AlfalfaGEDB | MsaG005152

M. sativa ssp. caerulea / MsaG005152

KEGG: -
GO: -
PFAM: PF13302.10

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005152	XP_013469780.1	94.737	190	10	0	2	191	1	190	1.11e-125	362

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005152	sp\|P05332\|YP20_BACLI	35.088	171	102	4	24	188	8	175	4.05e-23	94.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005152	tr\|A0A072VQW9\|A0A072VQW9_MEDTR	94.737	190	10	0	2	191	1	190	5.29e-126	362

TFs/TRs:

Gene ID	Type	Classification
MsaG005152	TR	GNAT

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG005152	0.800883	1.957701e-48	2.700160e-46
MsaG000023	MsaG005152	0.803657	5.289370e-49	7.773094e-47
MsaG000286	MsaG005152	0.816988	7.235270e-52	1.471343e-49
MsaG000377	MsaG005152	0.839886	2.237204e-57	8.702639e-55
MsaG000545	MsaG005152	0.833182	1.119762e-55	3.553945e-53
MsaG000621	MsaG005152	0.809936	2.527196e-50	4.309007e-48
MsaG000755	MsaG005152	0.840685	1.386639e-57	5.530804e-55
MsaG000801	MsaG005152	0.836657	1.506232e-56	5.302494e-54
MsaG000944	MsaG005152	0.840759	1.326600e-57	5.303394e-55
MsaG001261	MsaG005152	0.817238	6.361585e-52	1.302052e-49
MsaG002213	MsaG005152	0.812625	6.636095e-51	1.208649e-48
MsaG002636	MsaG005152	0.812756	6.215885e-51	1.135822e-48
MsaG002975	MsaG005152	0.801643	1.370617e-48	1.923271e-46
MsaG003089	MsaG005152	0.806703	1.226751e-49	1.935689e-47
MsaG003113	MsaG005152	0.814435	2.664955e-51	5.078940e-49
MsaG003184	MsaG005152	0.821505	6.849178e-53	1.567586e-50
MsaG003460	MsaG005152	0.814989	2.011579e-51	3.887563e-49
MsaG003435	MsaG005152	0.848938	8.449164e-60	4.416444e-57
MsaG003616	MsaG005152	0.812663	6.511468e-51	1.187063e-48
MsaG003930	MsaG005152	0.811894	9.563985e-51	1.710736e-48
MsaG003939	MsaG005152	0.820358	1.254383e-52	2.785141e-50
MsaG003976	MsaG005152	0.814835	2.175621e-51	4.188209e-49
MsaG004086	MsaG005152	0.811021	1.477219e-50	2.586305e-48
MsaG004191	MsaG005152	0.814727	2.298962e-51	4.413382e-49
MsaG004193	MsaG005152	0.823905	1.904416e-53	4.649700e-51
MsaG004445	MsaG005152	0.822583	3.863736e-53	9.101830e-51
MsaG004495	MsaG005152	0.837361	9.975375e-57	3.587521e-54
MsaG004584	MsaG005152	0.826043	5.989811e-54	1.550946e-51
MsaG005054	MsaG005152	0.830225	5.952803e-55	1.733913e-52
MsaG005139	MsaG005152	0.805226	2.499018e-49	3.808655e-47
MsaG005152	MsaG005338	0.818035	4.213587e-52	8.802822e-50
MsaG005152	MsaG005345	0.842132	5.793898e-58	2.419406e-55
MsaG005152	MsaG005636	0.819003	2.548762e-52	5.460352e-50
MsaG005152	MsaG005831	0.810563	1.853585e-50	3.209174e-48
MsaG005152	MsaG005768	0.836144	2.030774e-56	7.039969e-54
MsaG005152	MsaG006027	0.819630	1.836941e-52	4.000486e-50
MsaG005152	MsaG005940	0.810304	2.107883e-50	3.626399e-48
MsaG005152	MsaG006293	0.803556	5.547677e-49	8.133869e-47
MsaG005152	MsaG006476	0.802007	1.154822e-48	1.633883e-46
MsaG005152	MsaG006526	0.801451	1.500150e-48	2.095878e-46
MsaG005152	MsaG006504	0.816534	9.137051e-52	1.836439e-49
MsaG005152	MsaG006549	0.810053	2.385752e-50	4.079381e-48
MsaG005152	MsaG006686	0.846836	3.187262e-59	1.552208e-56
MsaG005152	MsaG007015	0.811625	1.093792e-50	1.943561e-48
MsaG005152	MsaG007169	0.824343	1.504319e-53	3.717111e-51
MsaG005152	MsaG007212	0.855822	9.442950e-62	6.284433e-59
MsaG005152	MsaG007375	0.814254	2.921401e-51	5.542277e-49
