AlfalfaGEDB | MsaG005245

M. sativa ssp. caerulea / MsaG005245

KEGG: K07560 K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005245	XP_003592441.1	53.608	97	44	1	175	271	3	98	1.51e-20	97.1
MsaG005245	XP_003592441.1	72.892	166	45	0	94	259	8	173	5.32e-76	239
MsaG005245	XP_003592441.1	87.006	177	23	0	1	177	1	177	1.53e-103	309

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005245	sp\|O04539\|SNL4_ARATH	39.610	154	92	1	10	162	11	164	1.77e-24	106
MsaG005245	sp\|O04539\|SNL4_ARATH	34.868	152	98	1	98	248	13	164	1.13e-21	98.2
MsaG005245	sp\|O04539\|SNL4_ARATH	45.070	71	39	0	184	254	13	83	2.39e-11	67.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005245	tr\|G7IE22\|G7IE22_MEDTR	53.608	97	44	1	175	271	3	98	7.19e-21	97.1
MsaG005245	tr\|G7IE22\|G7IE22_MEDTR	72.892	166	45	0	94	259	8	173	2.54e-76	239
MsaG005245	tr\|G7IE22\|G7IE22_MEDTR	87.006	177	23	0	1	177	1	177	7.29e-104	309

TFs/TRs:

Gene ID	Type	Classification
MsaG005245	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004137	MsaG005245	0.805063	2.703307e-49	4.104345e-47
MsaG005245	MsaG005329	0.800912	1.930962e-48	2.665006e-46
MsaG005245	MsaG006452	0.813097	5.237787e-51	9.652695e-49
MsaG005245	MsaG008356	0.808119	6.165026e-50	1.006147e-47
MsaG005245	MsaG009657	0.812413	7.379860e-51	1.337061e-48
MsaG005245	MsaG018202	0.828370	1.670646e-54	4.616511e-52
MsaG005245	MsaG018961	0.808060	6.345291e-50	1.034087e-47
MsaG005245	MsaG020334	0.822075	5.063868e-53	1.176666e-50
MsaG005245	MsaG021488	0.818137	3.996436e-52	8.371172e-50
MsaG005245	MsaG021775	0.803487	5.732528e-49	8.391354e-47
MsaG005245	MsaG022345	0.822868	3.319112e-53	7.879442e-51
MsaG005245	MsaG023762	0.805409	2.289524e-49	3.504104e-47
MsaG005245	MsaG032221	0.819115	2.404452e-52	5.166472e-50
MsaG005245	MsaG040669	0.801193	1.692583e-48	2.350946e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005245	MtrunA17_Chr1g0205821	87.006	177	23	0	1	177	1	177	1.40e-107	309
MsaG005245	MtrunA17_Chr1g0205821	72.892	166	45	0	94	259	8	173	4.90e-80	239
MsaG005245	MtrunA17_Chr1g0205821	53.608	97	44	1	175	271	3	98	1.39e-24	97.1
MsaG005245	MtrunA17_Chr1g0205831	64.198	162	43	1	17	178	6	152	8.01e-65	201
MsaG005245	MtrunA17_Chr1g0205831	55.440	193	58	2	99	278	2	179	1.33e-62	195
MsaG005245	MtrunA17_Chr1g0205831	62.338	77	29	0	16	92	76	152	1.85e-23	94.4
MsaG005245	MtrunA17_Chr4g0075861	43.580	257	132	4	1	257	1	244	2.57e-57	187
MsaG005245	MtrunA17_Chr4g0075861	42.515	167	87	2	96	262	9	166	8.26e-32	120
MsaG005245	MtrunA17_Chr4g0075971	43.411	258	131	6	1	257	1	244	6.40e-53	181
MsaG005245	MtrunA17_Chr4g0075971	42.857	168	85	4	96	262	9	166	3.18e-29	116
MsaG005245	MtrunA17_Chr7g0218891	31.203	266	173	5	1	260	1	262	4.62e-36	129
MsaG005245	MtrunA17_Chr1g0206771	37.647	170	99	1	84	253	1	163	3.08e-35	125
MsaG005245	MtrunA17_Chr1g0206771	40.964	166	91	1	2	167	5	163	1.56e-34	123
MsaG005245	MtrunA17_Chr3g0077911	48.276	145	73	2	21	164	13	156	4.44e-34	121
MsaG005245	MtrunA17_Chr3g0077911	42.038	157	86	3	99	254	8	160	7.93e-31	112
MsaG005245	MtrunA17_Chr3g0077911	44.318	88	45	2	185	272	8	91	3.25e-14	68.9
MsaG005245	MtrunA17_Chr3g0077891	43.195	169	90	3	11	173	6	174	3.97e-33	119
MsaG005245	MtrunA17_Chr3g0077891	38.922	167	96	3	99	259	8	174	1.38e-27	105
MsaG005245	MtrunA17_Chr1g0205801	61.702	94	36	0	6	99	5	98	4.73e-32	114
MsaG005245	MtrunA17_Chr1g0205801	56.322	87	38	0	99	185	12	98	2.61e-25	97.1
MsaG005245	MtrunA17_Chr1g0205801	52.222	90	42	1	185	274	12	100	7.79e-23	90.5
MsaG005245	MtrunA17_Chr3g0077941	42.941	170	88	4	11	173	6	173	5.84e-32	116
MsaG005245	MtrunA17_Chr3g0077941	38.554	166	97	3	99	259	8	173	1.31e-25	99.8
MsaG005245	MtrunA17_Chr3g0077861	46.853	143	74	2	23	164	15	156	1.22e-31	115
MsaG005245	MtrunA17_Chr3g0077861	39.490	157	90	3	99	254	8	160	1.68e-27	104
MsaG005245	MtrunA17_Chr3g0077881	42.771	166	88	4	11	170	6	170	3.09e-31	114
MsaG005245	MtrunA17_Chr3g0077881	40.244	164	91	4	99	256	8	170	1.30e-27	105
MsaG005245	MtrunA17_Chr5g0415031	40.260	154	92	0	10	163	40	193	3.17e-31	122
MsaG005245	MtrunA17_Chr5g0415031	36.184	152	97	0	98	249	42	193	6.96e-29	115
MsaG005245	MtrunA17_Chr5g0415031	42.697	89	51	0	184	272	42	130	3.76e-16	78.6
MsaG005245	MtrunA17_Chr1g0205811	57.000	100	42	1	1	99	1	100	3.82e-30	110
MsaG005245	MtrunA17_Chr1g0205811	53.684	95	43	1	183	277	12	105	2.73e-26	100
MsaG005245	MtrunA17_Chr1g0205811	52.809	89	42	0	97	185	12	100	3.67e-26	99.8
MsaG005245	MtrunA17_Chr8g0364231	40.909	154	89	2	10	162	39	191	8.25e-28	112
MsaG005245	MtrunA17_Chr8g0364231	36.424	151	96	0	98	248	41	191	1.29e-25	106
