AlfalfaGEDB | MsaG005248

M. sativa ssp. caerulea / MsaG005248

KEGG: K07560 K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005248	XP_003592441.1	53.608	97	44	1	175	271	3	98	1.60e-20	97.1
MsaG005248	XP_003592441.1	72.892	166	45	0	94	259	8	173	5.56e-76	239
MsaG005248	XP_003592441.1	86.441	177	24	0	1	177	1	177	5.37e-103	308

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005248	sp\|O04539\|SNL4_ARATH	39.610	154	92	1	10	162	11	164	3.25e-24	105
MsaG005248	sp\|O04539\|SNL4_ARATH	34.868	152	98	1	98	248	13	164	1.21e-21	98.2
MsaG005248	sp\|O04539\|SNL4_ARATH	45.070	71	39	0	184	254	13	83	2.55e-11	67.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005248	tr\|G7IE22\|G7IE22_MEDTR	53.608	97	44	1	175	271	3	98	7.66e-21	97.1
MsaG005248	tr\|G7IE22\|G7IE22_MEDTR	72.892	166	45	0	94	259	8	173	2.66e-76	239
MsaG005248	tr\|G7IE22\|G7IE22_MEDTR	86.441	177	24	0	1	177	1	177	2.57e-103	308

TFs/TRs:

Gene ID	Type	Classification
MsaG005248	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000033	MsaG005248	0.866516	5.406877e-65	5.428492e-62
MsaG000609	MsaG005248	0.825436	8.334367e-54	2.121744e-51
MsaG000680	MsaG005248	0.808342	5.528217e-50	9.070572e-48
MsaG000707	MsaG005248	0.805793	1.902994e-49	2.938831e-47
MsaG001029	MsaG005248	0.839051	3.678859e-57	1.394183e-54
MsaG000977	MsaG005248	0.834448	5.419812e-56	1.785765e-53
MsaG001479	MsaG005248	0.824467	1.407167e-53	3.488599e-51
MsaG002379	MsaG005248	0.810925	1.549223e-50	2.705975e-48
MsaG003555	MsaG005248	0.804033	4.422107e-49	6.555783e-47
MsaG003648	MsaG005248	0.848929	8.494504e-60	4.438796e-57
MsaG004006	MsaG005248	0.804341	3.817968e-49	5.700570e-47
MsaG004556	MsaG005248	0.826742	4.089195e-54	1.079563e-51
MsaG005248	MsaG005283	0.854713	1.979283e-61	1.265604e-58
MsaG005248	MsaG005410	0.802329	9.922011e-49	1.414246e-46
MsaG005248	MsaG005510	0.835070	3.786039e-56	1.270857e-53
MsaG005248	MsaG005683	0.800105	2.815316e-48	3.815453e-46
MsaG005248	MsaG006020	0.828402	1.641402e-54	4.539638e-52
MsaG005248	MsaG005958	0.835621	2.752698e-56	9.393467e-54
MsaG005248	MsaG005960	0.820884	9.508560e-53	2.140742e-50
MsaG005248	MsaG006255	0.873600	2.671380e-67	3.612329e-64
MsaG005248	MsaG006274	0.828392	1.650705e-54	4.564105e-52
MsaG005248	MsaG006283	0.842238	5.431533e-58	2.275793e-55
MsaG005248	MsaG006351	0.813928	3.444574e-51	6.481788e-49
MsaG005248	MsaG006397	0.818180	3.910045e-52	8.199071e-50
MsaG005248	MsaG006452	0.826440	4.825131e-54	1.263220e-51
MsaG005248	MsaG006774	0.801178	1.704965e-48	2.367293e-46
MsaG005248	MsaG006783	0.826117	5.755443e-54	1.493253e-51
MsaG005248	MsaG007145	0.813028	5.422565e-51	9.976143e-49
MsaG005248	MsaG007168	0.823180	2.809873e-53	6.726738e-51
MsaG005248	MsaG007914	0.804476	3.579055e-49	5.360430e-47
MsaG005248	MsaG008221	0.829363	9.633240e-55	2.737412e-52