MsaG005152	MsaG007516	0.811336	1.263098e-50	2.228577e-48
MsaG005152	MsaG007623	0.836831	1.360802e-56	4.815877e-54
MsaG005152	MsaG007610	0.858994	1.100168e-62	8.233315e-60
MsaG005152	MsaG007686	0.806976	1.074783e-49	1.706788e-47
MsaG005152	MsaG008189	0.814020	3.288079e-51	6.201353e-49
MsaG005152	MsaG008305	0.815131	1.871578e-51	3.629780e-49
MsaG005152	MsaG008409	0.801728	1.316853e-48	1.851400e-46
MsaG005152	MsaG008410	0.811836	9.846034e-51	1.758669e-48
MsaG005152	MsaG008647	0.822676	3.676375e-53	8.682177e-51
MsaG005152	MsaG008998	0.825002	1.053964e-53	2.651413e-51
MsaG005152	MsaG009000	0.803768	5.017300e-49	7.392317e-47
MsaG005152	MsaG009112	0.841535	8.312381e-58	3.405878e-55
MsaG005152	MsaG009478	0.800045	2.895176e-48	3.918380e-46
MsaG005152	MsaG009891	0.827434	2.798657e-54	7.532606e-52
MsaG005152	MsaG010074	0.809501	3.131063e-50	5.283236e-48
MsaG005152	MsaG010298	0.836079	2.109137e-56	7.297042e-54
MsaG005152	MsaG010302	0.842308	5.204763e-58	2.185818e-55
MsaG005152	MsaG010305	0.843045	3.323994e-58	1.429351e-55
MsaG005152	MsaG010603	0.801043	1.816337e-48	2.514252e-46
MsaG005152	MsaG010620	0.806146	1.605332e-49	2.499888e-47
MsaG005152	MsaG011199	0.826547	4.550422e-54	1.194788e-51
MsaG005152	MsaG011218	0.810258	2.155318e-50	3.703954e-48
MsaG005152	MsaG011230	0.813251	4.845410e-51	8.964151e-49
MsaG005152	MsaG011238	0.812637	6.596692e-51	1.201831e-48
MsaG005152	MsaG011389	0.831810	2.440576e-55	7.442496e-53
MsaG005152	MsaG012430	0.841543	8.272361e-58	3.390322e-55
MsaG005152	MsaG012487	0.815690	1.407824e-51	2.769413e-49
MsaG005152	MsaG012774	0.822301	4.489527e-53	1.049616e-50
MsaG005152	MsaG012782	0.805874	1.830490e-49	2.832258e-47
MsaG005152	MsaG013231	0.800093	2.830438e-48	3.834917e-46
MsaG005152	MsaG014554	0.821079	8.576972e-53	1.941082e-50
MsaG005152	MsaG014630	0.816552	9.053556e-52	1.820486e-49
MsaG005152	MsaG014844	0.819828	1.656624e-52	3.626698e-50
MsaG005152	MsaG015284	0.847566	2.013735e-59	1.005017e-56
MsaG005152	MsaG015397	0.806944	1.091460e-49	1.731968e-47
MsaG005152	MsaG016385	0.845308	8.262974e-59	3.824571e-56
MsaG005152	MsaG016460	0.805696	1.994681e-49	3.073426e-47
MsaG005152	MsaG016472	0.809819	2.677699e-50	4.552904e-48
MsaG005152	MsaG016531	0.839440	2.919064e-57	1.119681e-54
MsaG005152	MsaG016682	0.817307	6.139157e-52	1.258753e-49
MsaG005152	MsaG016687	0.804723	3.181039e-49	4.791701e-47
MsaG005152	MsaG017106	0.805870	1.834036e-49	2.837469e-47
MsaG005152	MsaG017261	0.814935	2.068206e-51	3.991434e-49
MsaG005152	MsaG017323	0.870399	3.059896e-66	3.605747e-63
MsaG005152	MsaG017461	0.813703	3.859279e-51	7.220979e-49
MsaG005152	MsaG017825	0.808831	4.351096e-50	7.223987e-48
MsaG005152	MsaG017783	0.831377	3.115989e-55	9.381807e-53
MsaG005152	MsaG017963	0.834351	5.730352e-56	1.882666e-53
MsaG005152	MsaG018260	0.802156	1.076283e-48	1.527968e-46
MsaG005152	MsaG018266	0.807542	8.163621e-50	1.313979e-47
MsaG005152	MsaG018268	0.808443	5.262137e-50	8.655085e-48
MsaG005152	MsaG018426	0.859440	8.095719e-63	6.161933e-60
MsaG005152	MsaG018439	0.813387	4.526731e-51	8.403039e-49
MsaG005152	MsaG018501	0.829619	8.348941e-55	2.390154e-52
MsaG005152	MsaG018682	0.875052	8.645369e-68	1.246055e-64
MsaG005152	MsaG018792	0.820118	1.422986e-52	3.139503e-50
MsaG005152	MsaG019059	0.847618	1.949915e-59	9.748346e-57
