	0.528495	1:+78110258	None:intergenic
ACACCGGCTACCGTCGGCGT+TGG	0.567567	1:-78110261	MsaT005140.1:CDS
ACAGAGGGTGCACACCTAGT+GGG	0.649773	1:-78108826	MsaT005140.1:intron
ACATCTTTACCCACCTTATC+CGG	0.403564	1:+78108743	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	78104929	78110773	78104929	ID=MsaG005140
Chr1	mRNA	78104929	78110773	78104929	ID=MsaT005140.1;Parent=MsaG005140
Chr1	exon	78104929	78104945	78104929	ID=MsaT005140.1.exon8;Parent=MsaT005140.1
Chr1	CDS	78104929	78104945	78104929	ID=cds.MsaT005140.1;Parent=MsaT005140.1
Chr1	exon	78105829	78106037	78105829	ID=MsaT005140.1.exon7;Parent=MsaT005140.1
Chr1	CDS	78105829	78106037	78105829	ID=cds.MsaT005140.1;Parent=MsaT005140.1
Chr1	exon	78106154	78106217	78106154	ID=MsaT005140.1.exon6;Parent=MsaT005140.1
Chr1	CDS	78106154	78106217	78106154	ID=cds.MsaT005140.1;Parent=MsaT005140.1
Chr1	exon	78107238	78107297	78107238	ID=MsaT005140.1.exon5;Parent=MsaT005140.1
Chr1	CDS	78107238	78107297	78107238	ID=cds.MsaT005140.1;Parent=MsaT005140.1
Chr1	exon	78108504	78108666	78108504	ID=MsaT005140.1.exon4;Parent=MsaT005140.1
Chr1	CDS	78108504	78108666	78108504	ID=cds.MsaT005140.1;Parent=MsaT005140.1
Chr1	exon	78108757	78108844	78108757	ID=MsaT005140.1.exon3;Parent=MsaT005140.1
Chr1	CDS	78108757	78108844	78108757	ID=cds.MsaT005140.1;Parent=MsaT005140.1
Chr1	exon	78110099	78110369	78110099	ID=MsaT005140.1.exon2;Parent=MsaT005140.1
Chr1	CDS	78110099	78110369	78110099	ID=cds.MsaT005140.1;Parent=MsaT005140.1
Chr1	exon	78110653	78110773	78110653	ID=MsaT005140.1.exon1;Parent=MsaT005140.1
Chr1	CDS	78110653	78110773	78110653	ID=cds.MsaT005140.1;Parent=MsaT005140.1

Gene Sequence

>MsaT005140.1

ATGAACGGCGGAAGCACCGTTTCCTTCCGATCCATCCTCGACAGACCTCTTAACCAACTCACTGAAGATGACATTTCTCAACTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGATAAAGGGATGCGCAGGCCTTCCTGGAACAAATCACAGGCGATCCAGCAGGTGATTTCTCTCAAAGCGCTTCTAGAACCTACTGACGATGATACACCGGCTACCGTCGGCGTTGGTGTCTCCTCCGCCATTCACCGCCATCACCACCACCACTCTCCTCAACCTCCGCCGAAGGCTTTGGATCCCGAAGATACTGCTTTGGACCTTCAGAAATCTACTTCACCTGTTTCTGAAAGACCCACGGAAACCAATGATGCCAACGTTGTTAACCCTCCCGGAGGGTGCACACCTAGTGGGTCATTTGGGCAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTATGATGGAGTTTCGCCGGATAAGGCACGATCAATCATGCAGCTTGCTGCTGCATGTCCGTCCTCCTTTCCCCAGGATAATCCTTCAAATAAAAATGCAGCAGTTTGGGCTTCTCCTTGCAACTTACCTATTGATAAAGAAGTCCTCTTCCCTACTGACACAACAATCCTTCAAGTCGCTCAAACAGATAAAATGGTGGAATACCCTCTGCATTACAGGGAGAAAGGAAGCACAACTCGTGATGCTGATGTAGAGGGTCAGGCAAGCAGAAAAGTGTCGCTGCAGCGATATCTTGAAAAGCGAAAGGACAGGGGAAGATCGAAGGGCAAGAAACTGACTGGCATAACTTCATCTAACTTTGAGATGTATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGGAATTCAAGTCGTAGTAGCACTGACTCTCCACCACAGCCTAGACTGCCTCTAGTTTCCAGTGGCTCAGCTGAAAACCTGCCAAAAGTTACCCTTCCCATTGATTTGAATGATAAAGATGTTCAAGAATGCTAA

Protein sequence

>MsaT005140.1

MNGGSTVSFRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQVISLKALLEPTDDDTPATVGVGVSSAIHRHHHHHSPQPPPKALDPEDTALDLQKSTSPVSERPTETNDANVVNPPGGCTPSGSFGQMTIFYCGKVNVYDGVSPDKARSIMQLAAACPSSFPQDNPSNKNAAVWASPCNLPIDKEVLFPTDTTILQVAQTDKMVEYPLHYREKGSTTRDADVEGQASRKVSLQRYLEKRKDRGRSKGKKLTGITSSNFEMYLNLPVKLHASNGNSSRSSTDSPPQPRLPLVSSGSAENLPKVTLPIDLNDKDVQEC*