Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005160 | XP_024630895.1 | 78.175 | 559 | 82 | 5 | 1 | 530 | 1 | 548 | 0.0 | 859 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005160 | sp|F4JIF5|TCX2_ARATH | 31.636 | 550 | 288 | 24 | 3 | 516 | 7 | 504 | 5.49e-53 | 194 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005160 | tr|A0A396K8E7|A0A396K8E7_MEDTR | 77.385 | 566 | 87 | 6 | 1 | 536 | 1 | 555 | 0.0 | 859 |
Gene ID | Type | Classification |
---|---|---|
MsaG005160 | TF | CPP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000222 | MsaG005160 | 0.828861 | 1.273227e-54 | 3.566806e-52 |
MsaG000285 | MsaG005160 | 0.831994 | 2.199328e-55 | 6.742491e-53 |
MsaG001273 | MsaG005160 | 0.883236 | 1.137866e-70 | 2.393004e-67 |
MsaG002137 | MsaG005160 | 0.820402 | 1.225249e-52 | 2.723657e-50 |
MsaG002678 | MsaG005160 | 0.839573 | 2.696317e-57 | 1.038545e-54 |
MsaG002718 | MsaG005160 | 0.834826 | 4.358794e-56 | 1.452494e-53 |
MsaG005005 | MsaG005160 | 0.892022 | 5.160327e-74 | 1.691947e-70 |
MsaG005006 | MsaG005160 | 0.804900 | 2.922960e-49 | 4.421091e-47 |
MsaG005160 | MsaG005840 | 0.812113 | 8.575516e-51 | 1.542112e-48 |
MsaG005160 | MsaG006407 | 0.809940 | 2.521963e-50 | 4.300555e-48 |
MsaG005160 | MsaG007182 | 0.860743 | 3.286388e-63 | 2.628981e-60 |
MsaG005160 | MsaG007222 | 0.818754 | 2.900756e-52 | 6.173981e-50 |
MsaG005160 | MsaG008188 | 0.807059 | 1.032193e-49 | 1.642384e-47 |
MsaG005160 | MsaG008238 | 0.858600 | 1.441284e-62 | 1.062802e-59 |
MsaG005160 | MsaG010052 | 0.812407 | 7.403495e-51 | 1.341152e-48 |
MsaG005160 | MsaG010978 | 0.847966 | 1.564656e-59 | 7.914913e-57 |
MsaG005160 | MsaG011132 | 0.803227 | 6.487419e-49 | 9.439492e-47 |
MsaG005160 | MsaG012287 | 0.804801 | 3.064629e-49 | 4.624685e-47 |
MsaG005160 | MsaG013333 | 0.819369 | 2.105707e-52 | 4.554880e-50 |
MsaG005160 | MsaG017137 | 0.801014 | 1.840738e-48 | 2.546400e-46 |
MsaG005160 | MsaG018078 | 0.841763 | 7.243646e-58 | 2.989467e-55 |
MsaG005160 | MsaG018653 | 0.812313 | 7.757218e-51 | 1.401929e-48 |
MsaG005160 | MsaG018795 | 0.804285 | 3.921991e-49 | 5.848301e-47 |
MsaG005160 | MsaG018913 | 0.811804 | 1.000674e-50 | 1.785944e-48 |
MsaG005160 | MsaG019395 | 0.842260 | 5.360417e-58 | 2.247590e-55 |
MsaG005160 | MsaG019890 | 0.812818 | 6.022921e-51 | 1.102265e-48 |
MsaG005160 | MsaG020031 | 0.817942 | 4.422267e-52 | 9.216580e-50 |