MsaG005152	MsaG019209	0.804739	3.156499e-49	4.756496e-47
MsaG005152	MsaG019557	0.807405	8.726442e-50	1.399977e-47
MsaG005152	MsaG019616	0.851261	1.902449e-60	1.076885e-57
MsaG005152	MsaG019740	0.830535	5.004864e-55	1.470686e-52
MsaG005152	MsaG019937	0.819121	2.396457e-52	5.150194e-50
MsaG005152	MsaG019939	0.812955	5.624597e-51	1.032883e-48
MsaG005152	MsaG019945	0.808237	5.818728e-50	9.523364e-48
MsaG005152	MsaG020015	0.860016	5.441548e-63	4.233261e-60
MsaG005152	MsaG020356	0.802858	7.727619e-49	1.114825e-46
MsaG005152	MsaG020405	0.823974	1.835299e-53	4.489314e-51
MsaG005152	MsaG020577	0.811292	1.291500e-50	2.276207e-48
MsaG005152	MsaG020607	0.848143	1.399600e-59	7.121831e-57
MsaG005152	MsaG020593	0.824535	1.356706e-53	3.369751e-51
MsaG005152	MsaG020667	0.805907	1.801597e-49	2.789698e-47
MsaG005152	MsaG020778	0.810723	1.712612e-50	2.976623e-48
MsaG005152	MsaG021054	0.833523	9.216339e-56	2.954448e-53
MsaG005152	MsaG021095	0.808983	4.039018e-50	6.730358e-48
MsaG005152	MsaG021128	0.854652	2.060920e-61	1.314952e-58
MsaG005152	MsaG021153	0.865589	1.059565e-64	1.024750e-61
MsaG005152	MsaG021160	0.827578	2.585063e-54	6.986359e-52
MsaG005152	MsaG021343	0.823498	2.369716e-53	5.722178e-51
MsaG005152	MsaG021422	0.809262	3.522517e-50	5.908895e-48
MsaG005152	MsaG022900	0.828609	1.463590e-54	4.071481e-52
MsaG005152	MsaG022925	0.842812	3.831651e-58	1.635372e-55
MsaG005152	MsaG023035	0.827545	2.633401e-54	7.110082e-52
MsaG005152	MsaG023115	0.800770	2.063821e-48	2.839416e-46
MsaG005152	MsaG023302	0.802015	1.150660e-48	1.628285e-46
MsaG005152	MsaG023375	0.812081	8.713463e-51	1.565658e-48
MsaG005152	MsaG023582	0.828338	1.700405e-54	4.694339e-52
MsaG005152	MsaG023863	0.835597	2.791443e-56	9.518933e-54
MsaG005152	MsaG023979	0.825679	7.301977e-54	1.871564e-51
MsaG005152	MsaG024085	0.829452	9.164067e-55	2.610868e-52
MsaG005152	MsaG024122	0.812483	7.126127e-51	1.293360e-48
MsaG005152	MsaG025076	0.837575	8.794142e-57	3.183530e-54
MsaG005152	MsaG026152	0.815123	1.879192e-51	3.643819e-49
MsaG005152	MsaG026756	0.834195	6.268198e-56	2.049634e-53
MsaG005152	MsaG026771	0.813524	4.223238e-51	7.866847e-49
MsaG005152	MsaG026798	0.827953	2.103459e-54	5.744566e-52
MsaG005152	MsaG027041	0.802829	7.831838e-49	1.129128e-46
MsaG005152	MsaG027183	0.804383	3.741972e-49	5.592547e-47
MsaG005152	MsaG027305	0.822073	5.067305e-53	1.177422e-50
MsaG005152	MsaG027322	0.813862	3.562113e-51	6.691745e-49
MsaG005152	MsaG027500	0.827053	3.449864e-54	9.186568e-52
MsaG005152	MsaG027562	0.820725	1.034136e-52	2.318370e-50
MsaG005152	MsaG027802	0.839738	2.444700e-57	9.465249e-55
MsaG005152	MsaG027929	0.820439	1.201617e-52	2.673784e-50
MsaG005152	MsaG027935	0.863452	4.898576e-64	4.352056e-61
MsaG005152	MsaG028003	0.816022	1.187956e-51	2.356681e-49
MsaG005152	MsaG028282	0.807234	9.481520e-50	1.514884e-47
MsaG005152	MsaG028627	0.850112	3.988405e-60	2.169647e-57
MsaG005152	MsaG028657	0.811891	9.579526e-51	1.713388e-48
MsaG005152	MsaG029064	0.802717	8.258339e-49	1.187579e-46
MsaG005152	MsaG029174	0.816617	8.755722e-52	1.763520e-49
MsaG005152	MsaG029313	0.827234	3.124104e-54	8.361395e-52
MsaG005152	MsaG029401	0.807728	7.457836e-50	1.205766e-47
MsaG005152	MsaG029819	0.828283	1.752694e-54	4.831198e-52
MsaG005152	MsaG029916	0.802787	7.988884e-49	1.150666e-46
