AlfalfaGEDB | MsaG005244

M. sativa ssp. caerulea / MsaG005244

KEGG: K07560 K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005244	XP_003592443.1	60.294	68	27	0	31	98	1	68	2.34e-18	86.7
MsaG005244	XP_003592443.1	67.308	104	20	1	32	121	73	176	1.50e-36	132

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005244	sp\|O48686\|SNL3_ARATH	43.820	89	49	1	27	114	12	100	3.35e-16	76.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005244	tr\|G7IE24\|G7IE24_MEDTR	60.294	68	27	0	31	98	1	68	1.12e-18	86.7
MsaG005244	tr\|G7IE24\|G7IE24_MEDTR	67.308	104	20	1	32	121	73	176	7.14e-37	132

TFs/TRs:

Gene ID	Type	Classification
MsaG005244	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000352	MsaG005244	0.814974	2.026986e-51	3.915854e-49
MsaG000760	MsaG005244	0.807748	7.386407e-50	1.194765e-47
MsaG002021	MsaG005244	0.802643	8.553351e-49	1.227943e-46
MsaG003423	MsaG005244	0.821470	6.976030e-53	1.595111e-50
MsaG003529	MsaG005244	0.807048	1.037965e-49	1.651117e-47
MsaG003964	MsaG005244	0.820944	9.212222e-53	2.077389e-50
MsaG005244	MsaG005957	0.839987	2.106343e-57	8.219331e-55
MsaG005244	MsaG007526	0.813247	4.857335e-51	8.985072e-49
MsaG005244	MsaG007652	0.806925	1.101548e-49	1.747180e-47
MsaG005244	MsaG007767	0.824036	1.775530e-53	4.350480e-51
MsaG005244	MsaG008069	0.811441	1.198949e-50	2.120807e-48
MsaG005244	MsaG008368	0.803532	5.612035e-49	8.223609e-47
MsaG005244	MsaG011443	0.800778	2.056041e-48	2.829202e-46
MsaG005244	MsaG011586	0.804062	4.360615e-49	6.468996e-47
MsaG005244	MsaG014725	0.830063	6.519316e-55	1.890118e-52
MsaG005244	MsaG015813	0.800890	1.950664e-48	2.690929e-46
MsaG005244	MsaG016078	0.808599	4.875846e-50	8.049737e-48
MsaG005244	MsaG017088	0.839603	2.649526e-57	1.021415e-54
MsaG005244	MsaG017473	0.806451	1.385532e-49	2.173351e-47
MsaG005244	MsaG018212	0.827592	2.565818e-54	6.936763e-52
MsaG005244	MsaG018317	0.817847	4.644015e-52	9.654949e-50
MsaG005244	MsaG018430	0.821289	7.678439e-53	1.747372e-50
MsaG005244	MsaG019159	0.808462	5.213044e-50	8.578327e-48
MsaG005244	MsaG020062	0.827606	2.546059e-54	6.886058e-52
MsaG005244	MsaG020645	0.810918	1.554410e-50	2.714567e-48
MsaG005244	MsaG020787	0.812923	5.715538e-51	1.048752e-48
MsaG005244	MsaG021423	0.804799	3.066503e-49	4.627341e-47
MsaG005244	MsaG022116	0.805944	1.769725e-49	2.742736e-47
MsaG005244	MsaG022494	0.807038	1.042952e-49	1.658672e-47
MsaG005244	MsaG023396	0.817393	5.874141e-52	1.207051e-49
MsaG005244	MsaG023680	0.800685	2.147684e-48	2.949149e-46
MsaG005244	MsaG024036	0.809145	3.729495e-50	6.238972e-48
MsaG005244	MsaG025722	0.823421	2.469214e-53	5.950063e-51
MsaG005244	MsaG027027	0.810498	1.914381e-50	3.309178e-48
MsaG005244	MsaG027749	0.823981	1.828753e-53	4.474057e-51
MsaG005244	MsaG028350	0.805061	2.704963e-49	4.106756e-47
MsaG005244	MsaG029132	0.811672	1.068526e-50	1.900833e-48
MsaG005244	MsaG030267	0.805641	2.047427e-49	3.150702e-47
MsaG005244	MsaG035439	0.801705	1.330869e-48	1.870122e-46
MsaG005244	MsaG040666	0.808454	5.232619e-50	8.608828e-48