MsaG005160 | MsaG020497 | 0.844430 | 1.421482e-58 | 6.392227e-56 |
MsaG005160 | MsaG020713 | 0.815770 | 1.351127e-51 | 2.663199e-49 |
MsaG005160 | MsaG020881 | 0.801627 | 1.380528e-48 | 1.936486e-46 |
MsaG005160 | MsaG021022 | 0.804701 | 3.214297e-49 | 4.839270e-47 |
MsaG005160 | MsaG023405 | 0.807583 | 8.003285e-50 | 1.289395e-47 |
MsaG005160 | MsaG023413 | 0.827725 | 2.384146e-54 | 6.469801e-52 |
MsaG005160 | MsaG026786 | 0.825239 | 9.272587e-54 | 2.347824e-51 |
MsaG005160 | MsaG026987 | 0.805151 | 2.591395e-49 | 3.942543e-47 |
MsaG005160 | MsaG027763 | 0.815142 | 1.860920e-51 | 3.610191e-49 |
MsaG005160 | MsaG028619 | 0.812831 | 5.985641e-51 | 1.095783e-48 |
MsaG005160 | MsaG029838 | 0.818799 | 2.834043e-52 | 6.039075e-50 |
MsaG005160 | MsaG032702 | 0.825705 | 7.201518e-54 | 1.847168e-51 |
MsaG005160 | MsaG033995 | 0.844917 | 1.052589e-58 | 4.811061e-56 |
MsaG005160 | MsaG034179 | 0.815487 | 1.561582e-51 | 3.055977e-49 |
MsaG005160 | MsaG034208 | 0.801712 | 1.326878e-48 | 1.864785e-46 |
MsaG005160 | MsaG035363 | 0.821704 | 6.164564e-53 | 1.418390e-50 |
MsaG005160 | MsaG035530 | 0.807234 | 9.481520e-50 | 1.514884e-47 |
MsaG005160 | MsaG036046 | 0.830705 | 4.549805e-55 | 1.343466e-52 |
MsaG005160 | MsaG036417 | 0.849448 | 6.102768e-60 | 3.246239e-57 |
MsaG005160 | MsaG040095 | 0.809898 | 2.575422e-50 | 4.387239e-48 |
MsaG005160 | MsaG041202 | 0.837082 | 1.174462e-56 | 4.188190e-54 |
MsaG005160 | MsaG041237 | 0.805068 | 2.696693e-49 | 4.094792e-47 |
MsaG005160 | MsaG042512 | 0.831534 | 2.852288e-55 | 8.627515e-53 |
MsaG005160 | MsaG044303 | 0.821348 | 7.443568e-53 | 1.696513e-50 |
MsaG005160 | MsaG044546 | 0.841244 | 9.907168e-58 | 4.022108e-55 |
MsaG005160 | MsaG045450 | 0.803327 | 6.185920e-49 | 9.021557e-47 |
MsaG005160 | MsaG046502 | 0.844663 | 1.231593e-58 | 5.581231e-56 |
MsaG005160 | MsaG047011 | 0.806682 | 1.238947e-49 | 1.953995e-47 |
MsaG005160 | MsaG047066 | 0.828498 | 1.556672e-54 | 4.316944e-52 |
MsaG005160 | MsaG001975 | 0.812964 | 5.599391e-51 | 1.028489e-48 |
MsaG005160 | MsaG001950 | 0.808887 | 4.232854e-50 | 7.037247e-48 |
MsaG005160 | MsaG008762 | 0.807199 | 9.647598e-50 | 1.540144e-47 |
MsaG005160 | MsaG007339 | 0.835367 | 3.189598e-56 | 1.080179e-53 |
MsaG005160 | MsaG008209 | 0.807823 | 7.120160e-50 | 1.153794e-47 |
MsaG005160 | MsaG012667 | 0.807710 | 7.525536e-50 | 1.216177e-47 |