MsaG005248	MsaG009657	0.813279	4.777985e-51	8.845327e-49
MsaG005248	MsaG010066	0.812442	7.274642e-51	1.318960e-48
MsaG005248	MsaG010394	0.811074	1.438686e-50	2.522149e-48
MsaG005248	MsaG011070	0.815773	1.349364e-51	2.659886e-49
MsaG005248	MsaG011366	0.810414	1.995897e-50	3.443101e-48
MsaG005248	MsaG011472	0.862090	1.282134e-63	1.079764e-60
MsaG005248	MsaG011889	0.844125	1.715395e-58	7.637757e-56
MsaG005248	MsaG012015	0.856986	4.315773e-62	2.996801e-59
MsaG005248	MsaG012308	0.823431	2.455733e-53	5.919163e-51
MsaG005248	MsaG014075	0.815429	1.608099e-51	3.142538e-49
MsaG005248	MsaG016293	0.818060	4.161123e-52	8.698539e-50
MsaG005248	MsaG017081	0.834770	4.502423e-56	1.497862e-53
MsaG005248	MsaG017128	0.812197	8.221616e-51	1.481575e-48
MsaG005248	MsaG017287	0.826665	4.267266e-54	1.124115e-51
MsaG005248	MsaG017324	0.807311	9.135092e-50	1.462234e-47
MsaG005248	MsaG017635	0.820027	1.492326e-52	3.284546e-50
MsaG005248	MsaG018046	0.805560	2.129530e-49	3.270631e-47
MsaG005248	MsaG018202	0.802394	9.621547e-49	1.373462e-46
MsaG005248	MsaG018223	0.823166	2.829936e-53	6.772253e-51
MsaG005248	MsaG018481	0.809879	2.599875e-50	4.426849e-48
MsaG005248	MsaG018701	0.800663	2.169598e-48	2.977747e-46
MsaG005248	MsaG018961	0.802434	9.443322e-49	1.349220e-46
MsaG005248	MsaG019267	0.806484	1.363466e-49	2.140398e-47
MsaG005248	MsaG019409	0.819366	2.108519e-52	4.560663e-50
MsaG005248	MsaG019526	0.857773	2.532114e-62	1.810625e-59
MsaG005248	MsaG019615	0.810156	2.267439e-50	3.886820e-48
MsaG005248	MsaG019638	0.806382	1.432943e-49	2.243972e-47
MsaG005248	MsaG019911	0.853440	4.589026e-61	2.804264e-58
MsaG005248	MsaG019910	0.821004	8.925013e-53	2.015844e-50
MsaG005248	MsaG019924	0.839624	2.615458e-57	1.009003e-54
MsaG005248	MsaG020024	0.833950	7.214004e-56	2.341719e-53
MsaG005248	MsaG020371	0.901696	4.781245e-78	2.702610e-74
MsaG005248	MsaG020415	0.813008	5.475026e-51	1.006765e-48
MsaG005248	MsaG020733	0.804317	3.862249e-49	5.763426e-47
MsaG005248	MsaG022486	0.815138	1.865210e-51	3.618075e-49
MsaG005248	MsaG023275	0.832745	1.435963e-55	4.499386e-53
MsaG005248	MsaG023343	0.856648	5.423193e-62	3.720116e-59
MsaG005248	MsaG023563	0.824089	1.724916e-53	4.232604e-51
MsaG005248	MsaG024010	0.836017	2.187143e-56	7.552696e-54
MsaG005248	MsaG024037	0.864320	2.637246e-64	2.424992e-61
MsaG005248	MsaG027092	0.804828	3.025523e-49	4.568577e-47
MsaG005248	MsaG027750	0.846468	4.013108e-59	1.930346e-56
MsaG005248	MsaG027881	0.851013	2.233146e-60	1.253301e-57
MsaG005248	MsaG028001	0.813562	4.144670e-51	7.727704e-49
MsaG005248	MsaG028335	0.802583	8.799880e-49	1.261613e-46
MsaG005248	MsaG028450	0.831980	2.216894e-55	6.793580e-53
MsaG005248	MsaG028658	0.858762	1.289817e-62	9.569092e-60
MsaG005248	MsaG028855	0.803551	5.561165e-49	8.152747e-47
MsaG005248	MsaG028911	0.815899	1.264905e-51	2.501492e-49