MsaG005152	MsaG030015	0.809687	2.857373e-50	4.842838e-48
MsaG005152	MsaG030033	0.807103	1.010344e-49	1.609302e-47
MsaG005152	MsaG030353	0.818732	2.934948e-52	6.243041e-50
MsaG005152	MsaG030494	0.804419	3.678664e-49	5.502411e-47
MsaG005152	MsaG030698	0.811813	9.962202e-51	1.778397e-48
MsaG005152	MsaG030665	0.808160	6.042127e-50	9.870620e-48
MsaG005152	MsaG030788	0.832252	1.900675e-55	5.870339e-53
MsaG005152	MsaG030888	0.834494	5.277165e-56	1.741167e-53
MsaG005152	MsaG031093	0.826825	3.908966e-54	1.034326e-51
MsaG005152	MsaG031482	0.831247	3.354695e-55	1.006170e-52
MsaG005152	MsaG031706	0.806392	1.425673e-49	2.233153e-47
MsaG005152	MsaG032424	0.820632	1.085602e-52	2.427854e-50
MsaG005152	MsaG033289	0.811472	1.180791e-50	2.090289e-48
MsaG005152	MsaG033570	0.801475	1.482719e-48	2.072660e-46
MsaG005152	MsaG034202	0.802397	9.608993e-49	1.371770e-46
MsaG005152	MsaG034510	0.808054	6.361411e-50	1.036588e-47
MsaG005152	MsaG035053	0.803586	5.471159e-49	8.026980e-47
MsaG005152	MsaG035531	0.801330	1.587636e-48	2.212032e-46
MsaG005152	MsaG035553	0.825647	7.430888e-54	1.902849e-51
MsaG005152	MsaG035715	0.824609	1.303534e-53	3.244115e-51
MsaG005152	MsaG036485	0.801182	1.701351e-48	2.362535e-46
MsaG005152	MsaG037735	0.825442	8.307006e-54	2.115143e-51
MsaG005152	MsaG038039	0.814285	2.876261e-51	5.461001e-49
MsaG005152	MsaG038081	0.814489	2.593653e-51	4.949532e-49
MsaG005152	MsaG039280	0.802183	1.062968e-48	1.509998e-46
MsaG005152	MsaG040154	0.820354	1.256912e-52	2.790500e-50
MsaG005152	MsaG040229	0.801515	1.455409e-48	2.036311e-46
MsaG005152	MsaG040599	0.820484	1.173695e-52	2.614704e-50
MsaG005152	MsaG041280	0.823995	1.814760e-53	4.441616e-51
MsaG005152	MsaG041735	0.811525	1.149763e-50	2.038002e-48
MsaG005152	MsaG042053	0.821711	6.141983e-53	1.413476e-50
MsaG005152	MsaG042149	0.816981	7.261124e-52	1.476321e-49
MsaG005152	MsaG042634	0.819009	2.541096e-52	5.444744e-50
MsaG005152	MsaG042790	0.805475	2.218309e-49	3.400318e-47
MsaG005152	MsaG042742	0.830607	4.806892e-55	1.415401e-52
MsaG005152	MsaG043716	0.818965	2.599800e-52	5.564235e-50
MsaG005152	MsaG044108	0.816000	1.201273e-51	2.381719e-49
MsaG005152	MsaG044219	0.807809	7.169775e-50	1.161450e-47
MsaG005152	MsaG044267	0.808182	5.977691e-50	9.770525e-48
MsaG005152	MsaG044570	0.867883	1.988214e-65	2.110700e-62
MsaG005152	MsaG044602	0.856253	7.072949e-62	4.782500e-59
MsaG005152	MsaG044884	0.846267	4.548829e-59	2.173637e-56
MsaG005152	MsaG045187	0.821809	5.830789e-53	1.345287e-50
MsaG005152	MsaG045234	0.803458	5.813096e-49	8.503415e-47
MsaG005152	MsaG045242	0.831366	3.136937e-55	9.441388e-53
MsaG005152	MsaG045275	0.820099	1.436998e-52	3.168874e-50
MsaG005152	MsaG045429	0.820845	9.708279e-53	2.183359e-50
MsaG005152	MsaG045456	0.826527	4.601528e-54	1.207526e-51
MsaG005152	MsaG045571	0.806627	1.272319e-49	2.004061e-47
MsaG005152	MsaG045573	0.811826	9.897955e-51	1.767493e-48
MsaG005152	MsaG045796	0.802948	7.404804e-49	1.070503e-46
MsaG005152	MsaG046172	0.806759	1.193822e-49	1.886240e-47
MsaG005152	MsaG046177	0.815045	1.955841e-51	3.784988e-49
MsaG005152	MsaG046492	0.800538	2.300301e-48	3.148161e-46
MsaG005152	MsaG046784	0.826064	5.921651e-54	1.534170e-51
MsaG005152	MsaG046948	0.827738	2.368173e-54	6.428649e-52
MsaG005152	MsaG046973	0.812268	7.934984e-51	1.432434e-48