MsaG005160 | MsaG017584 | 0.810456 | 1.954699e-50 | 3.375475e-48 |
MsaG005160 | MsaG012272 | 0.804501 | 3.537788e-49 | 5.301684e-47 |
MsaG005160 | MsaG019880 | 0.800779 | 2.054813e-48 | 2.827599e-46 |
MsaG005160 | MsaG033159 | 0.841524 | 8.368640e-58 | 3.427790e-55 |
MsaG005160 | MsaG030577 | 0.803143 | 6.752064e-49 | 9.805317e-47 |
MsaG005160 | MsaG030699 | 0.811977 | 9.177989e-51 | 1.645011e-48 |
MsaG005160 | MsaG030550 | 0.842224 | 5.478045e-58 | 2.294231e-55 |
MsaG005160 | MsaG032953 | 0.841873 | 6.777789e-58 | 2.807250e-55 |
MsaG005160 | MsaG036646 | 0.840962 | 1.174275e-57 | 4.724724e-55 |
MsaG005160 | MsaG037484 | 0.824774 | 1.192543e-53 | 2.981293e-51 |
MsaG005160 | MsaG035248 | 0.804241 | 4.004126e-49 | 5.964701e-47 |
MsaG005160 | MsaG039945 | 0.810138 | 2.287557e-50 | 3.919582e-48 |
MsaG005160 | MsaG046854 | 0.812635 | 6.602186e-51 | 1.202769e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005160 | MtrunA17_Chr1g0205031 | 77.385 | 566 | 87 | 6 | 1 | 536 | 1 | 555 | 0.0 | 859 |
MsaG005160 | MtrunA17_Chr5g0394661 | 36.423 | 615 | 278 | 16 | 5 | 516 | 13 | 617 | 3.83e-90 | 293 |
MsaG005160 | MtrunA17_Chr1g0205021 | 39.739 | 307 | 80 | 8 | 16 | 295 | 2 | 230 | 1.71e-46 | 163 |
MsaG005160 | MtrunA17_Chr1g0205001 | 38.521 | 257 | 91 | 8 | 190 | 433 | 18 | 220 | 6.76e-35 | 130 |
MsaG005160 | MtrunA17_Chr1g0205001 | 71.429 | 42 | 12 | 0 | 15 | 56 | 61 | 102 | 2.40e-12 | 66.6 |
MsaG005160 | MtrunA17_Chr1g0149101 | 38.764 | 178 | 100 | 5 | 357 | 531 | 474 | 645 | 7.91e-30 | 124 |
MsaG005160 | MtrunA17_Chr1g0205011 | 47.771 | 157 | 46 | 6 | 236 | 371 | 4 | 145 | 5.83e-23 | 97.4 |
MsaG005160 | MtrunA17_Chr8g0390351 | 41.481 | 135 | 69 | 4 | 386 | 516 | 83 | 211 | 6.77e-23 | 102 |
MsaG005160 | MtrunA17_Chr6g0485811 | 42.222 | 135 | 68 | 4 | 386 | 516 | 128 | 256 | 7.01e-23 | 102 |
MsaG005160 | MtrunA17_Chr3g0139951 | 43.200 | 125 | 68 | 3 | 386 | 510 | 148 | 269 | 2.08e-20 | 93.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005160 | AT4G14770.1 | 31.636 | 550 | 288 | 24 | 3 | 516 | 7 | 504 | 5.58e-54 | 194 |
MsaG005160 | AT3G22780.1 | 29.676 | 556 | 311 | 15 | 16 | 526 | 22 | 542 | 2.11e-52 | 190 |
MsaG005160 | AT4G14770.3 | 31.343 | 536 | 281 | 23 | 16 | 516 | 2 | 485 | 3.31e-52 | 189 |
MsaG005160 | AT4G14770.2 | 31.402 | 535 | 280 | 23 | 17 | 516 | 2 | 484 | 5.07e-52 | 188 |