MsaG005245	MtrunA17_Chr8g0364231	47.436	78	40	1	184	261	41	117	6.16e-16	77.8
MsaG005245	MtrunA17_Chr6g0452021	37.748	151	92	2	13	163	43	191	1.83e-24	102
MsaG005245	MtrunA17_Chr6g0452021	35.099	151	96	2	99	249	43	191	1.84e-23	99.4
MsaG005245	MtrunA17_Chr6g0452001	36.364	154	98	0	10	163	60	213	7.16e-24	101
MsaG005245	MtrunA17_Chr6g0452001	32.895	152	102	0	98	249	62	213	1.19e-21	94.7
MsaG005245	MtrunA17_Chr6g0452001	37.079	89	56	0	184	272	62	150	7.18e-12	65.9
MsaG005245	MtrunA17_Chr1g0209201	40.625	128	66	3	7	134	10	127	2.81e-20	84.7
MsaG005245	MtrunA17_Chr1g0209201	36.842	133	74	3	88	220	5	127	1.05e-17	77.8
MsaG005245	MtrunA17_Chr1g0206781	36.364	121	51	1	100	220	12	106	6.60e-19	80.5
MsaG005245	MtrunA17_Chr1g0206781	46.250	80	43	0	186	265	12	91	1.16e-18	79.7
MsaG005245	MtrunA17_Chr1g0206781	37.190	121	50	1	14	134	12	106	3.63e-17	75.9
MsaG005245	MtrunA17_Chr2g0328701	41.284	109	55	2	96	204	26	125	2.20e-17	76.6
MsaG005245	MtrunA17_Chr2g0328701	42.017	119	57	4	1	118	18	125	6.10e-16	72.8
MsaG005245	MtrunA17_Chr2g0328701	36.782	87	52	1	181	267	25	108	3.18e-11	59.7
MsaG005245	MtrunA17_Chr1g0205861	50.000	70	35	0	98	167	15	84	1.47e-15	71.2
MsaG005245	MtrunA17_Chr1g0205861	48.611	72	37	0	10	81	13	84	4.94e-14	67.4
MsaG005245	MtrunA17_Chr1g0205861	42.353	85	46	1	184	268	15	96	5.64e-14	67.0
MsaG005245	MtrunA17_Chr8g0364021	39.583	96	56	1	89	184	34	127	1.57e-14	71.2
MsaG005245	MtrunA17_Chr8g0364021	41.758	91	51	1	12	102	43	131	9.20e-14	69.3
MsaG005245	MtrunA17_Chr8g0364021	33.607	122	73	2	141	262	6	119	2.76e-13	67.8
MsaG005245	MtrunA17_Chr3g0077811	51.724	58	28	0	27	84	28	85	3.89e-12	62.0
MsaG005245	MtrunA17_Chr7g0256011	47.761	67	35	0	11	77	14	80	1.46e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005245	AT1G24230.1	30.800	250	145	7	10	251	11	240	8.28e-28	107
MsaG005245	AT1G24230.1	36.196	163	88	2	98	259	13	160	1.82e-25	101
MsaG005245	AT1G27260.1	38.889	180	102	3	98	272	2	178	3.79e-26	102
MsaG005245	AT1G27260.1	35.577	208	129	3	11	214	1	207	1.88e-24	98.2
MsaG005245	AT1G70060.2	39.610	154	92	1	10	162	11	164	1.80e-25	106
MsaG005245	AT1G70060.2	34.868	152	98	1	98	248	13	164	1.15e-22	98.2
MsaG005245	AT1G70060.2	45.070	71	39	0	184	254	13	83	2.43e-12	67.4
MsaG005245	AT1G70060.1	39.610	154	92	1	10	162	11	164	1.80e-25	106
MsaG005245	AT1G70060.1	34.868	152	98	1	98	248	13	164	1.15e-22	98.2
MsaG005245	AT1G70060.1	45.070	71	39	0	184	254	13	83	2.43e-12	67.4
MsaG005245	AT5G15020.2	38.065	155	92	2	10	163	49	200	4.20e-25	105
MsaG005245	AT5G15020.2	34.641	153	96	2	98	249	51	200	5.62e-23	99.0
MsaG005245	AT5G15020.2	40.845	71	42	0	184	254	51	121	4.58e-11	63.5
MsaG005245	AT5G15020.1	38.065	155	92	2	10	163	49	200	4.85e-25	105
MsaG005245	AT5G15020.1	34.641	153	96	2	98	249	51	200	6.67e-23	99.0
MsaG005245	AT5G15020.1	40.845	71	42	0	184	254	51	121	5.17e-11	63.5
MsaG005245	AT3G01320.2	36.875	160	98	2	4	161	46	204	9.31e-24	101
MsaG005245	AT3G01320.2	34.810	158	98	2	98	255	56	208	2.57e-22	97.1
MsaG005245	AT3G01320.1	36.875	160	98	2	4	161	46	204	9.41e-24	101
MsaG005245	AT3G01320.1	34.810	158	98	2	98	255	56	208	2.63e-22	97.1
MsaG005245	AT1G24190.3	37.349	166	93	3	10	169	11	171	1.39e-23	100
MsaG005245	AT1G24190.3	32.075	159	107	1	98	255	13	171	1.57e-21	94.7
MsaG005245	AT1G24190.3	43.421	76	42	1	184	258	13	88	2.24e-12	67.8
MsaG005245	AT1G24190.2	37.349	166	93	3	10	169	11	171	1.46e-23	100
MsaG005245	AT1G24190.2	32.075	159	107	1	98	255	13	171	1.60e-21	94.7
MsaG005245	AT1G24190.2	43.421	76	42	1	184	258	13	88	2.34e-12	67.4
MsaG005245	AT1G24190.1	37.349	166	93	3	10	169	11	171	1.46e-23	100