MsaG005244	MsaG041926	0.807338	9.016820e-50	1.444237e-47
MsaG005244	MsaG042142	0.821283	7.704406e-53	1.753007e-50
MsaG005244	MsaG044614	0.816160	1.106994e-51	2.203824e-49
MsaG005244	MsaG045113	0.820561	1.127313e-52	2.516416e-50
MsaG005244	MsaG045873	0.820146	1.402153e-52	3.095858e-50
MsaG005244	MsaG046470	0.814158	3.066538e-51	5.803556e-49
MsaG005244	MsaG007871	0.821388	7.287944e-53	1.662834e-50
MsaG005244	MsaG006602	0.807335	9.028019e-50	1.445938e-47
MsaG005244	MsaG016152	0.820152	1.397461e-52	3.086021e-50
MsaG005244	MsaG013115	0.800471	2.373402e-48	3.243287e-46
MsaG005244	MsaG013071	0.801081	1.784338e-48	2.472031e-46
MsaG005244	MsaG023443	0.809810	2.689819e-50	4.572441e-48
MsaG005244	MsaG031626	0.805422	2.275516e-49	3.483694e-47
MsaG005244	MsaG034520	0.809043	3.921350e-50	6.543798e-48
MsaG005244	MsaG031808	0.802828	7.835832e-49	1.129674e-46
MsaG005244	MsaG031699	0.833862	7.589872e-56	2.457268e-53
MsaG005244	MsaG035918	0.801275	1.629082e-48	2.266870e-46
MsaG005244	MsaG047040	0.810175	2.246078e-50	3.851947e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005244	MtrunA17_Chr1g0205831	67.308	104	20	1	32	121	76	179	1.75e-40	132
MsaG005244	MtrunA17_Chr1g0205831	60.294	68	27	0	31	98	4	71	2.71e-22	86.3
MsaG005244	MtrunA17_Chr1g0205811	60.870	92	36	0	29	120	14	105	3.42e-35	117
MsaG005244	MtrunA17_Chr1g0205801	62.366	93	35	0	25	117	8	100	2.03e-34	115
MsaG005244	MtrunA17_Chr1g0205821	64.894	94	32	1	21	114	6	98	4.28e-34	116
MsaG005244	MtrunA17_Chr1g0205821	63.736	91	28	1	21	111	91	176	1.02e-33	115
MsaG005244	MtrunA17_Chr8g0364231	55.696	79	34	1	27	105	40	117	1.25e-21	89.0
MsaG005244	MtrunA17_Chr3g0077911	48.837	86	41	1	29	114	8	90	1.05e-20	81.6
MsaG005244	MtrunA17_Chr3g0077911	49.315	73	36	1	27	98	88	160	1.38e-13	63.2
MsaG005244	MtrunA17_Chr5g0415031	47.500	80	42	0	27	106	41	120	1.38e-19	83.2
MsaG005244	MtrunA17_Chr1g0206781	48.052	77	40	0	30	106	12	88	1.84e-19	77.4
MsaG005244	MtrunA17_Chr3g0077881	47.872	94	43	2	27	114	6	99	4.03e-18	75.5
MsaG005244	MtrunA17_Chr1g0205861	50.000	82	36	1	21	97	3	84	8.68e-18	73.2
MsaG005244	MtrunA17_Chr4g0075861	48.837	86	44	0	29	114	89	174	2.17e-17	76.3
MsaG005244	MtrunA17_Chr4g0075861	50.000	70	35	0	32	101	175	244	3.31e-16	73.2
MsaG005244	MtrunA17_Chr4g0075861	44.211	95	47	3	25	117	8	98	1.23e-12	62.8
MsaG005244	MtrunA17_Chr3g0077861	45.349	86	44	1	29	114	8	90	3.51e-17	72.8
MsaG005244	MtrunA17_Chr3g0077861	48.101	79	38	2	27	102	88	166	6.87e-14	64.3
MsaG005244	MtrunA17_Chr1g0206771	47.368	76	40	0	22	97	88	163	7.83e-17	72.4
MsaG005244	MtrunA17_Chr1g0206771	44.000	75	42	0	27	101	14	88	2.03e-14	65.9
MsaG005244	MtrunA17_Chr4g0075971	50.575	87	41	2	29	114	89	174	9.63e-17	74.7
MsaG005244	MtrunA17_Chr4g0075971	50.000	70	35	0	32	101	175	244	5.85e-16	72.4
MsaG005244	MtrunA17_Chr4g0075971	44.211	95	47	3	25	117	8	98	1.33e-12	63.2
MsaG005244	MtrunA17_Chr6g0452001	46.154	78	42	0	27	104	61	138	3.17e-16	73.6
MsaG005244	MtrunA17_Chr3g0077891	45.745	94	45	2	27	114	6	99	8.05e-16	69.3
MsaG005244	MtrunA17_Chr3g0077891	44.737	76	41	1	29	103	99	174	1.49e-14	66.2
