Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005165 | XP_024630896.1 | 97.007 | 401 | 6 | 4 | 1 | 399 | 1 | 397 | 0.0 | 797 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005165 | sp|Q9FYG7|TCP1_ARATH | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 1.23e-25 | 110 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005165 | tr|A0A396K243|A0A396K243_MEDTR | 97.007 | 401 | 6 | 4 | 1 | 399 | 1 | 397 | 0.0 | 797 |
Gene ID | Type | Classification |
---|---|---|
MsaG005165 | TF | TCP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005165 | MtrunA17_Chr1g0205131 | 97.007 | 401 | 6 | 4 | 1 | 399 | 1 | 397 | 0.0 | 797 |
MsaG005165 | MtrunA17_Chr6g0456881 | 41.250 | 320 | 98 | 13 | 110 | 393 | 126 | 391 | 4.06e-47 | 167 |
MsaG005165 | MtrunA17_Chr7g0220931 | 36.164 | 365 | 155 | 12 | 41 | 393 | 57 | 355 | 2.27e-38 | 142 |
MsaG005165 | MtrunA17_Chr4g0062691 | 40.625 | 160 | 66 | 4 | 96 | 238 | 120 | 267 | 1.18e-20 | 93.2 |
MsaG005165 | MtrunA17_Chr8g0376571 | 35.404 | 161 | 69 | 3 | 109 | 236 | 60 | 218 | 2.92e-17 | 83.6 |
MsaG005165 | MtrunA17_Chr4g0040921 | 55.738 | 61 | 27 | 0 | 109 | 169 | 21 | 81 | 4.71e-17 | 81.6 |
MsaG005165 | MtrunA17_Chr8g0360441 | 55.738 | 61 | 27 | 0 | 109 | 169 | 53 | 113 | 1.30e-16 | 81.3 |
MsaG005165 | MtrunA17_Chr2g0316391 | 57.377 | 61 | 26 | 0 | 109 | 169 | 19 | 79 | 1.56e-16 | 79.7 |
MsaG005165 | MtrunA17_Chr2g0325171 | 53.333 | 60 | 28 | 0 | 109 | 168 | 23 | 82 | 1.91e-16 | 80.1 |
MsaG005165 | MtrunA17_Chr4g0061561 | 37.037 | 108 | 67 | 1 | 109 | 216 | 56 | 162 | 2.43e-13 | 70.5 |
MsaG005165 | MtrunA17_Chr6g0454781 | 51.667 | 60 | 29 | 0 | 109 | 168 | 48 | 107 | 2.68e-13 | 70.5 |
MsaG005165 | MtrunA17_Chr7g0219461 | 44.444 | 81 | 45 | 0 | 109 | 189 | 56 | 136 | 1.38e-12 | 68.6 |
MsaG005165 | MtrunA17_Chr3g0086961 | 48.333 | 60 | 31 | 0 | 109 | 168 | 56 | 115 | 1.73e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005165 | AT1G67260.2 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 9.91e-27 | 110 |
MsaG005165 | AT1G67260.3 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 9.91e-27 | 110 |
MsaG005165 | AT1G67260.1 | 42.690 | 171 | 67 | 5 | 110 | 253 | 87 | 253 | 1.25e-26 | 110 |
MsaG005165 | AT1G68800.2 | 68.182 | 66 | 21 | 0 | 110 | 175 | 112 | 177 | 3.48e-21 | 94.7 |
MsaG005165 | AT1G68800.1 | 68.182 | 66 | 21 | 0 | 110 | 175 | 112 | 177 | 3.68e-21 | 94.4 |
MsaG005165 | AT3G18550.2 | 30.043 | 233 | 104 | 8 | 61 | 235 | 66 | 297 | 1.23e-18 | 87.8 |
