AlfalfaGEDB | MsaG005237

M. sativa ssp. caerulea / MsaG005237

KEGG: -
GO: GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010187 GO:0016020 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0097305 GO:1900140 GO:1901700 GO:2000026
PFAM: PF00514.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005237	XP_003592432.1	96.733	704	12	1	1	693	1	704	0.0	1382

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005237	sp\|B9DHT4\|ARIA_ARATH	77.461	701	143	3	4	691	6	704	0.0	1063

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005237	tr\|G7IE13\|G7IE13_MEDTR	96.733	704	12	1	1	693	1	704	0.0	1382

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005237	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005237	MtrunA17_Chr1g0205751	96.733	704	12	1	1	693	1	704	0.0	1382
MsaG005237	MtrunA17_Chr5g0394261	82.684	693	107	2	12	691	7	699	0.0	1130
MsaG005237	MtrunA17_Chr7g0259851	62.463	682	237	5	18	687	11	685	0.0	816
MsaG005237	MtrunA17_Chr7g0259501	31.288	163	92	3	506	653	187	344	1.15e-16	82.8
MsaG005237	MtrunA17_Chr3g0106931	30.978	184	125	2	194	377	549	730	2.67e-15	80.1
MsaG005237	MtrunA17_Chr1g0185861	31.098	164	89	4	508	653	191	348	3.39e-15	78.6
MsaG005237	MtrunA17_Chr1g0152561	25.200	250	168	3	295	525	74	323	6.71e-15	76.6
MsaG005237	MtrunA17_Chr1g0149211	25.193	389	250	14	137	497	104	479	8.11e-14	74.7
MsaG005237	MtrunA17_Chr5g0440341	26.020	196	123	6	513	689	183	375	7.74e-13	70.9
MsaG005237	MtrunA17_Chr4g0031431	30.769	195	131	4	198	391	353	544	4.27e-12	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005237	AT5G19330.1	77.461	701	143	3	4	691	6	704	0.0	1063
MsaG005237	AT5G19330.2	72.387	641	125	8	4	634	6	604	0.0	853
MsaG005237	AT5G13060.1	58.357	694	276	3	5	686	34	726	0.0	800
MsaG005237	AT3G06190.5	32.022	178	99	4	511	670	182	355	1.42e-17	85.5
MsaG005237	AT3G06190.1	32.298	161	88	3	511	653	182	339	8.91e-17	83.6
MsaG005237	AT5G19000.1	29.747	158	96	2	511	653	183	340	2.64e-14	75.9
MsaG005237	AT5G19000.3	29.747	158	96	2	511	653	183	340	2.64e-14	75.9
MsaG005237	AT3G03740.1	30.921	152	88	2	522	657	210	360	4.15e-14	75.9
MsaG005237	AT2G23140.1	29.297	256	176	5	194	448	542	793	9.10e-14	75.5
MsaG005237	AT2G23140.2	29.297	256	176	5	194	448	539	790	9.32e-14	75.5

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Find 142 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCCCATCTAATATT+TGG	0.076983	1:-79349799	None:intergenic
AAACTTCCCATCTAATATTT+GGG	0.326330	1:-79349798	None:intergenic
AAAGCATCTCTATCAAAGGT+CGG	0.649168	1:-79346186	None:intergenic
AAAGGGAGTGCTTTCGCATT+AGG	0.305562	1:+79342878	MsaT005237.1:CDS
AAATGATGAAAATAAAATTC+AGG	0.399085	1:+79345077	MsaT005237.1:CDS
AAATGTCTGCCTTTGCATTG+GGG	0.623106	1:+79346233	MsaT005237.1:CDS
AACCAGTTATTGGATTACTT+AGG	0.550875	1:+79345426	MsaT005237.1:CDS
AAGAAAGAGGTTCTATTTGC+TGG	0.352180	1:+79345395	MsaT005237.1:CDS
AAGATCAACAAGGTGTGTTA+AGG	0.453328	1:-79344762	None:intergenic
AAGGTCACTGCCTCTCCGAG+AGG	0.690613	1:+79342450	MsaT005237.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	79342431	79350890	79342431	ID=MsaG005237
Chr1	mRNA	79342431	79350890	79342431	ID=MsaT005237.1;Parent=MsaG005237
Chr1	exon	79342431	79342677	79342431	ID=MsaT005237.1.exon1;Parent=MsaT005237.1
Chr1	CDS	79342431	79342677	79342431	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79342759	79342916	79342759	ID=MsaT005237.1.exon2;Parent=MsaT005237.1
Chr1	CDS	79342759	79342916	79342759	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79344728	79344900	79344728	ID=MsaT005237.1.exon3;Parent=MsaT005237.1
Chr1	CDS	79344728	79344900	79344728	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79344978	79345098	79344978	ID=MsaT005237.1.exon4;Parent=MsaT005237.1
Chr1	CDS	79344978	79345098	79344978	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79345171	79345245	79345171	ID=MsaT005237.1.exon5;Parent=MsaT005237.1
Chr1	CDS	79345171	79345245	79345171	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79345353	79345447	79345353	ID=MsaT005237.1.exon6;Parent=MsaT005237.1
Chr1	CDS	79345353	79345447	79345353	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79345632	79345707	79345632	ID=MsaT005237.1.exon7;Parent=MsaT005237.1
Chr1	CDS	79345632	79345707	79345632	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79346160	79346267	79346160	ID=MsaT005237.1.exon8;Parent=MsaT005237.1
Chr1	CDS	79346160	79346267	79346160	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79346590	79346718	79346590	ID=MsaT005237.1.exon9;Parent=MsaT005237.1
Chr1	CDS	79346590	79346718	79346590	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79347524	79347592	79347524	ID=MsaT005237.1.exon10;Parent=MsaT005237.1
Chr1	CDS	79347524	79347592	79347524	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79347786	79347845	79347786	ID=MsaT005237.1.exon11;Parent=MsaT005237.1
Chr1	CDS	79347786	79347845	79347786	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79348017	79348107	79348017	ID=MsaT005237.1.exon12;Parent=MsaT005237.1
Chr1	CDS	79348017	79348107	79348017	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79348219	79348358	79348219	ID=MsaT005237.1.exon13;Parent=MsaT005237.1
Chr1	CDS	79348219	79348358	79348219	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79349142	79349205	79349142	ID=MsaT005237.1.exon14;Parent=MsaT005237.1
Chr1	CDS	79349142	79349205	79349142	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79349332	79349411	79349332	ID=MsaT005237.1.exon15;Parent=MsaT005237.1
Chr1	CDS	79349332	79349411	79349332	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79349772	79349836	79349772	ID=MsaT005237.1.exon16;Parent=MsaT005237.1
Chr1	CDS	79349772	79349836	79349772	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79349929	79350046	79349929	ID=MsaT005237.1.exon17;Parent=MsaT005237.1
Chr1	CDS	79349929	79350046	79349929	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79350172	79350296	79350172	ID=MsaT005237.1.exon18;Parent=MsaT005237.1
Chr1	CDS	79350172	79350296	79350172	ID=cds.MsaT005237.1;Parent=MsaT005237.1
Chr1	exon	79350803	79350890	79350803	ID=MsaT005237.1.exon19;Parent=MsaT005237.1
Chr1	CDS	79350803	79350890	79350803	ID=cds.MsaT005237.1;Parent=MsaT005237.1