MsaG005152	MsaG047001	0.824543	1.351108e-53	3.356555e-51
MsaG005152	MsaG003008	0.827242	3.109995e-54	8.325608e-52
MsaG005152	MsaG005823	0.801702	1.333269e-48	1.873333e-46
MsaG005152	MsaG002683	0.829236	1.033336e-54	2.925527e-52
MsaG005152	MsaG001311	0.823669	2.161475e-53	5.243956e-51
MsaG005152	MsaG003314	0.809451	3.209393e-50	5.408788e-48
MsaG005152	MsaG000821	0.809622	2.950538e-50	4.992912e-48
MsaG005152	MsaG001760	0.829834	7.407574e-55	2.133630e-52
MsaG005152	MsaG010527	0.833736	8.156286e-56	2.631120e-53
MsaG005152	MsaG008818	0.820229	1.342003e-52	2.969690e-50
MsaG005152	MsaG009219	0.812760	6.202216e-51	1.133434e-48
MsaG005152	MsaG007925	0.819132	2.382778e-52	5.122232e-50
MsaG005152	MsaG006538	0.807786	7.249703e-50	1.173765e-47
MsaG005152	MsaG008213	0.800392	2.462153e-48	3.358611e-46
MsaG005152	MsaG008699	0.813505	4.265215e-51	7.941004e-49
MsaG005152	MsaG008985	0.822144	4.880206e-53	1.136145e-50
MsaG005152	MsaG016450	0.800834	2.002682e-48	2.759202e-46
MsaG005152	MsaG013813	0.841582	8.079495e-58	3.315453e-55
MsaG005152	MsaG013040	0.803367	6.070725e-49	8.861727e-47
MsaG005152	MsaG011544	0.814002	3.318775e-51	6.256410e-49
MsaG005152	MsaG019320	0.830239	5.907148e-55	1.721269e-52
MsaG005152	MsaG018733	0.830020	6.677280e-55	1.933616e-52
MsaG005152	MsaG019406	0.837868	7.404508e-57	2.704552e-54
MsaG005152	MsaG027471	0.807762	7.336863e-50	1.187157e-47
MsaG005152	MsaG027071	0.806016	1.709747e-49	2.654183e-47
MsaG005152	MsaG026791	0.826926	3.697762e-54	9.812299e-52
MsaG005152	MsaG027141	0.853318	4.973546e-61	3.026119e-58
MsaG005152	MsaG028085	0.806728	1.211674e-49	1.913049e-47
MsaG005152	MsaG028008	0.853868	3.461545e-61	2.147753e-58
MsaG005152	MsaG026524	0.811019	1.478468e-50	2.588358e-48
MsaG005152	MsaG028138	0.812006	9.047773e-51	1.622793e-48
MsaG005152	MsaG028298	0.814432	2.669545e-51	5.087249e-49
MsaG005152	MsaG032293	0.804139	4.204726e-49	6.248643e-47
MsaG005152	MsaG031608	0.865639	1.021989e-64	9.903631e-62
MsaG005152	MsaG032302	0.816309	1.025391e-51	2.049145e-49
MsaG005152	MsaG033833	0.816779	8.055580e-52	1.629324e-49
MsaG005152	MsaG030552	0.835611	2.767762e-56	9.442323e-54
MsaG005152	MsaG030622	0.841863	6.817367e-58	2.822810e-55
MsaG005152	MsaG032721	0.805234	2.490020e-49	3.795639e-47
MsaG005152	MsaG030574	0.802163	1.073047e-48	1.523607e-46
MsaG005152	MsaG030876	0.819450	2.018098e-52	4.374653e-50
MsaG005152	MsaG038135	0.826415	4.891423e-54	1.279646e-51
MsaG005152	MsaG034916	0.859891	5.931991e-63	4.592816e-60
MsaG005152	MsaG038024	0.841273	9.737054e-58	3.956608e-55
MsaG005152	MsaG037652	0.840735	1.346066e-57	5.377191e-55
MsaG005152	MsaG035337	0.831129	3.585016e-55	1.071640e-52
MsaG005152	MsaG037437	0.800898	1.943705e-48	2.681766e-46
MsaG005152	MsaG036891	0.838366	5.518586e-57	2.046972e-54
MsaG005152	MsaG036763	0.801852	1.242128e-48	1.751295e-46
MsaG005152	MsaG037829	0.819189	2.313302e-52	4.980316e-50
MsaG005152	MsaG036311	0.824700	1.241054e-53	3.096325e-51
MsaG005152	MsaG036344	0.802280	1.015184e-48	1.445354e-46
MsaG005152	MsaG045902	0.831547	2.831795e-55	8.568696e-53
MsaG005152	MsaG044173	0.803602	5.427727e-49	7.966231e-47
MsaG005152	MsaG041725	0.825422	8.395656e-54	2.136542e-51
MsaG005152	MsaG041132	0.821502	6.859115e-53	1.569735e-50
MsaG005152	MsaG046904	0.854375	2.476116e-61	1.564527e-58