MsaG005165 | AT3G18550.3 | 31.034 | 232 | 101 | 8 | 61 | 234 | 66 | 296 | 1.73e-18 | 87.4 |
MsaG005165 | AT3G18550.1 | 29.958 | 237 | 103 | 9 | 61 | 235 | 66 | 301 | 3.14e-18 | 86.7 |
MsaG005165 | AT3G18550.4 | 29.958 | 237 | 103 | 9 | 61 | 235 | 66 | 301 | 3.14e-18 | 86.7 |
MsaG005165 | AT4G18390.1 | 39.850 | 133 | 68 | 2 | 109 | 236 | 41 | 166 | 3.44e-18 | 85.9 |
MsaG005165 | AT4G18390.2 | 39.850 | 133 | 68 | 2 | 109 | 236 | 41 | 166 | 3.44e-18 | 85.9 |
MsaG005165 | AT1G30210.2 | 42.188 | 128 | 57 | 3 | 109 | 236 | 49 | 159 | 2.09e-17 | 83.2 |
MsaG005165 | AT1G30210.1 | 42.188 | 128 | 57 | 3 | 109 | 236 | 49 | 159 | 2.09e-17 | 83.2 |
MsaG005165 | AT1G53230.1 | 56.452 | 62 | 27 | 0 | 109 | 170 | 48 | 109 | 5.40e-17 | 82.8 |
MsaG005165 | AT1G53230.2 | 56.452 | 62 | 27 | 0 | 109 | 170 | 48 | 109 | 5.40e-17 | 82.8 |
MsaG005165 | AT3G15030.2 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.02e-16 | 82.0 |
MsaG005165 | AT3G15030.4 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.02e-16 | 82.0 |
MsaG005165 | AT3G15030.3 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.02e-16 | 82.0 |
MsaG005165 | AT3G15030.1 | 57.377 | 61 | 26 | 0 | 109 | 169 | 44 | 104 | 1.02e-16 | 82.0 |
MsaG005165 | AT2G31070.1 | 56.667 | 60 | 26 | 0 | 109 | 168 | 28 | 87 | 2.56e-16 | 80.5 |
MsaG005165 | AT3G02150.1 | 51.667 | 60 | 29 | 0 | 109 | 168 | 73 | 132 | 2.05e-12 | 67.8 |
MsaG005165 | AT3G02150.2 | 51.667 | 60 | 29 | 0 | 109 | 168 | 73 | 132 | 2.49e-12 | 68.2 |
MsaG005165 | AT5G60970.1 | 46.667 | 60 | 32 | 0 | 109 | 168 | 62 | 121 | 2.29e-11 | 65.5 |
Find 75 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTCTGTCACAACATAATT+TGG | 0.114937 | 1:+78436664 | None:intergenic |
GATGAAGAAGGGAAATTATT+AGG | 0.155951 | 1:+78436928 | None:intergenic |
TCCCTTGTTCAACTCCAAAT+TGG | 0.198049 | 1:-78435832 | MsaT005165.1:CDS |
CCTTAGGGATAGTAGGAATT+AGG | 0.215420 | 1:+78435903 | None:intergenic |
AGAAAAGAAAGGGTACTATT+AGG | 0.235751 | 1:+78436889 | None:intergenic |
TGGAGTTGAACAAGGGAATA+AGG | 0.272402 | 1:+78435838 | None:intergenic |
TTGGAGCTAGTCTCCCAATT+TGG | 0.297661 | 1:+78435818 | None:intergenic |
AAGAAGAGTAGTATTGTTAT+TGG | 0.300314 | 1:+78436837 | None:intergenic |
TTGAAACTTGGTAATTCCTT+AGG | 0.318513 | 1:+78435887 | None:intergenic |
TCATAATCATCATAACCTAT+TGG | 0.320855 | 1:-78436032 | MsaT005165.1:CDS |
GGATAGTAGGAATTAGGTTT+TGG | 0.326225 | 1:+78435909 | None:intergenic |
AAACAACCAGCAGCAGTTAT+AGG | 0.340022 | 1:-78436640 | MsaT005165.1:CDS |
GAATGCAACAAGAAGAAATT+AGG | 0.347577 | 1:-78436210 | MsaT005165.1:CDS |