MsaG005244	MtrunA17_Chr3g0077811	48.000	75	38	1	27	100	11	85	2.52e-15	67.0
MsaG005244	MtrunA17_Chr3g0077941	47.312	93	44	2	27	114	6	98	3.42e-15	67.8
MsaG005244	MtrunA17_Chr3g0077941	43.421	76	42	1	29	103	98	173	1.75e-12	60.8
MsaG005244	MtrunA17_Chr6g0452021	42.529	87	47	2	29	114	43	127	5.61e-15	69.7
MsaG005244	MtrunA17_Chr2g0328701	43.820	89	46	2	25	112	25	110	6.67e-14	63.2
MsaG005244	MtrunA17_Chr8g0364021	40.964	83	47	1	28	110	43	123	2.19e-13	64.3
MsaG005244	MtrunA17_Chr7g0218911	47.619	63	33	0	37	99	6	68	2.36e-12	59.3
MsaG005244	MtrunA17_Chr1g0209201	50.000	60	29	1	37	96	24	82	5.39e-12	58.9
MsaG005244	MtrunA17_Chr7g0218891	42.667	75	41	1	27	99	11	85	6.08e-12	60.5
MsaG005244	MtrunA17_Chr7g0218891	35.556	90	53	1	15	104	178	262	6.94e-11	57.8
MsaG005244	MtrunA17_Chr5g0431721	53.125	64	27	2	33	93	16	79	1.30e-11	57.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005244	AT1G24200.1	51.429	70	34	0	28	97	13	82	6.14e-18	75.9
MsaG005244	AT1G24190.3	43.820	89	49	1	27	114	12	100	3.27e-17	76.6
MsaG005244	AT1G24190.2	43.820	89	49	1	27	114	12	100	3.40e-17	76.6
MsaG005244	AT1G24190.1	43.820	89	49	1	27	114	12	100	3.40e-17	76.6
MsaG005244	AT1G70060.2	47.436	78	41	0	27	104	12	89	5.47e-17	75.9
MsaG005244	AT1G70060.1	47.436	78	41	0	27	104	12	89	5.47e-17	75.9
MsaG005244	AT3G01320.1	48.611	72	37	0	27	98	55	126	2.09e-16	74.3
MsaG005244	AT3G01320.2	48.611	72	37	0	27	98	55	126	2.20e-16	74.3
MsaG005244	AT1G10450.2	45.055	91	48	2	24	114	29	117	3.43e-16	73.6
MsaG005244	AT1G10450.1	45.055	91	48	2	24	114	29	117	3.43e-16	73.6
MsaG005244	AT1G10450.3	45.055	91	48	2	24	114	80	168	3.44e-16	73.6
MsaG005244	AT5G15020.1	45.833	72	39	0	27	98	50	121	3.42e-15	70.9
MsaG005244	AT5G15020.2	45.833	72	39	0	27	98	50	121	3.62e-15	70.9
MsaG005244	AT1G59890.3	47.143	70	37	0	29	98	45	114	5.89e-15	70.1
MsaG005244	AT1G59890.2	47.143	70	37	0	29	98	45	114	5.95e-15	70.1
MsaG005244	AT1G59890.1	47.143	70	37	0	29	98	45	114	6.07e-15	70.1
MsaG005244	AT1G59890.4	47.143	70	37	0	29	98	45	114	6.37e-15	70.1
MsaG005244	AT5G35610.1	47.500	80	39	1	37	116	18	94	1.57e-14	65.9
MsaG005244	AT5G15040.1	42.857	70	40	0	29	98	3	72	1.76e-13	61.6
MsaG005244	AT5G15040.3	42.857	70	40	0	29	98	3	72	1.76e-13	61.6
MsaG005244	AT5G15040.2	42.857	70	40	0	29	98	3	72	1.76e-13	61.6
MsaG005244	AT1G27220.1	39.726	73	44	0	25	97	10	82	4.62e-13	62.8
MsaG005244	AT1G70030.3	44.286	70	39	0	29	98	22	91	4.64e-13	61.6
MsaG005244	AT1G70030.2	44.286	70	39	0	29	98	22	91	9.91e-13	60.8
MsaG005244	AT1G70030.1	43.836	73	41	0	29	101	11	83	1.19e-12	61.2
MsaG005244	AT1G23810.1	38.947	95	56	2	14	108	95	187	8.36e-12	60.1
MsaG005244	AT1G24230.1	47.222	72	36	2	23	92	7	78	1.25e-11	59.7
MsaG005244	AT1G24250.1	43.902	82	45	1	27	108	118	198	1.30e-11	59.7
MsaG005244	AT1G27260.1	41.667	72	42	0	27	98	1	72	1.33e-11	59.3
MsaG005244	AT5G15025.1	38.889	72	44	0	27	98	45	116	2.85e-11	56.6
MsaG005244	AT1G24210.1	48.571	70	35	1	23	91	7	76	3.01e-11	57.4
MsaG005244	AT1G27250.1	38.889	72	44	0	25	96	17	88	4.83e-11	56.6