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005152	MtrunA17_Chr1g0204951	94.737	190	10	0	2	191	1	190	1.02e-129	362
MsaG005152	MtrunA17_Chr1g0204971	85.263	190	28	0	2	191	1	190	1.24e-119	336
MsaG005152	MtrunA17_Chr5g0394621	65.104	192	63	2	2	191	1	190	3.39e-87	254
MsaG005152	MtrunA17_Chr5g0394631	62.842	183	64	2	2	182	1	181	7.74e-76	233
MsaG005152	MtrunA17_Chr5g0394631	58.376	197	68	6	1	191	213	401	6.75e-70	217
MsaG005152	MtrunA17_Chr7g0273661	47.436	156	77	2	20	173	4	156	2.24e-44	144
MsaG005152	MtrunA17_Chr7g0223351	43.373	166	91	3	23	188	7	169	2.56e-39	132
MsaG005152	MtrunA17_Chr7g0223361	39.766	171	101	2	18	188	2	170	3.10e-38	129

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005152	AT2G32020.1	53.892	167	72	3	23	188	18	180	4.94e-59	183
MsaG005152	AT2G32030.1	48.404	188	91	4	2	188	3	185	9.14e-58	180
MsaG005152	AT3G22560.1	41.954	174	94	3	19	188	2	172	1.35e-38	130