MsaG005160 | AT3G22760.1 | 29.981 | 537 | 264 | 17 | 16 | 528 | 21 | 469 | 4.47e-50 | 182 |
MsaG005160 | AT3G22760.2 | 36.275 | 306 | 151 | 7 | 234 | 528 | 74 | 346 | 4.15e-49 | 177 |
MsaG005160 | AT3G04850.1 | 39.147 | 258 | 130 | 7 | 267 | 510 | 332 | 576 | 9.93e-41 | 156 |
MsaG005160 | AT5G25790.3 | 39.735 | 151 | 81 | 4 | 386 | 536 | 95 | 235 | 2.34e-24 | 106 |
MsaG005160 | AT5G25790.1 | 37.748 | 151 | 88 | 3 | 386 | 536 | 95 | 239 | 1.85e-23 | 103 |
MsaG005160 | AT5G25790.2 | 37.748 | 151 | 88 | 3 | 386 | 536 | 95 | 239 | 1.98e-23 | 103 |
MsaG005160 | AT2G20110.3 | 38.272 | 162 | 88 | 5 | 353 | 510 | 88 | 241 | 1.15e-21 | 99.0 |
MsaG005160 | AT2G20110.2 | 38.272 | 162 | 88 | 5 | 353 | 510 | 88 | 241 | 1.40e-21 | 99.0 |
MsaG005160 | AT2G20110.1 | 38.272 | 162 | 88 | 5 | 353 | 510 | 88 | 241 | 1.43e-21 | 99.0 |
MsaG005160 | AT4G29000.1 | 38.931 | 131 | 78 | 2 | 386 | 516 | 132 | 260 | 1.74e-20 | 95.5 |
MsaG005160 | AT3G16160.1 | 42.276 | 123 | 66 | 3 | 386 | 508 | 66 | 183 | 2.69e-18 | 87.0 |
Find 92 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTGCCAATGTTGCTTTAA+TGG | 0.092114 | 1:-78339642 | MsaT005160.1:CDS |
TATGCCTTCGTAATGATTTA+AGG | 0.098318 | 1:+78338915 | None:intergenic |
CCAGAATTCTTTCGAACTTT+AGG | 0.204484 | 1:+78337862 | None:intergenic |
CCTAAAGTTCGAAAGAATTC+TGG | 0.241815 | 1:-78337862 | MsaT005160.1:CDS |
TTGCACTTCACTCGTCCTTT+TGG | 0.274158 | 1:+78338696 | None:intergenic |
CTTTGAAGCTGGAGCTTTGT+TGG | 0.274516 | 1:+78337729 | None:intergenic |
TAAGTGCAGCTCGGTGATTC+AGG | 0.293566 | 1:+78338862 | None:intergenic |
TACTGGTAGATTGTGGTAAC+AGG | 0.297737 | 1:+78339780 | None:intergenic |
TTTGAAGCTGGAGCTTTGTT+GGG | 0.308021 | 1:+78337730 | None:intergenic |
TTTCTGTCTGTTGCGGCTAT+TGG | 0.313269 | 1:+78339680 | None:intergenic |
GAATATGGACTCGTCGTTAA+AGG | 0.316508 | 1:+78340200 | None:intergenic |
ACACCAAAGTTCGACTTTGC+AGG | 0.317208 | 1:-78338429 | MsaT005160.1:intron |
TTGAAGGTGGAACATTTATT+CGG | 0.321966 | 1:-78339856 | MsaT005160.1:CDS |
AATGTTGACCCACTTGCTTT+TGG | 0.345110 | 1:-78339737 | MsaT005160.1:CDS |
CACCCTTCACATTTACAACT+TGG | 0.349859 | 1:+78337535 | None:intergenic |
CAAGTACCTCGTGAGGAATA+TGG | 0.357398 | 1:+78340185 | None:intergenic |
CACCAATGGAGACACATTTA+CGG | 0.379389 | 1:-78338789 | MsaT005160.1:CDS |
ACAGCCTCAGATGAAAGTTC+AGG | 0.391141 | 1:+78340058 | None:intergenic |
