AlfalfaGEDB | MsaG005165

M. sativa ssp. caerulea / MsaG005165

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005165	XP_024630896.1	97.007	401	6	4	1	399	1	397	0.0	797

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005165	sp\|Q9FYG7\|TCP1_ARATH	42.690	171	67	5	110	253	87	253	1.23e-25	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005165	tr\|A0A396K243\|A0A396K243_MEDTR	97.007	401	6	4	1	399	1	397	0.0	797

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005165	TF	TCP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005165	MtrunA17_Chr1g0205131	97.007	401	6	4	1	399	1	397	0.0	797
MsaG005165	MtrunA17_Chr6g0456881	41.250	320	98	13	110	393	126	391	4.06e-47	167
MsaG005165	MtrunA17_Chr7g0220931	36.164	365	155	12	41	393	57	355	2.27e-38	142
MsaG005165	MtrunA17_Chr4g0062691	40.625	160	66	4	96	238	120	267	1.18e-20	93.2
MsaG005165	MtrunA17_Chr8g0376571	35.404	161	69	3	109	236	60	218	2.92e-17	83.6
MsaG005165	MtrunA17_Chr4g0040921	55.738	61	27	0	109	169	21	81	4.71e-17	81.6
MsaG005165	MtrunA17_Chr8g0360441	55.738	61	27	0	109	169	53	113	1.30e-16	81.3
MsaG005165	MtrunA17_Chr2g0316391	57.377	61	26	0	109	169	19	79	1.56e-16	79.7
MsaG005165	MtrunA17_Chr2g0325171	53.333	60	28	0	109	168	23	82	1.91e-16	80.1
MsaG005165	MtrunA17_Chr4g0061561	37.037	108	67	1	109	216	56	162	2.43e-13	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005165	AT1G67260.2	42.690	171	67	5	110	253	87	253	9.91e-27	110
MsaG005165	AT1G67260.3	42.690	171	67	5	110	253	87	253	9.91e-27	110
MsaG005165	AT1G67260.1	42.690	171	67	5	110	253	87	253	1.25e-26	110
MsaG005165	AT1G68800.2	68.182	66	21	0	110	175	112	177	3.48e-21	94.7
MsaG005165	AT1G68800.1	68.182	66	21	0	110	175	112	177	3.68e-21	94.4
MsaG005165	AT3G18550.2	30.043	233	104	8	61	235	66	297	1.23e-18	87.8
MsaG005165	AT3G18550.3	31.034	232	101	8	61	234	66	296	1.73e-18	87.4
MsaG005165	AT3G18550.1	29.958	237	103	9	61	235	66	301	3.14e-18	86.7
MsaG005165	AT3G18550.4	29.958	237	103	9	61	235	66	301	3.14e-18	86.7
MsaG005165	AT4G18390.1	39.850	133	68	2	109	236	41	166	3.44e-18	85.9

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Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGGTTACTACTAT+AGG	0.421997	1:+78436054	None:intergenic
AAACAACCAGCAGCAGTTAT+AGG	0.340022	1:-78436640	MsaT005165.1:CDS
AAACTGAGGCTTATGCAAGA+TGG	0.603501	1:-78436099	MsaT005165.1:CDS
AACCAAGTAACACACTTGAG+TGG	0.665918	1:-78436495	MsaT005165.1:CDS
AAGAAGAGTAGTATTGTTAT+TGG	0.300314	1:+78436837	None:intergenic
AAGAAGATGATGATGAAGAA+GGG	0.474146	1:+78436917	None:intergenic
AATCATTATTATTAATATTG+TGG	0.455465	1:+78435864	None:intergenic
AATCTGCAAAATTAGCATCA+GGG	0.626917	1:+78436755	None:intergenic
AATGTTGGATCAGCAGATAT+AGG	0.432836	1:-78433458	MsaT005165.1:CDS
ACAGGGTTTGAGAGACAGAA+GGG	0.629239	1:-78436581	MsaT005165.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	78433445	78436962	78433445	ID=MsaG005165
Chr1	mRNA	78433445	78436962	78433445	ID=MsaT005165.1;Parent=MsaG005165
Chr1	exon	78433445	78433502	78433445	ID=MsaT005165.1.exon2;Parent=MsaT005165.1
Chr1	CDS	78433445	78433502	78433445	ID=cds.MsaT005165.1;Parent=MsaT005165.1
Chr1	exon	78435767	78436962	78435767	ID=MsaT005165.1.exon1;Parent=MsaT005165.1
Chr1	CDS	78435767	78436962	78435767	ID=cds.MsaT005165.1;Parent=MsaT005165.1