MsaG005245	AT1G24190.1	33.750	160	103	3	98	255	13	171	1.69e-21	94.7
MsaG005245	AT1G24190.1	43.421	76	42	1	184	258	13	88	2.41e-12	67.4
MsaG005245	AT1G24250.1	30.317	221	133	4	11	211	12	231	2.49e-23	96.3
MsaG005245	AT1G24250.1	33.166	199	110	6	94	272	10	205	2.33e-20	88.2
MsaG005245	AT1G24250.1	46.377	69	37	0	6	74	113	181	6.59e-11	61.6
MsaG005245	AT1G24200.1	35.065	154	95	2	95	247	10	159	4.26e-23	94.0
MsaG005245	AT1G24200.1	37.013	154	92	2	9	161	10	159	3.01e-22	91.7
MsaG005245	AT1G24200.1	41.429	70	41	0	184	253	13	82	5.58e-12	63.9
MsaG005245	AT1G10450.2	37.255	153	94	2	95	247	29	179	1.55e-22	97.8
MsaG005245	AT1G10450.2	34.031	191	109	4	9	184	29	217	1.08e-21	95.1
MsaG005245	AT1G10450.2	45.714	70	38	0	185	254	33	102	4.54e-12	66.6
MsaG005245	AT1G10450.1	37.255	153	94	2	95	247	29	179	1.55e-22	97.8
MsaG005245	AT1G10450.1	34.031	191	109	4	9	184	29	217	1.08e-21	95.1
MsaG005245	AT1G10450.1	45.714	70	38	0	185	254	33	102	4.54e-12	66.6
MsaG005245	AT1G10450.3	37.255	153	94	2	95	247	80	230	1.65e-22	97.8
MsaG005245	AT1G10450.3	34.031	191	109	4	9	184	80	268	1.09e-21	95.1
MsaG005245	AT1G10450.3	45.714	70	38	0	185	254	84	153	5.02e-12	66.6
MsaG005245	AT1G23810.1	29.224	219	145	4	2	211	3	220	1.84e-22	93.6
MsaG005245	AT1G23810.1	34.574	188	111	5	94	272	10	194	2.70e-21	90.5
MsaG005245	AT1G70030.1	37.584	149	91	2	13	161	11	157	2.19e-21	88.6
MsaG005245	AT1G70030.1	35.570	149	94	2	99	247	11	157	5.86e-20	84.7
MsaG005245	AT1G59890.2	35.329	167	103	3	13	178	45	207	3.94e-21	93.6
MsaG005245	AT1G59890.2	33.333	153	94	2	99	248	45	192	1.32e-18	86.3
MsaG005245	AT1G59890.2	45.714	70	38	0	185	254	45	114	3.91e-12	67.0
MsaG005245	AT1G59890.4	35.329	167	103	3	13	178	45	207	4.31e-21	93.6
MsaG005245	AT1G59890.4	33.333	153	94	2	99	248	45	192	1.42e-18	85.9
MsaG005245	AT1G59890.4	45.714	70	38	0	185	254	45	114	3.97e-12	67.0
MsaG005245	AT1G59890.3	35.329	167	103	3	13	178	45	207	4.44e-21	93.6
MsaG005245	AT1G59890.3	33.333	153	94	2	99	248	45	192	1.47e-18	85.9
MsaG005245	AT1G59890.3	45.714	70	38	0	185	254	45	114	4.09e-12	67.0
MsaG005245	AT1G59890.1	35.329	167	103	3	13	178	45	207	4.53e-21	93.6
MsaG005245	AT1G59890.1	33.333	153	94	2	99	248	45	192	1.43e-18	85.9
MsaG005245	AT1G59890.1	45.714	70	38	0	185	254	45	114	4.01e-12	67.0
MsaG005245	AT1G27280.1	32.500	200	126	5	21	214	1	197	6.32e-19	83.6
MsaG005245	AT1G27280.1	33.571	140	91	1	110	247	4	143	9.92e-14	69.3
MsaG005245	AT1G27270.1	34.568	162	93	2	98	246	13	174	2.40e-15	73.9
MsaG005245	AT1G27270.1	35.802	162	91	3	12	160	13	174	2.87e-15	73.9
MsaG005245	AT1G70030.2	38.136	118	70	2	99	214	22	138	5.49e-15	70.9
MsaG005245	AT1G70030.2	40.000	115	63	2	13	122	22	135	2.86e-14	68.9
MsaG005245	AT1G27220.1	33.945	109	65	1	9	117	10	111	8.07e-15	71.6
MsaG005245	AT1G70030.3	42.268	97	55	1	13	109	22	117	6.36e-14	67.4
MsaG005245	AT1G70030.3	40.206	97	57	1	99	195	22	117	1.16e-13	66.6
MsaG005245	AT5G15040.1	44.156	77	41	1	99	175	3	77	6.98e-14	66.2
MsaG005245	AT5G15040.1	42.857	77	42	1	13	89	3	77	2.16e-13	65.1
MsaG005245	AT5G15040.1	42.857	70	40	0	185	254	3	72	2.55e-12	62.0
MsaG005245	AT5G15040.3	44.156	77	41	1	99	175	3	77	6.98e-14	66.2
MsaG005245	AT5G15040.3	42.857	77	42	1	13	89	3	77	2.16e-13	65.1
MsaG005245	AT5G15040.3	42.857	70	40	0	185	254	3	72	2.55e-12	62.0
MsaG005245	AT5G15040.2	44.156	77	41	1	99	175	3	77	6.98e-14	66.2
MsaG005245	AT5G15040.2	42.857	77	42	1	13	89	3	77	2.16e-13	65.1
MsaG005245	AT5G15040.2	42.857	70	40	0	185	254	3	72	2.55e-12	62.0
MsaG005245	AT1G24210.1	45.333	75	39	1	4	76	3	77	3.71e-13	66.2
MsaG005245	AT5G15025.1	40.741	81	48	0	2	82	36	116	5.52e-13	64.7
MsaG005245	AT1G27250.1	44.928	69	38	0	12	80	20	88	5.58e-12	62.4