CTGCGTCGTCGCTTTGAAGC+TGG | 0.396100 | 1:+78337718 | None:intergenic |
TGAAATTGAAGACAATCCTT+TGG | 0.408389 | 1:-78339705 | MsaT005160.1:CDS |
AAGTCATCAGTTCACATTCC+TGG | 0.424450 | 1:-78338742 | MsaT005160.1:CDS |
AGAGTTGCTCCTTTGCATAC+TGG | 0.425375 | 1:+78339026 | None:intergenic |
AATTGTGGCTGCTTTGCTGC+TGG | 0.427566 | 1:-78338000 | MsaT005160.1:CDS |
AAGTATCTTCTTGAATTACT+TGG | 0.428004 | 1:-78339932 | MsaT005160.1:CDS |
AAGTTATTGTAATCACAATC+TGG | 0.434332 | 1:+78339827 | None:intergenic |
ACCCTTCACATTTACAACTT+GGG | 0.434704 | 1:+78337536 | None:intergenic |
TGAAGGTGGAACATTTATTC+GGG | 0.437173 | 1:-78339855 | MsaT005160.1:CDS |
TAGTTTCTGACCACAATTTG+AGG | 0.447183 | 1:+78337832 | None:intergenic |
CTCCTACTCGCAGTGGTGGC+AGG | 0.454782 | 1:-78337276 | MsaT005160.1:intron |
CCCTTCACATTTACAACTTG+GGG | 0.459373 | 1:+78337537 | None:intergenic |
TTAAATATTTCTGTAAGTCA+AGG | 0.471447 | 1:-78338835 | MsaT005160.1:CDS |
TCTTGTACATCCGTACCATC+TGG | 0.499848 | 1:+78339899 | None:intergenic |
CCTTCGTAATGATTTAAGGC+TGG | 0.512377 | 1:+78338919 | None:intergenic |
GCTATCCATTAAAGCAACAT+TGG | 0.513739 | 1:+78339637 | None:intergenic |
TAAATATTTCTGTAAGTCAA+GGG | 0.524834 | 1:-78338834 | MsaT005160.1:CDS |
TGGTTCCTCACCTCAAATTG+TGG | 0.524835 | 1:-78337842 | MsaT005160.1:intron |
GCAGAATACGATGCAAGTGC+AGG | 0.525356 | 1:-78337699 | MsaT005160.1:CDS |
CGAACTTTAGGAACAAATGC+AGG | 0.526329 | 1:+78337874 | None:intergenic |
GGAACAAGTCAGATCTAACT+AGG | 0.530885 | 1:-78338408 | MsaT005160.1:CDS |
CGAAAATATACATGGTAGGA+AGG | 0.533470 | 1:-78337512 | MsaT005160.1:CDS |
TGCTTGATTTCTGTCTGTTG+CGG | 0.536356 | 1:+78339673 | None:intergenic |
CACACTTCTGTGAATCACTA+GGG | 0.539386 | 1:+78338977 | None:intergenic |
TTGAAGCTGGAGCTTTGTTG+GGG | 0.541047 | 1:+78337731 | None:intergenic |
GTTGCGGCTATTGGTTCCAA+AGG | 0.544179 | 1:+78339689 | None:intergenic |
TTAAAGGAGATAGAGTATTG+AGG | 0.545460 | 1:+78340310 | None:intergenic |
ATACAGTTCTGCAAGCTCGC+AGG | 0.548799 | 1:-78337918 | MsaT005160.1:CDS |
ACACACTTCTGTGAATCACT+AGG | 0.552964 | 1:+78338976 | None:intergenic |
TCCGTCAGAGTACTCCCAAA+AGG | 0.555631 | 1:-78338711 | MsaT005160.1:CDS |
CCTCTCGTGAGTTGGAAACA+AGG | 0.556689 | 1:+78340570 | None:intergenic |
ACTGAGACGCTGAACTCACT+TGG | 0.558175 | 1:-78340258 | MsaT005160.1:CDS |
ATCTCAAGTCTCTGCACCAA+TGG | 0.560130 | 1:-78338803 | MsaT005160.1:CDS |