Gene Sequence

>MsaT005237.1

ATGGAGTTTCAGAGACGCCAAGGTCACTGCCTCTCCGAGAGGAAGGGGCAAAAACGTAAGTTAGACGAAGAATTACCGGAAGACCGTCAGATCTCGTCGGCACCGCCTACCGCCGACGAACGTGCGGCACTTCTCGTCGAAGTTGCTAATCAGGTCACCGTTCTCGAGTCTACTTTCACGTGGAATGAAGACGATCGAGCCGCGGCTAAGCGTGCTACTCATGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAATGTGATTGTGGAAGGAGGTGCGATTCCGGCTTTGATTAAGCATCTTCAAGCACCGCCTGTTACTGATTGCGTTCAGAAGCCGTTGCCGTTTGAGCATGAAGTTGAGAAAGGGAGTGCTTTCGCATTAGGACTTCTCGCAGTCAAGCCGGAACATCAACAACTAATTGTGGACAGTGGTGCCTTAACACACCTTGTTGATCTTTTAAAGAGGCATAATAATGGTTTGACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTGTTACTAATCTCGCACATGAGAATAGCAACATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTGGAATTTGCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACTCTAGCTTTTAAAAATGATGAAAATAAAATTCAGATTGTTGAATGTGATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATCGGAAATCTAGTTCACTCATCTCCGAATATAAAGAAAGAGGTTCTATTTGCTGGTGCTTTACAACCAGTTATTGGATTACTTAGCTCACGCTGCCCTGAAAGTCAGAGGGAAGCGGCATTGTTACTTGGACAGTTTGCAGCTACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTCCTGATGTACAACTTAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGTTTAGTGCCACTTCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGTCGGATTTCATTAGGGTAGGTGGAGTTCAAAGACTACAAGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTTTTCAGAAAGGGGTTTTCAAAGCGAGTGCGTTGGTTCTTGCACATCTTTGCCCTGCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAGTTGCTTATCAGTCTTCTCAGCTCATCCAGCTCCAAACAGCAACTTGATGGTGCTGCAGCTTTATGCAAGTTGGCCAATAAAGCCTCGGCCCTGTCTCCTGTAGACGCCGCTCCTCCTTCTCCAACACCACAGGTTTACTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGCTTTTATGCTCATAGAATTTGTCTACTGGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATATCACTCCAGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGATGGACTGAAGAGACTCTGTGAGTACACAATTGCACAGGATATATTACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCATTATCATTGAGGCATGCATGCATTCTTTTTATCTTGGAGCACTTTGATAAGTTGAGCGCGAGGCCAGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAATGCCAACTCCCATAGACTGTAA

Protein sequence

>MsaT005237.1

MEFQRRQGHCLSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEDDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPVTDCVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHNNGLTSRAINSLIRRAADAVTNLAHENSNIKTHVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKIQIVECDALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLSSRCPESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRFQKGVFKASALVLAHLCPADDQRRIFIEHHGLELLISLLSSSSSKQQLDGAAALCKLANKASALSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDITPDIAQDLLRAADQYLLDGLKRLCEYTIAQDILLENVSSMYELSEAFNALSLRHACILFILEHFDKLSARPGHSLLIQRIIPEIRNYFVKALTNANSHRL*