MsaG005248	MsaG029335	0.817204	6.475692e-52	1.324218e-49
MsaG005248	MsaG029473	0.852179	1.047703e-60	6.124408e-58
MsaG005248	MsaG029889	0.814214	2.981806e-51	5.651200e-49
MsaG005248	MsaG030359	0.803857	4.809461e-49	7.100541e-47
MsaG005248	MsaG031043	0.824042	1.769441e-53	4.336383e-51
MsaG005248	MsaG031427	0.827706	2.410194e-54	6.536781e-52
MsaG005248	MsaG032146	0.815804	1.328391e-51	2.620667e-49
MsaG005248	MsaG032221	0.809322	3.420103e-50	5.745338e-48
MsaG005248	MsaG034074	0.800454	2.392677e-48	3.268357e-46
MsaG005248	MsaG034337	0.843189	3.045133e-58	1.315454e-55
MsaG005248	MsaG034975	0.810751	1.689009e-50	2.937617e-48
MsaG005248	MsaG039489	0.806202	1.562656e-49	2.436751e-47
MsaG005248	MsaG039902	0.805703	1.987910e-49	3.063491e-47
MsaG005248	MsaG040425	0.824820	1.163271e-53	2.911815e-51
MsaG005248	MsaG041237	0.801997	1.160394e-48	1.641398e-46
MsaG005248	MsaG041800	0.802991	7.254922e-49	1.049897e-46
MsaG005248	MsaG045238	0.836621	1.538025e-56	5.408532e-54
MsaG005248	MsaG046244	0.849644	5.386008e-60	2.884087e-57
MsaG005248	MsaG046266	0.844303	1.537852e-58	6.886932e-56
MsaG005248	MsaG046367	0.837768	7.851061e-57	2.859008e-54
MsaG005248	MsaG046861	0.838028	6.739007e-57	2.473672e-54
MsaG005248	MsaG001257	0.819093	2.431835e-52	5.222272e-50
MsaG005248	MsaG001786	0.806293	1.495715e-49	2.337394e-47
MsaG005248	MsaG009508	0.823264	2.685939e-53	6.444865e-51
MsaG005248	MsaG009512	0.805087	2.672032e-49	4.059124e-47
MsaG005248	MsaG012695	0.816760	8.135209e-52	1.644652e-49
MsaG005248	MsaG023179	0.838808	4.248506e-57	1.597879e-54
MsaG005248	MsaG026803	0.805257	2.462891e-49	3.756168e-47
MsaG005248	MsaG027575	0.848508	1.110375e-59	5.719178e-57
MsaG005248	MsaG028944	0.822573	3.884834e-53	9.148875e-51
MsaG005248	MsaG030863	0.828932	1.223683e-54	3.434812e-52
MsaG005248	MsaG032525	0.807517	8.266102e-50	1.329676e-47
MsaG005248	MsaG032799	0.812278	7.897046e-51	1.425928e-48
MsaG005248	MsaG034348	0.805931	1.780652e-49	2.758835e-47
MsaG005248	MsaG030744	0.806401	1.419292e-49	2.223629e-47
MsaG005248	MsaG040848	0.813643	3.977284e-51	7.430669e-49
MsaG005248	MsaG036760	0.802163	1.073047e-48	1.523607e-46
MsaG005248	MsaG037161	0.819522	1.944048e-52	4.221846e-50
MsaG005248	MsaG035294	0.822061	5.101805e-53	1.185054e-50
MsaG005248	MsaG036542	0.800768	2.065893e-48	2.842104e-46
MsaG005248	MsaG038588	0.825691	7.254694e-54	1.860056e-51
MsaG005248	MsaG043366	0.828158	1.878322e-54	5.159296e-52
MsaG005248	MsaG044531	0.824854	1.141785e-53	2.860743e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005248	MtrunA17_Chr1g0205821	86.441	177	24	0	1	177	1	177	4.94e-107	308
MsaG005248	MtrunA17_Chr1g0205821	72.892	166	45	0	94	259	8	173	5.12e-80	239
MsaG005248	MtrunA17_Chr1g0205821	53.608	97	44	1	175	271	3	98	1.48e-24	97.1
MsaG005248	MtrunA17_Chr1g0205831	64.198	162	43	1	17	178	6	152	1.51e-64	200