AGGAATCCATTATGATTAGA+AGG | 0.357973 | 1:-78435967 | MsaT005165.1:CDS |
GAAAAGAAAGGGTACTATTA+GGG | 0.366150 | 1:+78436890 | None:intergenic |
CAAGATAATGGCTACAACTT+TGG | 0.372622 | 1:-78436709 | MsaT005165.1:CDS |
AGAAGAGTAGTATTGTTATT+GGG | 0.374456 | 1:+78436838 | None:intergenic |
ATGAAGAAGGGAAATTATTA+GGG | 0.385216 | 1:+78436929 | None:intergenic |
CCCTTGTTCAACTCCAAATT+GGG | 0.387307 | 1:-78435831 | MsaT005165.1:CDS |
CATGTTCCTTCTAATCATAA+TGG | 0.388796 | 1:+78435961 | None:intergenic |
GCAATGTTTGAACAAGATAA+TGG | 0.390494 | 1:-78436721 | MsaT005165.1:CDS |
TAGGTATTTCACTATCCAAT+AGG | 0.395659 | 1:+78436017 | None:intergenic |
TTTCCTCCTATAACTGCTGC+TGG | 0.420270 | 1:+78436634 | None:intergenic |
AAAAGAAGGGTTACTACTAT+AGG | 0.421997 | 1:+78436054 | None:intergenic |
GGTAATTCCTTAGGGATAGT+AGG | 0.423994 | 1:+78435896 | None:intergenic |
GTTGAATCTGCACCAGGTCC+AGG | 0.426040 | 1:+78436184 | None:intergenic |
ATGTTGGATCAGCAGATATA+GGG | 0.429811 | 1:-78433457 | MsaT005165.1:CDS |
AGCCACTCAAGTGTGTTACT+TGG | 0.429932 | 1:+78436493 | None:intergenic |
CAATCTGCAAAATTAGCATC+AGG | 0.430784 | 1:+78436754 | None:intergenic |
TTATAGGAGGAAAGAAAGAT+AGG | 0.430839 | 1:-78436624 | MsaT005165.1:CDS |
TTAATATTGTGGTTGAAACT+TGG | 0.430928 | 1:+78435875 | None:intergenic |
ATGGTAGTTGTTCTTCTAAA+GGG | 0.432683 | 1:-78436339 | MsaT005165.1:CDS |
AATGTTGGATCAGCAGATAT+AGG | 0.432836 | 1:-78433458 | MsaT005165.1:CDS |
CTAAAGGGAGAAAATTGAAA+TGG | 0.439828 | 1:-78436324 | MsaT005165.1:CDS |
GATGGTAGTTGTTCTTCTAA+AGG | 0.443495 | 1:-78436340 | MsaT005165.1:CDS |
AATCATTATTATTAATATTG+TGG | 0.455465 | 1:+78435864 | None:intergenic |
TGAAACTTGGTAATTCCTTA+GGG | 0.456765 | 1:+78435888 | None:intergenic |
GAAGAAGATGATGATGAAGA+AGG | 0.460599 | 1:+78436916 | None:intergenic |
TTATGATGATTATGAAAAGA+AGG | 0.467263 | 1:+78436040 | None:intergenic |
GTCACAACATAATTTGGAAT+CGG | 0.469967 | 1:+78436670 | None:intergenic |
TCCGGCGGTGGTGGCGGAGA+TGG | 0.472879 | 1:-78436358 | MsaT005165.1:CDS |
AAGAAGATGATGATGAAGAA+GGG | 0.474146 | 1:+78436917 | None:intergenic |
AGTGGCTATTCCACAAAAGT+TGG | 0.483262 | 1:+78435799 | None:intergenic |
TCAGTTTCAGTACTATCAAC+AGG | 0.489731 | 1:+78436115 | None:intergenic |
TCTACAGAAGAAATGAATGT+TGG | 0.493666 | 1:-78433473 | MsaT005165.1:CDS |
ACCATCTCCGCCACCACCGC+CGG | 0.512985 | 1:+78436357 | None:intergenic |
ATTGTCAATGAGAAAAGAAA+GGG | 0.521480 | 1:+78436879 | None:intergenic |
TATGATGATTATGAAAAGAA+GGG | 0.526879 | 1:+78436041 | None:intergenic |