ATGAAAAGATGTCTTCTCAA+AGG | 0.565868 | 1:-78338888 | MsaT005160.1:CDS |
GCTGCTGGAGTCTACTGCAC+AGG | 0.566140 | 1:-78337985 | MsaT005160.1:CDS |
CTCTGACGGAAATCTTCACC+AGG | 0.567030 | 1:+78338724 | None:intergenic |
CAGATCTAACTAGGAAAGGA+GGG | 0.570663 | 1:-78338399 | MsaT005160.1:CDS |
AAGTCAGATCTAACTAGGAA+AGG | 0.571577 | 1:-78338403 | MsaT005160.1:CDS |
AGCCGTAAATGTGTCTCCAT+TGG | 0.572557 | 1:+78338787 | None:intergenic |
CTCTCGTGAGTTGGAAACAA+GGG | 0.577501 | 1:+78340571 | None:intergenic |
TCAGATCTAACTAGGAAAGG+AGG | 0.580562 | 1:-78338400 | MsaT005160.1:CDS |
CTACAGATTCAACTCATGCA+TGG | 0.581951 | 1:-78340006 | MsaT005160.1:CDS |
CAAGCAAGAACCAGATGGTA+CGG | 0.582545 | 1:-78339909 | MsaT005160.1:CDS |
AGTATACAGATGAGCTGTCA+AGG | 0.583545 | 1:-78339066 | MsaT005160.1:CDS |
TTGCTATTACTGGTAGATTG+TGG | 0.588055 | 1:+78339773 | None:intergenic |
GACGCTGAACTCACTTGGCA+TGG | 0.589852 | 1:-78340253 | MsaT005160.1:CDS |
AAATCCTGAACTTTCATCTG+AGG | 0.591883 | 1:-78340062 | MsaT005160.1:CDS |
GGTGGAACATTTATTCGGGA+AGG | 0.592387 | 1:-78339851 | MsaT005160.1:CDS |
ACATCGAGTGATGTGAAAAG+AGG | 0.592896 | 1:+78340225 | None:intergenic |
GATAGCAATCAAATTAAGAG+AGG | 0.597084 | 1:-78339620 | MsaT005160.1:CDS |
CAACAGACAGAAATCAAGCA+CGG | 0.597880 | 1:-78339670 | MsaT005160.1:CDS |
ATAGCAATCAAATTAAGAGA+GGG | 0.602322 | 1:-78339619 | MsaT005160.1:CDS |
TCTGACCACAATTTGAGGTG+AGG | 0.607327 | 1:+78337837 | None:intergenic |
CCTTGTTTCCAACTCACGAG+AGG | 0.612973 | 1:-78340570 | MsaT005160.1:intron |
TCCCCAAGTTGTAAATGTGA+AGG | 0.615749 | 1:-78337538 | MsaT005160.1:CDS |
CATGCATGAGTTGAATCTGT+AGG | 0.615864 | 1:+78340007 | None:intergenic |
GGTGCGAAAATATACATGGT+AGG | 0.616427 | 1:-78337516 | MsaT005160.1:CDS |
GTCACAGATGTAGTTGAAGG+TGG | 0.621901 | 1:-78339869 | MsaT005160.1:CDS |
AGGAATGTGAACTGATGACT+TGG | 0.627401 | 1:+78338744 | None:intergenic |
TTTAAAGAATAAGTGCAGCT+CGG | 0.628487 | 1:+78338853 | None:intergenic |
ACTTTAGGAACAAATGCAGG+TGG | 0.632470 | 1:+78337877 | None:intergenic |
CTGAGATGACCAGTATGCAA+AGG | 0.633227 | 1:-78339035 | MsaT005160.1:CDS |
ACTGGTAGATTGTGGTAACA+GGG | 0.636581 | 1:+78339781 | None:intergenic |
TCTGTCACAGATGTAGTTGA+AGG | 0.639278 | 1:-78339872 | MsaT005160.1:CDS |
AATTAAGAGAGGGGATGATG+AGG | 0.639810 | 1:-78339609 | MsaT005160.1:intron |
AGATCTAACTAGGAAAGGAG+GGG | 0.643115 | 1:-78338398 | MsaT005160.1:CDS |
GAAGGGTGCGAAAATATACA+TGG | 0.643125 | 1:-78337520 | MsaT005160.1:CDS |