MsaG005248	MtrunA17_Chr1g0205831	55.440	193	58	2	99	278	2	179	1.39e-62	195
MsaG005248	MtrunA17_Chr1g0205831	62.338	77	29	0	16	92	76	152	3.19e-23	93.6
MsaG005248	MtrunA17_Chr4g0075861	43.580	257	132	4	1	257	1	244	4.35e-57	187
MsaG005248	MtrunA17_Chr4g0075861	42.515	167	87	2	96	262	9	166	8.97e-32	120
MsaG005248	MtrunA17_Chr4g0075971	43.411	258	131	6	1	257	1	244	1.10e-52	181
MsaG005248	MtrunA17_Chr4g0075971	42.857	168	85	4	96	262	9	166	3.24e-29	116
MsaG005248	MtrunA17_Chr7g0218891	31.203	266	173	5	1	260	1	262	8.44e-36	129
MsaG005248	MtrunA17_Chr1g0206771	37.647	170	99	1	84	253	1	163	3.18e-35	125
MsaG005248	MtrunA17_Chr1g0206771	40.964	166	91	1	2	167	5	163	2.34e-34	122
MsaG005248	MtrunA17_Chr3g0077911	48.276	145	73	2	21	164	13	156	4.58e-34	121
MsaG005248	MtrunA17_Chr3g0077911	42.038	157	86	3	99	254	8	160	8.18e-31	112
MsaG005248	MtrunA17_Chr3g0077911	44.318	88	45	2	185	272	8	91	3.28e-14	68.9
MsaG005248	MtrunA17_Chr3g0077891	43.195	169	90	3	11	173	6	174	6.69e-33	119
MsaG005248	MtrunA17_Chr3g0077891	38.922	167	96	3	99	259	8	174	1.52e-27	104
MsaG005248	MtrunA17_Chr1g0205801	61.702	94	36	0	6	99	5	98	8.42e-32	114
MsaG005248	MtrunA17_Chr1g0205801	56.322	87	38	0	99	185	12	98	2.85e-25	97.1
MsaG005248	MtrunA17_Chr1g0205801	52.222	90	42	1	185	274	12	100	8.30e-23	90.5
MsaG005248	MtrunA17_Chr3g0077941	42.941	170	88	4	11	173	6	173	8.66e-32	115
MsaG005248	MtrunA17_Chr3g0077941	38.554	166	97	3	99	259	8	173	1.32e-25	99.8
MsaG005248	MtrunA17_Chr3g0077861	46.853	143	74	2	23	164	15	156	1.25e-31	115
MsaG005248	MtrunA17_Chr3g0077861	39.490	157	90	3	99	254	8	160	1.73e-27	104
MsaG005248	MtrunA17_Chr3g0077861	49.315	73	36	1	11	82	88	160	2.54e-11	60.8
MsaG005248	MtrunA17_Chr5g0415031	40.260	154	92	0	10	163	40	193	4.68e-31	122
MsaG005248	MtrunA17_Chr5g0415031	36.184	152	97	0	98	249	42	193	6.76e-29	115
MsaG005248	MtrunA17_Chr5g0415031	42.697	89	51	0	184	272	42	130	3.66e-16	78.6
MsaG005248	MtrunA17_Chr3g0077881	42.771	166	88	4	11	170	6	170	5.72e-31	114
MsaG005248	MtrunA17_Chr3g0077881	40.244	164	91	4	99	256	8	170	1.40e-27	105
MsaG005248	MtrunA17_Chr1g0205811	57.000	100	42	1	1	99	1	100	5.55e-30	109
MsaG005248	MtrunA17_Chr1g0205811	53.684	95	43	1	183	277	12	105	2.62e-26	100
MsaG005248	MtrunA17_Chr1g0205811	52.809	89	42	0	97	185	12	100	3.45e-26	99.8
MsaG005248	MtrunA17_Chr8g0364231	40.909	154	89	2	10	162	39	191	1.28e-27	112
MsaG005248	MtrunA17_Chr8g0364231	36.424	151	96	0	98	248	41	191	1.27e-25	106
MsaG005248	MtrunA17_Chr8g0364231	47.436	78	40	1	184	261	41	117	6.28e-16	77.8
MsaG005248	MtrunA17_Chr6g0452021	37.748	151	92	2	13	163	43	191	2.84e-24	101
MsaG005248	MtrunA17_Chr6g0452021	35.099	151	96	2	99	249	43	191	1.81e-23	99.4
MsaG005248	MtrunA17_Chr6g0452001	36.364	154	98	0	10	163	60	213	1.23e-23	100