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCTTACATCAAGTCTTT+TGG	0.279157	1:-79409642	None:intergenic
AACTCTTACATCAATTCTTT+TGG	0.285232	1:-79409384	None:intergenic
GACTCTTCTATCAATTCTTT+TGG	0.310378	1:-79409126	None:intergenic
GTGAAACTCCTACAAGATTT+CGG	0.391833	1:+79409101	MsaT005245.1:CDS
GGTTACATTTGAAGATAAGA+TGG	0.406022	1:+79409319	MsaT005245.1:CDS
GGTTACATTTAAAGATAAGA+TGG	0.406022	1:+79409577	MsaT005245.1:CDS
AGTTATGAAAGAAGGAATGA+TGG	0.450472	1:+79409661	MsaT005245.1:CDS
CGATGCAAGGGCGTTTGTAA+AGG	0.450885	1:+79409031	MsaT005245.1:CDS
AAGCTGTGTTTCAAGATAAG+AGG	0.458098	1:+79409060	MsaT005245.1:CDS
ATGAACAGCTCAAGAAGAAC+AGG	0.465556	1:+79408996	MsaT005245.1:CDS
AGTCGTCAAAGAAGGAGTTA+TGG	0.477577	1:+79409145	MsaT005245.1:CDS
AGTTGTCAAAGAAGGAATGA+TGG	0.479247	1:+79409403	MsaT005245.1:CDS
GGCAAGAAGATGTTGAATCT+TGG	0.485703	1:-79409197	None:intergenic
GGCAAGAAGGTGTTGAATCC+CGG	0.486543	1:-79409455	None:intergenic
ACATGAAATCTCACTTCCAT+TGG	0.500530	1:+79409226	MsaT005245.1:CDS
ACACAAAATCTCAATTCCAT+TGG	0.505572	1:+79409484	MsaT005245.1:CDS
GATAGAAGAGTCGTCAAAGA+AGG	0.515587	1:+79409137	MsaT005245.1:CDS
TTCAACATCTTCTTGCCACC+AGG	0.516818	1:+79409203	MsaT005245.1:CDS
ACACAAAATCTCACTTCCAT+TGG	0.521284	1:+79409742	MsaT005245.1:CDS
CGCCCTTGCATCGTCAATCA+CGG	0.521774	1:-79409021	None:intergenic
GATGTAAGAGTTGTCAAAGA+AGG	0.540360	1:+79409395	MsaT005245.1:CDS
GATGTAAGAGTTATGAAAGA+AGG	0.540360	1:+79409653	MsaT005245.1:CDS
AGATAAGATGGAAATGTTCG+AGG	0.540381	1:+79409589	MsaT005245.1:CDS
AGCTGTGTTTCAAGATAAGA+GGG	0.542710	1:+79409061	MsaT005245.1:CDS
GTCCCGTGATTGACGATGCA+AGG	0.545886	1:+79409018	MsaT005245.1:CDS
GATGAACAACAAGATGAAGA+TGG	0.553215	1:+79409770	MsaT005245.1:CDS
TGTTGTTCATCACCATCCAA+TGG	0.554632	1:-79409758	None:intergenic
TTTGTGTCCCTCTGGCAAGA+AGG	0.563533	1:-79409468	None:intergenic
TTTGTGTCCCTCTGGCAAGA+AGG	0.563533	1:-79409726	None:intergenic
GCCCTTGCATCGTCAATCAC+GGG	0.577829	1:-79409020	None:intergenic
TCCCGTGATTGACGATGCAA+GGG	0.580973	1:+79409019	MsaT005245.1:CDS
TTCAACACCTTCTTGCCAGA+GGG	0.592249	1:+79409461	MsaT005245.1:CDS
TTCAACACCTTCTTGCCAGA+GGG	0.592249	1:+79409719	MsaT005245.1:CDS
AAAATCTCACTTCCATTGGA+TGG	0.592611	1:+79409746	MsaT005245.1:CDS
TGTTGTAAATCATCATCCAA+TGG	0.600709	1:-79409500	None:intergenic
ACCGCTCGAAGATGAAGCAA+TGG	0.613500	1:+79409277	MsaT005245.1:CDS
GAGTTGAAAGATGCACAGAA+AGG	0.613537	1:+79409797	MsaT005245.1:CDS
GGAAGTGAGATTTCATGTCC+TGG	0.614261	1:-79409221	None:intergenic
ACCATTGCTTCATCTTCGAG+CGG	0.637751	1:-79409278	None:intergenic
TGTTGTAGATCATCATCCAA+TGG	0.641812	1:-79409242	None:intergenic
ATTCAACACCTTCTTGCCAG+AGG	0.655191	1:+79409460	MsaT005245.1:CDS
ATTCAACACCTTCTTGCCAG+AGG	0.655191	1:+79409718	MsaT005245.1:CDS
AGTGAGATTTCATGTCCTGG+TGG	0.759321	1:-79409218	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	79408996	79409832	79408996	ID=MsaG005245
Chr1	mRNA	79408996	79409832	79408996	ID=MsaT005245.1;Parent=MsaG005245
Chr1	exon	79408996	79409832	79408996	ID=MsaT005245.1.exon1;Parent=MsaT005245.1
Chr1	CDS	79408996	79409832	79408996	ID=cds.MsaT005245.1;Parent=MsaT005245.1