Gene Sequence

>MsaT005165.1

ATGTTCTCTTTCCCTAATAATTTCCCTTCTTCATCATCATCTTCTTCTTACCCTAATAGTACCCTTTCTTTTCTCATTGACAATCCTGAAAATAATGATTTTCCCAATAACAATACTACTCTTCTTGATGATTCACTACTTTCTATTCCTTTCACTACATCAACACATCATGATGTTGTTCCATTCCCTGATGCTAATTTTGCAGATTGTAACAACACTGCAATGTTTGAACAAGATAATGGCTACAACTTTGGTGTTAATAGTAGTTTTCCGATTCCAAATTATGTTGTGACAGAGCAGAAACAACCAGCAGCAGTTATAGGAGGAAAGAAAGATAGGCACAGTAAGATTCACACATCACAGGGTTTGAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCAAGAAAGTTCTTTGATCTTCAAGATATGTTAGAGTTTGACAAACCAAGTAACACACTTGAGTGGCTTTTCACTAAATCTGACACTGCAATCAAAGAACTAGCTAGAACTAAAAACGCTGCTTGTTACAACAACAACGACAACAGCCCATTTTTTGATTCAAATAGCAACAAATCATTTTCCGGCGGTGGTGGCGGAGATGGTAGTTGTTCTTCTAAAGGGAGAAAATTGAAATGGACACAGAAAGAAGAAACAAAAAAAGAGTCAAGAGAAAGAGCAAGAGCAAGAGCTAGAGAAAGGACTTGTTACAAGATGTGTAGCAGTGGAAGAATGCAACAAGAAGAAATTAGGTACCCTGGACCTGGTGCAGATTCAACAAATACTCAACAAATGCTGCAACAATTGATGTCATCTTCAACATCACCTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCAGCTTCTTCAACTTCAGACCTATAGTAGTAACCCTTCTTTTCATAATCATCATAACCTATTGGATAGTGAAATACCTAGAGATCATGGTGGATTTAATGTGATTGAGGAATCCATTATGATTAGAAGGAACATGATGTCTGCTACTTCTTCTCAATATCATCACCAAAACCTAATTCCTACTATCCCTAAGGAATTACCAAGTTTCAACCACAATATTAATAATAATGATTACTCCTTATTCCCTTGTTCAACTCCAAATTGGGAGACTAGCTCCAACTTTTGTGGAATAGCCACTATGAATCTATCTACATGCTTCTTGAATCCGTGGGTTTATTCTACAGAAGAAATGAATGTTGGATCAGCAGATATAGGGATGTTCTGCTAG

Protein sequence

>MsaT005165.1

MFSFPNNFPSSSSSSSYPNSTLSFLIDNPENNDFPNNNTTLLDDSLLSIPFTTSTHHDVVPFPDANFADCNNTAMFEQDNGYNFGVNSSFPIPNYVVTEQKQPAAVIGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNAACYNNNDNSPFFDSNSNKSFSGGGGGDGSCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRMQQEEIRYPGPGADSTNTQQMLQQLMSSSTSPVDSTETEAYARWRQLLQLQTYSSNPSFHNHHNLLDSEIPRDHGGFNVIEESIMIRRNMMSATSSQYHHQNLIPTIPKELPSFNHNINNNDYSLFPCSTPNWETSSNFCGIATMNLSTCFLNPWVYSTEEMNVGSADIGMFC*