MsaG005248	MtrunA17_Chr6g0452001	32.895	152	102	0	98	249	62	213	1.26e-21	94.7
MsaG005248	MtrunA17_Chr6g0452001	37.079	89	56	0	184	272	62	150	7.31e-12	65.9
MsaG005248	MtrunA17_Chr1g0209201	40.625	128	66	3	7	134	10	127	4.59e-20	84.3
MsaG005248	MtrunA17_Chr1g0209201	36.842	133	74	3	88	220	5	127	1.04e-17	77.8
MsaG005248	MtrunA17_Chr1g0209201	34.483	87	52	2	166	252	1	82	9.72e-11	58.9
MsaG005248	MtrunA17_Chr1g0206781	36.364	121	51	1	100	220	12	106	7.56e-19	80.1
MsaG005248	MtrunA17_Chr1g0206781	46.250	80	43	0	186	265	12	91	1.28e-18	79.7
MsaG005248	MtrunA17_Chr1g0206781	37.190	121	50	1	14	134	12	106	6.28e-17	75.1
MsaG005248	MtrunA17_Chr2g0328701	41.284	109	55	2	96	204	26	125	2.24e-17	76.6
MsaG005248	MtrunA17_Chr2g0328701	42.017	119	57	4	1	118	18	125	1.22e-15	71.6
MsaG005248	MtrunA17_Chr2g0328701	36.782	87	52	1	181	267	25	108	3.31e-11	59.7
MsaG005248	MtrunA17_Chr1g0205861	50.000	70	35	0	98	167	15	84	1.52e-15	71.2
MsaG005248	MtrunA17_Chr1g0205861	42.353	85	46	1	184	268	15	96	5.70e-14	67.0
MsaG005248	MtrunA17_Chr1g0205861	48.611	72	37	0	10	81	13	84	8.73e-14	66.6
MsaG005248	MtrunA17_Chr8g0364021	39.583	96	56	1	89	184	34	127	1.74e-14	71.2
MsaG005248	MtrunA17_Chr8g0364021	41.758	91	51	1	12	102	43	131	1.40e-13	68.6
MsaG005248	MtrunA17_Chr8g0364021	33.607	122	73	2	141	262	6	119	2.90e-13	67.8
MsaG005248	MtrunA17_Chr3g0077811	51.724	58	28	0	27	84	28	85	3.85e-12	62.0
MsaG005248	MtrunA17_Chr7g0256011	46.269	67	36	0	11	77	14	80	4.10e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005248	AT1G24230.1	30.400	250	146	7	10	251	11	240	1.49e-27	107
MsaG005248	AT1G24230.1	36.196	163	88	2	98	259	13	160	1.90e-25	101
MsaG005248	AT1G27260.1	38.889	180	102	3	98	272	2	178	4.44e-26	102
MsaG005248	AT1G27260.1	35.577	208	129	3	11	214	1	207	3.44e-24	97.8
MsaG005248	AT1G70060.2	39.610	154	92	1	10	162	11	164	3.30e-25	105
MsaG005248	AT1G70060.2	34.868	152	98	1	98	248	13	164	1.23e-22	98.2
MsaG005248	AT1G70060.2	45.070	71	39	0	184	254	13	83	2.59e-12	67.4
MsaG005248	AT1G70060.1	39.610	154	92	1	10	162	11	164	3.30e-25	105
MsaG005248	AT1G70060.1	34.868	152	98	1	98	248	13	164	1.23e-22	98.2
MsaG005248	AT1G70060.1	45.070	71	39	0	184	254	13	83	2.59e-12	67.4
MsaG005248	AT5G15020.2	38.065	155	92	2	10	163	49	200	6.37e-25	104
MsaG005248	AT5G15020.2	34.641	153	96	2	98	249	51	200	5.56e-23	99.0
MsaG005248	AT5G15020.2	40.845	71	42	0	184	254	51	121	4.79e-11	63.5
MsaG005248	AT5G15020.1	38.065	155	92	2	10	163	49	200	7.72e-25	104
MsaG005248	AT5G15020.1	34.641	153	96	2	98	249	51	200	6.92e-23	98.6
MsaG005248	AT5G15020.1	40.845	71	42	0	184	254	51	121	5.36e-11	63.5
MsaG005248	AT3G01320.1	36.875	160	98	2	4	161	46	204	1.31e-23	100
MsaG005248	AT3G01320.1	34.810	158	98	2	98	255	56	208	2.53e-22	97.1
MsaG005248	AT3G01320.2	36.875	160	98	2	4	161	46	204	1.36e-23	100
MsaG005248	AT3G01320.2	34.810	158	98	2	98	255	56	208	2.57e-22	97.1