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCTTCTTTAGCATCTGATT+TGG	0.255230	1:+78285445	None:intergenic
CCGTCTTCTTTGTTTGTATA+AGG	0.260514	1:+78285308	None:intergenic
TGCTATGAGCTCCAAGTATT+GGG	0.261207	1:-78285150	MsaT005152.1:CDS
TTCAGATCTTGATGATGTTT+TGG	0.285412	1:-78285375	MsaT005152.1:CDS
GAGATTTGCTTGCTATGTTT+TGG	0.329625	1:+78285273	None:intergenic
TAATGGGTCGAAGAGATATT+TGG	0.336769	1:+78285402	None:intergenic
ATCAAGATCTGAAAGACTAA+TGG	0.348689	1:+78285385	None:intergenic
TTTAGCATCTGATTTGGAAT+AGG	0.367598	1:+78285451	None:intergenic
ATTACCTTTGCCCCAATACT+TGG	0.396577	1:+78285139	None:intergenic
TGCCTTCGCGATCGAGCAAT+CGG	0.411073	1:-78285233	MsaT005152.1:CDS
CAGAGGGTGTTGGAGAAGGC+TGG	0.411839	1:-78285017	MsaT005152.1:CDS
ACATAGCAAGCAAATCTCTA+TGG	0.412043	1:-78285268	MsaT005152.1:CDS
AGGAACAAATCTGCTGAACT+TGG	0.442081	1:-78285176	MsaT005152.1:CDS
ATGCTATGAGCTCCAAGTAT+TGG	0.448265	1:-78285151	MsaT005152.1:CDS
CTTGAGCTTCAAGCCGCTCC+AGG	0.458231	1:+78285063	None:intergenic
TCAAGATCTGAAAGACTAAT+GGG	0.460408	1:+78285386	None:intergenic
TTCTCAGAGGGTGTTGGAGA+AGG	0.470170	1:-78285021	MsaT005152.1:CDS
CAGAAAATATCTGTTCATCA+AGG	0.472630	1:-78284973	MsaT005152.1:CDS
GCTTCAAGCCGCTCCAGGTA+TGG	0.487071	1:+78285068	None:intergenic
AGGTTCCCAAGTGCAATACT+TGG	0.527166	1:+78285328	None:intergenic
AGCTCCAAGTATTGGGGCAA+AGG	0.537498	1:-78285143	MsaT005152.1:CDS
TAGAAAATGTGGCTTCTCAG+AGG	0.540854	1:-78285034	MsaT005152.1:CDS
ATTTAAAGAGTTTCCATACC+TGG	0.542410	1:-78285081	MsaT005152.1:CDS
GCCTTCGCGATCGAGCAATC+GGG	0.544699	1:-78285232	MsaT005152.1:CDS
TGTGGCTTCTCAGAGGGTGT+TGG	0.549890	1:-78285027	MsaT005152.1:CDS
AGAAAATATCTGTTCATCAA+GGG	0.554840	1:-78284972	MsaT005152.1:CDS
TCAAGTTGATGTAGAAAATG+TGG	0.572167	1:-78285045	MsaT005152.1:CDS
AAGAGTTTCCATACCTGGAG+CGG	0.585589	1:-78285076	MsaT005152.1:CDS
AAGTGGCCAAGTATTGCACT+TGG	0.601796	1:-78285334	MsaT005152.1:CDS
AGAAAATGTGGCTTCTCAGA+GGG	0.613906	1:-78285033	MsaT005152.1:CDS
CACTTGTTTGACAACAAGTG+TGG	0.622968	1:+78285115	None:intergenic
CCTTATACAAACAAAGAAGA+CGG	0.623002	1:-78285308	MsaT005152.1:CDS
CACACTTGTTGTCAAACAAG+TGG	0.638200	1:-78285114	MsaT005152.1:CDS
ACCCGATTGCTCGATCGCGA+AGG	0.639229	1:+78285231	None:intergenic
GCTATGAGCTCCAAGTATTG+GGG	0.656803	1:-78285149	MsaT005152.1:CDS
AGTGGCCAAGTATTGCACTT+GGG	0.670287	1:-78285333	MsaT005152.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	78284917	78285492	78284917	ID=MsaG005152
Chr1	mRNA	78284917	78285492	78284917	ID=MsaT005152.1;Parent=MsaG005152
Chr1	exon	78284917	78285492	78284917	ID=MsaT005152.1.exon1;Parent=MsaT005152.1
Chr1	CDS	78284917	78285492	78284917	ID=cds.MsaT005152.1;Parent=MsaT005152.1