CTTGGCAAGCAAGAACCAGA+TGG | 0.652633 | 1:-78339914 | MsaT005160.1:CDS |
AAGCAGTCTTGACATGAGCA+AGG | 0.654291 | 1:+78337961 | None:intergenic |
AAAGGAGCAACTCTGATGAG+AGG | 0.655315 | 1:-78339017 | MsaT005160.1:CDS |
TAGCAATCAAATTAAGAGAG+GGG | 0.656836 | 1:-78339618 | MsaT005160.1:CDS |
CCCCAAGTTGTAAATGTGAA+GGG | 0.657560 | 1:-78337537 | MsaT005160.1:CDS |
CCAGCCTTAAATCATTACGA+AGG | 0.687773 | 1:-78338919 | MsaT005160.1:CDS |
ACGAGTCCATATTCCTCACG+AGG | 0.713943 | 1:-78340191 | MsaT005160.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 78337263 | 78340618 | 78337263 | ID=MsaG005160 |
Chr1 | mRNA | 78337263 | 78340618 | 78337263 | ID=MsaT005160.1;Parent=MsaG005160 |
Chr1 | exon | 78337263 | 78337285 | 78337263 | ID=MsaT005160.1.exon9;Parent=MsaT005160.1 |
Chr1 | CDS | 78337263 | 78337285 | 78337263 | ID=cds.MsaT005160.1;Parent=MsaT005160.1 |
Chr1 | exon | 78337446 | 78337575 | 78337446 | ID=MsaT005160.1.exon8;Parent=MsaT005160.1 |
Chr1 | CDS | 78337446 | 78337575 | 78337446 | ID=cds.MsaT005160.1;Parent=MsaT005160.1 |
Chr1 | exon | 78337660 | 78337758 | 78337660 | ID=MsaT005160.1.exon7;Parent=MsaT005160.1 |
Chr1 | CDS | 78337660 | 78337758 | 78337660 | ID=cds.MsaT005160.1;Parent=MsaT005160.1 |
Chr1 | exon | 78337843 | 78338023 | 78337843 | ID=MsaT005160.1.exon6;Parent=MsaT005160.1 |
Chr1 | CDS | 78337843 | 78338023 | 78337843 | ID=cds.MsaT005160.1;Parent=MsaT005160.1 |
Chr1 | exon | 78338355 | 78338442 | 78338355 | ID=MsaT005160.1.exon5;Parent=MsaT005160.1 |
Chr1 | CDS | 78338355 | 78338442 | 78338355 | ID=cds.MsaT005160.1;Parent=MsaT005160.1 |
Chr1 | exon | 78338707 | 78339106 | 78338707 | ID=MsaT005160.1.exon4;Parent=MsaT005160.1 |
Chr1 | CDS | 78338707 | 78339106 | 78338707 | ID=cds.MsaT005160.1;Parent=MsaT005160.1 |
Chr1 | exon | 78339610 | 78340105 | 78339610 | ID=MsaT005160.1.exon3;Parent=MsaT005160.1 |
Chr1 | CDS | 78339610 | 78340105 | 78339610 | ID=cds.MsaT005160.1;Parent=MsaT005160.1 |
Chr1 | exon | 78340192 | 78340352 | 78340192 | ID=MsaT005160.1.exon2;Parent=MsaT005160.1 |
Chr1 | CDS | 78340192 | 78340352 | 78340192 | ID=cds.MsaT005160.1;Parent=MsaT005160.1 |
Chr1 | exon | 78340571 | 78340618 | 78340571 | ID=MsaT005160.1.exon1;Parent=MsaT005160.1 |
Chr1 | CDS | 78340571 | 78340618 | 78340571 | ID=cds.MsaT005160.1;Parent=MsaT005160.1 |
Gene Sequence |
Protein sequence |