MsaG005248	AT1G24190.2	37.349	166	93	3	10	169	11	171	2.32e-23	100
MsaG005248	AT1G24190.2	32.075	159	107	1	98	255	13	171	1.56e-21	94.7
MsaG005248	AT1G24190.2	43.421	76	42	1	184	258	13	88	2.30e-12	67.8
MsaG005248	AT1G24190.1	37.349	166	93	3	10	169	11	171	2.34e-23	100
MsaG005248	AT1G24190.1	32.075	159	107	1	98	255	13	171	1.65e-21	94.7
MsaG005248	AT1G24190.1	43.421	76	42	1	184	258	13	88	2.36e-12	67.4
MsaG005248	AT1G24190.3	37.349	166	93	3	10	169	11	171	2.35e-23	100
MsaG005248	AT1G24190.3	32.075	159	107	1	98	255	13	171	1.59e-21	94.7
MsaG005248	AT1G24190.3	43.421	76	42	1	184	258	13	88	2.26e-12	67.8
MsaG005248	AT1G24200.1	35.065	154	95	2	95	247	10	159	4.68e-23	94.0
MsaG005248	AT1G24200.1	37.013	154	92	2	9	161	10	159	5.12e-22	91.3
MsaG005248	AT1G24200.1	41.429	70	41	0	184	253	13	82	5.75e-12	63.9
MsaG005248	AT1G24250.1	29.864	221	134	4	11	211	12	231	7.65e-23	94.7
MsaG005248	AT1G24250.1	33.166	199	110	6	94	272	10	205	2.37e-20	88.2
MsaG005248	AT1G24250.1	46.377	69	37	0	6	74	113	181	9.66e-11	61.2
MsaG005248	AT1G10450.2	37.255	153	94	2	95	247	29	179	1.65e-22	97.4
MsaG005248	AT1G10450.2	34.031	191	109	4	9	184	29	217	1.85e-21	94.4
MsaG005248	AT1G10450.2	45.714	70	38	0	185	254	33	102	4.75e-12	66.6
MsaG005248	AT1G10450.1	37.255	153	94	2	95	247	29	179	1.65e-22	97.4
MsaG005248	AT1G10450.1	34.031	191	109	4	9	184	29	217	1.85e-21	94.4
MsaG005248	AT1G10450.1	45.714	70	38	0	185	254	33	102	4.75e-12	66.6
MsaG005248	AT1G10450.3	37.255	153	94	2	95	247	80	230	1.67e-22	97.4
MsaG005248	AT1G10450.3	34.031	191	109	4	9	184	80	268	1.55e-21	94.7
MsaG005248	AT1G10450.3	45.714	70	38	0	185	254	84	153	5.20e-12	66.6
MsaG005248	AT1G23810.1	29.224	219	145	4	2	211	3	220	2.56e-22	93.2
MsaG005248	AT1G23810.1	34.574	188	111	5	94	272	10	194	2.62e-21	90.5
MsaG005248	AT1G70030.1	37.584	149	91	2	13	161	11	157	3.81e-21	87.8
MsaG005248	AT1G70030.1	35.570	149	94	2	99	247	11	157	6.37e-20	84.7
MsaG005248	AT1G59890.2	35.329	167	103	3	13	178	45	207	6.93e-21	92.8
MsaG005248	AT1G59890.2	33.333	153	94	2	99	248	45	192	1.58e-18	85.9
MsaG005248	AT1G59890.2	45.714	70	38	0	185	254	45	114	4.37e-12	66.6
MsaG005248	AT1G59890.4	35.329	167	103	3	13	178	45	207	7.04e-21	92.8
MsaG005248	AT1G59890.4	33.333	153	94	2	99	248	45	192	1.53e-18	85.9
MsaG005248	AT1G59890.4	45.714	70	38	0	185	254	45	114	4.35e-12	66.6
MsaG005248	AT1G59890.1	35.329	167	103	3	13	178	45	207	7.26e-21	92.8
MsaG005248	AT1G59890.1	33.333	153	94	2	99	248	45	192	1.60e-18	85.9
MsaG005248	AT1G59890.1	45.714	70	38	0	185	254	45	114	4.44e-12	66.6
MsaG005248	AT1G59890.3	35.329	167	103	3	13	178	45	207	7.39e-21	92.8
MsaG005248	AT1G59890.3	33.333	153	94	2	99	248	45	192	1.60e-18	85.9
MsaG005248	AT1G59890.3	45.714	70	38	0	185	254	45	114	4.44e-12	66.6
MsaG005248	AT1G27280.1	32.000	200	127	5	21	214	1	197	1.90e-18	82.4