Gene Sequence

>MsaT005152.1

ATGATGGAAAAAACTGCTACCTATTCCAAATCAGATGCTAAAGAAGAGTGTTCTGTAGTTGACTTGAGCCAAATATCTCTTCGACCCATTAGTCTTTCAGATCTTGATGATGTTTTGGTGTGGACAAGTGATGAAAAAGTGGCCAAGTATTGCACTTGGGAACCTTATACAAACAAAGAAGACGGCATTGACTTCATCCAAAACATAGCAAGCAAATCTCTATGGTTCAGAGCAATTTGCCTTCGCGATCGAGCAATCGGGTGTATCGATTTCTTTTTGTGTTCGGATAGATGCAGGAACAAATCTGCTGAACTTGGCTATGCTATGAGCTCCAAGTATTGGGGCAAAGGTAATGCCACACTTGTTGTCAAACAAGTGGTTGAAGCTGCATTTAAAGAGTTTCCATACCTGGAGCGGCTTGAAGCTCAAGTTGATGTAGAAAATGTGGCTTCTCAGAGGGTGTTGGAGAAGGCTGGTTTTCAAAGGGAGGGTGTTCTCAGAAAATATCTGTTCATCAAGGGAAAAAGTAGAGATATGGTTATGTTCAGTATTCTCTCAAGTGAAGTTCAAATTTGA

Protein sequence

>MsaT005152.1

MMEKTATYSKSDAKEECSVVDLSQISLRPISLSDLDDVLVWTSDEKVAKYCTWEPYTNKEDGIDFIQNIASKSLWFRAICLRDRAIGCIDFFLCSDRCRNKSAELGYAMSSKYWGKGNATLVVKQVVEAAFKEFPYLERLEAQVDVENVASQRVLEKAGFQREGVLRKYLFIKGKSRDMVMFSILSSEVQI*