Gene Sequence

>MsaT005245.1

ATGAACAGCTCAAGAAGAACAGGTCCCGTGATTGACGATGCAAGGGCGTTTGTAAAGGACGTAGAAGCTGTGTTTCAAGATAAGAGGGAAAAGTATGATGAATTCGTGAAACTCCTACAAGATTTCGGCGCCAAAAGAATTGATAGAAGAGTCGTCAAAGAAGGAGTTATGGAGTTGTTTAAAGATCATCAAGATTTACTTCCAAGATTCAACATCTTCTTGCCACCAGGACATGAAATCTCACTTCCATTGGATGATGATCTACAACAACATGATCGATCACCGCTCGAAGATGAAGCAATGGTGTTTTTAACAGCAGTTAAGGTTACATTTGAAGATAAGATGGAAAAGTTCAATGAATTCTTGAAACTCCTAGCTGATTACCGTGCCAAAAGAATTGATGTAAGAGTTGTCAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAAATTTACTTCCGGGATTCAACACCTTCTTGCCAGAGGGACACAAAATCTCAATTCCATTGGATGATGATTTACAACAACGTGATCGATCAGCACTCGAAGATGAAGCAACAGCATTTTTAACAGCAGTTAAGGTTACATTTAAAGATAAGATGGAAATGTTCGAGGAATTCTTGAAACTCCTAGCTGATTACCATGCCAAAAGACTTGATGTAAGAGTTATGAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAAATTTACTTTTGGGATTCAACACCTTCTTGCCAGAGGGACACAAAATCTCACTTCCATTGGATGGTGATGAACAACAAGATGAAGATGGATCAGAGTTGAAAGATGCACAGAAAGGTGATGAACAATAA

Protein sequence

>MsaT005245.1

MNSSRRTGPVIDDARAFVKDVEAVFQDKREKYDEFVKLLQDFGAKRIDRRVVKEGVMELFKDHQDLLPRFNIFLPPGHEISLPLDDDLQQHDRSPLEDEAMVFLTAVKVTFEDKMEKFNEFLKLLADYRAKRIDVRVVKEGMMELFKDHKNLLPGFNTFLPEGHKISIPLDDDLQQRDRSALEDEATAFLTAVKVTFKDKMEMFEEFLKLLADYHAKRLDVRVMKEGMMELFKDHKNLLLGFNTFLPEGHKISLPLDGDEQQDEDGSELKDAQKGDEQ*