MsaG005248	AT1G27280.1	33.571	140	91	1	110	247	4	143	1.06e-13	69.3
MsaG005248	AT1G27270.1	34.568	162	93	2	98	246	13	174	2.40e-15	73.9
MsaG005248	AT1G27270.1	35.802	162	91	3	12	160	13	174	4.14e-15	73.6
MsaG005248	AT1G70030.2	38.136	118	70	2	99	214	22	138	5.96e-15	70.9
MsaG005248	AT1G70030.2	40.000	115	63	2	13	122	22	135	4.84e-14	68.2
MsaG005248	AT1G27220.1	33.945	109	65	1	9	117	10	111	1.35e-14	70.9
MsaG005248	AT5G15040.1	44.156	77	41	1	99	175	3	77	7.20e-14	66.2
MsaG005248	AT5G15040.1	42.857	77	42	1	13	89	3	77	3.64e-13	64.3
MsaG005248	AT5G15040.1	42.857	70	40	0	185	254	3	72	2.61e-12	62.0
MsaG005248	AT5G15040.3	44.156	77	41	1	99	175	3	77	7.20e-14	66.2
MsaG005248	AT5G15040.3	42.857	77	42	1	13	89	3	77	3.64e-13	64.3
MsaG005248	AT5G15040.3	42.857	70	40	0	185	254	3	72	2.61e-12	62.0
MsaG005248	AT5G15040.2	44.156	77	41	1	99	175	3	77	7.20e-14	66.2
MsaG005248	AT5G15040.2	42.857	77	42	1	13	89	3	77	3.64e-13	64.3
MsaG005248	AT5G15040.2	42.857	70	40	0	185	254	3	72	2.61e-12	62.0
MsaG005248	AT1G70030.3	42.268	97	55	1	13	109	22	117	1.16e-13	66.6
MsaG005248	AT1G70030.3	40.206	97	57	1	99	195	22	117	1.24e-13	66.6
MsaG005248	AT1G24210.1	45.333	75	39	1	4	76	3	77	6.07e-13	65.5
MsaG005248	AT5G15025.1	40.741	81	48	0	2	82	36	116	1.04e-12	63.9
MsaG005248	AT1G27250.1	44.928	69	38	0	12	80	20	88	1.01e-11	61.6

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCTTACATCAAGTCTTT+TGG	0.279157	1:-79426940	None:intergenic
AACTCTTACATCAATTCTTT+TGG	0.285232	1:-79426682	None:intergenic
GACTCTTCTATCAATTCTTT+TGG	0.310378	1:-79426424	None:intergenic
GTGAAACTCCTACAAGATTT+CGG	0.391833	1:+79426399	MsaT005248.1:CDS
GGTTACATTTGAAGATAAGA+TGG	0.406022	1:+79426617	MsaT005248.1:CDS
GGTTACATTTAAAGATAAGA+TGG	0.406022	1:+79426875	MsaT005248.1:CDS
AGTTATGAAAGAAGGAATGA+TGG	0.450472	1:+79426959	MsaT005248.1:CDS
CGATGCAAGGGCGTTTGTAA+AGG	0.450885	1:+79426329	MsaT005248.1:CDS
ATGCTGTGTTTCAAGATAAG+AGG	0.464716	1:+79426358	MsaT005248.1:CDS
ATGAACAGCTCAAGAAGAAC+AGG	0.465556	1:+79426294	MsaT005248.1:CDS
AGTCGTCAAAGAAGGAGTTA+TGG	0.477577	1:+79426443	MsaT005248.1:CDS
AGTTGTCAAAGAAGGAATGA+TGG	0.479247	1:+79426701	MsaT005248.1:CDS
GGCAAGAAGATGTTGAATCT+TGG	0.485703	1:-79426495	None:intergenic
GGCAAGAAGGTGTTGAATCC+CGG	0.486543	1:-79426753	None:intergenic
ACATGAAATCTCACTTCCAT+TGG	0.500530	1:+79426524	MsaT005248.1:CDS
ACACAAAATCTCAATTCCAT+TGG	0.505572	1:+79426782	MsaT005248.1:CDS
GATAGAAGAGTCGTCAAAGA+AGG	0.515587	1:+79426435	MsaT005248.1:CDS
TTCAACATCTTCTTGCCACC+AGG	0.516818	1:+79426501	MsaT005248.1:CDS
ACACAAAATCTCACTTCCAT+TGG	0.521284	1:+79427040	MsaT005248.1:CDS
CGCCCTTGCATCGTCAATCA+CGG	0.521774	1:-79426319	None:intergenic
TGCTGTGTTTCAAGATAAGA+GGG	0.528588	1:+79426359	MsaT005248.1:CDS
GATGTAAGAGTTGTCAAAGA+AGG	0.540360	1:+79426693	MsaT005248.1:CDS
GATGTAAGAGTTATGAAAGA+AGG	0.540360	1:+79426951	MsaT005248.1:CDS