GATTGTCAATGAGAAAAGAA+AGG | 0.527029 | 1:+78436878 | None:intergenic |
AGTGAAATACCTAGAGATCA+TGG | 0.535750 | 1:-78436007 | MsaT005165.1:CDS |
TTAAATCCACCATGATCTCT+AGG | 0.537094 | 1:+78435998 | None:intergenic |
GTATTTGTTGAATCTGCACC+AGG | 0.542255 | 1:+78436178 | None:intergenic |
TGGTGGATTTAATGTGATTG+AGG | 0.542326 | 1:-78435987 | MsaT005165.1:CDS |
CCTAATTCCTACTATCCCTA+AGG | 0.544884 | 1:-78435903 | MsaT005165.1:CDS |
TCCCAATTTGGAGTTGAACA+AGG | 0.545085 | 1:+78435830 | None:intergenic |
CAAGAGCAAGAGCTAGAGAA+AGG | 0.553192 | 1:-78436261 | MsaT005165.1:CDS |
GCAAAATTAGCATCAGGGAA+TGG | 0.555133 | 1:+78436760 | None:intergenic |
CAGTAAGATTCACACATCAC+AGG | 0.558791 | 1:-78436599 | MsaT005165.1:CDS |
GAAATTAGGTACCCTGGACC+TGG | 0.562470 | 1:-78436196 | MsaT005165.1:CDS |
TTGAATCTGCACCAGGTCCA+GGG | 0.571969 | 1:+78436185 | None:intergenic |
CTACATGCTTCTTGAATCCG+TGG | 0.574833 | 1:-78435766 | MsaT005165.1:intron |
CAAGAAGAAATTAGGTACCC+TGG | 0.600461 | 1:-78436202 | MsaT005165.1:CDS |
AAACTGAGGCTTATGCAAGA+TGG | 0.603501 | 1:-78436099 | MsaT005165.1:CDS |
TGTTGATAGTACTGAAACTG+AGG | 0.605008 | 1:-78436113 | MsaT005165.1:CDS |
CCCAATTTGGAGTTGAACAA+GGG | 0.612112 | 1:+78435831 | None:intergenic |
CACAGGGTTTGAGAGACAGA+AGG | 0.612414 | 1:-78436582 | MsaT005165.1:CDS |
CAACCAGCAGCAGTTATAGG+AGG | 0.626000 | 1:-78436637 | MsaT005165.1:CDS |
AATCTGCAAAATTAGCATCA+GGG | 0.626917 | 1:+78436755 | None:intergenic |
TGTTACAAGATGTGTAGCAG+TGG | 0.627912 | 1:-78436235 | MsaT005165.1:CDS |
ACAGGGTTTGAGAGACAGAA+GGG | 0.629239 | 1:-78436581 | MsaT005165.1:CDS |
GCATGTAGATAGATTCATAG+TGG | 0.634816 | 1:+78435781 | None:intergenic |
AGTAAGATTCACACATCACA+GGG | 0.651645 | 1:-78436598 | MsaT005165.1:CDS |
TGATGTGTTGATGTAGTGAA+AGG | 0.657369 | 1:+78436793 | None:intergenic |
AACCAAGTAACACACTTGAG+TGG | 0.665918 | 1:-78436495 | MsaT005165.1:CDS |
GAAATACCTAGAGATCATGG+TGG | 0.750657 | 1:-78436004 | MsaT005165.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 78433445 | 78436962 | 78433445 | ID=MsaG005165 |
Chr1 | mRNA | 78433445 | 78436962 | 78433445 | ID=MsaT005165.1;Parent=MsaG005165 |
Chr1 | exon | 78433445 | 78433502 | 78433445 | ID=MsaT005165.1.exon2;Parent=MsaT005165.1 |
Chr1 | CDS | 78433445 | 78433502 | 78433445 | ID=cds.MsaT005165.1;Parent=MsaT005165.1 |
Chr1 | exon | 78435767 | 78436962 | 78435767 | ID=MsaT005165.1.exon1;Parent=MsaT005165.1 |
Chr1 | CDS | 78435767 | 78436962 | 78435767 | ID=cds.MsaT005165.1;Parent=MsaT005165.1 |
Gene Sequence |
Protein sequence |