Find 20 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCTTATATCAATTCTTT+TGG	0.302742	1:-79406658	None:intergenic
AGAGCATCAAGATTTACTTT+TGG	0.331136	1:+79406710	MsaT005244.1:CDS
AAGTTGCATTTCAAAATAAG+AGG	0.445054	1:+79406592	MsaT005244.1:CDS
AGTTGTCAAAGAAGGAGTGA+TGG	0.486303	1:+79406677	MsaT005244.1:CDS
TGAAATCTCATTTCCATTGG+AGG	0.501735	1:+79406481	MsaT005244.1:CDS
TGAGTGCTGGTCCATCTTTG+AGG	0.502051	1:-79406536	None:intergenic
ACATGAAATCTCATTTCCAT+TGG	0.503318	1:+79406478	None:intergenic
CTCAACACTTTCTTGCCAGC+GGG	0.511799	1:+79406735	MsaT005244.1:CDS
GATATAAGAGTTGTCAAAGA+AGG	0.512296	1:+79406669	MsaT005244.1:CDS
ACACGAAATCTCACTTCCAT+TGG	0.519367	1:+79406758	MsaT005244.1:CDS
AGGTGATAGATTAACATTCA+AGG	0.536491	1:+79406797	MsaT005244.1:CDS
GATCAGTGCATCCTCAAAGA+TGG	0.538557	1:+79406525	MsaT005244.1:CDS
AGTGAGATTTCGTGTCCCGC+TGG	0.542973	1:-79406750	None:intergenic
ATTGCTTCATCTATGAGTGC+TGG	0.548558	1:-79406549	None:intergenic
AGTTGCATTTCAAAATAAGA+GGG	0.555199	1:+79406593	MsaT005244.1:CDS
TGTTGTTCATCACTATCCAA+TGG	0.563918	1:-79406774	None:intergenic
GATGATCAACAACGATGTGA+TGG	0.569542	1:+79406503	MsaT005244.1:CDS
CGTTGTTGATCATCCTCCAA+TGG	0.597089	1:-79406494	None:intergenic
ACTCAACACTTTCTTGCCAG+CGG	0.612834	1:+79406734	MsaT005244.1:CDS
TTGGATAGTGATGAACAACA+AGG	0.741257	1:+79406777	MsaT005244.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	79406480	79406845	79406480	ID=MsaG005244
Chr1	mRNA	79406480	79406845	79406480	ID=MsaT005244.1;Parent=MsaG005244
Chr1	exon	79406480	79406845	79406480	ID=MsaT005244.1.exon1;Parent=MsaT005244.1
Chr1	CDS	79406480	79406845	79406480	ID=cds.MsaT005244.1;Parent=MsaT005244.1

Gene Sequence	>MsaT005244.1 ATGAAATCTCATTTCCATTGGAGGATGATCAACAACGATGTGATGGATCAGTGCATCCTCAAAGATGGACCAGCACTCATAGATGAAGCAATGTCGCTTGTAACAGCAGTTAAAGTTGCATTTCAAAATAAGAGGGAAAAGTATGATGAATTCTTGAAACTCCTAGTTGATTACAATGCCAAAAGAATTGATATAAGAGTTGTCAAAGAAGGAGTGATGGAGTTGTTTAAAGAGCATCAAGATTTACTTTTGGGACTCAACACTTTCTTGCCAGCGGGACACGAAATCTCACTTCCATTGGATAGTGATGAACAACAAGGTGATAGATTAACATTCAAGGATGAACAGAAAGATGATGAGCAATAA
Protein sequence	>MsaT005244.1 MKSHFHWRMINNDVMDQCILKDGPALIDEAMSLVTAVKVAFQNKREKYDEFLKLLVDYNAKRIDIRVVKEGVMELFKEHQDLLLGLNTFLPAGHEISLPLDSDEQQGDRLTFKDEQKDDEQ*