AGATAAGATGGAAATGTTCG+AGG	0.540381	1:+79426887	MsaT005248.1:CDS
GTCCCGTGATTGACGATGCA+AGG	0.545886	1:+79426316	MsaT005248.1:CDS
GATGAACAACAAGATGAAGA+TGG	0.553215	1:+79427068	MsaT005248.1:CDS
TGTTGTTCATCACCATCCAA+TGG	0.554632	1:-79427056	None:intergenic
TTTGTGTCCCTCTGGCAAGA+AGG	0.563533	1:-79426766	None:intergenic
TTTGTGTCCCTCTGGCAAGA+AGG	0.563533	1:-79427024	None:intergenic
GCCCTTGCATCGTCAATCAC+GGG	0.577829	1:-79426318	None:intergenic
TCCCGTGATTGACGATGCAA+GGG	0.580973	1:+79426317	MsaT005248.1:CDS
TTCAACACCTTCTTGCCAGA+GGG	0.592249	1:+79426759	MsaT005248.1:CDS
TTCAACACCTTCTTGCCAGA+GGG	0.592249	1:+79427017	MsaT005248.1:CDS
AAAATCTCACTTCCATTGGA+TGG	0.592611	1:+79427044	MsaT005248.1:CDS
TGTTGTAAATCATCATCCAA+TGG	0.600709	1:-79426798	None:intergenic
ACCGCTCGAAGATGAAGCAA+TGG	0.613500	1:+79426575	MsaT005248.1:CDS
GAGTTGAAAGATGCACAGAA+AGG	0.613537	1:+79427095	MsaT005248.1:CDS
GGAAGTGAGATTTCATGTCC+TGG	0.614261	1:-79426519	None:intergenic
ACCATTGCTTCATCTTCGAG+CGG	0.637751	1:-79426576	None:intergenic
TGTTGTAGATCATCATCCAA+TGG	0.641812	1:-79426540	None:intergenic
ATTCAACACCTTCTTGCCAG+AGG	0.655191	1:+79426758	MsaT005248.1:CDS
ATTCAACACCTTCTTGCCAG+AGG	0.655191	1:+79427016	MsaT005248.1:CDS
AGTGAGATTTCATGTCCTGG+TGG	0.759321	1:-79426516	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	79426294	79427130	79426294	ID=MsaG005248
Chr1	mRNA	79426294	79427130	79426294	ID=MsaT005248.1;Parent=MsaG005248
Chr1	exon	79426294	79427130	79426294	ID=MsaT005248.1.exon1;Parent=MsaT005248.1
Chr1	CDS	79426294	79427130	79426294	ID=cds.MsaT005248.1;Parent=MsaT005248.1

Gene Sequence

>MsaT005248.1

ATGAACAGCTCAAGAAGAACAGGTCCCGTGATTGACGATGCAAGGGCGTTTGTAAAGGACGTAGATGCTGTGTTTCAAGATAAGAGGGAAAAGTATGATGAATTCGTGAAACTCCTACAAGATTTCGGCGCCAAAAGAATTGATAGAAGAGTCGTCAAAGAAGGAGTTATGGAGTTGTTTAAAGATCATCAAGATTTACTTCCAAGATTCAACATCTTCTTGCCACCAGGACATGAAATCTCACTTCCATTGGATGATGATCTACAACAACATGATCGATCACCGCTCGAAGATGAAGCAATGGTGTTTTTAACAGCAGTTAAGGTTACATTTGAAGATAAGATGGAAAAGTTCAATGAATTCTTGAAACTCCTAGCTGATTACCGTGCCAAAAGAATTGATGTAAGAGTTGTCAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAAATTTACTTCCGGGATTCAACACCTTCTTGCCAGAGGGACACAAAATCTCAATTCCATTGGATGATGATTTACAACAACGTGATCGATCAGCACTCGAAGATGAAGCAACAGCATTTTTAACAGCAGTTAAGGTTACATTTAAAGATAAGATGGAAATGTTCGAGGAATTCTTGAAACTCCTAGCTGATTACCATGCCAAAAGACTTGATGTAAGAGTTATGAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAAATTTACTTTTGGGATTCAACACCTTCTTGCCAGAGGGACACAAAATCTCACTTCCATTGGATGGTGATGAACAACAAGATGAAGATGGATCAGAGTTGAAAGATGCACAGAAAGGTGATGAACAATAA

Protein sequence

>MsaT005248.1

MNSSRRTGPVIDDARAFVKDVDAVFQDKREKYDEFVKLLQDFGAKRIDRRVVKEGVMELFKDHQDLLPRFNIFLPPGHEISLPLDDDLQQHDRSPLEDEAMVFLTAVKVTFEDKMEKFNEFLKLLADYRAKRIDVRVVKEGMMELFKDHKNLLPGFNTFLPEGHKISIPLDDDLQQRDRSALEDEATAFLTAVKVTFKDKMEMFEEFLKLLADYHAKRLDVRVMKEGMMELFKDHKNLLLGFNTFLPEGHKISLPLDGDEQQDEDGSELKDAQKGDEQ*