AlfalfaGEDB | MsaG005251

M. sativa ssp. caerulea / MsaG005251

KEGG: K07560 K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005251	AES62696.1	49.505	101	51	0	3	103	2	102	4.35e-24	100

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005251	sp\|Q9SRH9\|SNL1_ARATH	36.782	87	55	0	13	99	53	139	7.87e-12	65.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005251	tr\|G7IE26\|G7IE26_MEDTR	49.505	101	51	0	3	103	2	102	2.08e-24	100

TFs/TRs:

Gene ID	Type	Classification
MsaG005251	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005251	MtrunA17_Chr1g0205861	49.505	101	51	0	3	103	2	102	4.01e-28	100
MsaG005251	MtrunA17_Chr7g0256011	52.809	89	41	1	1	89	1	88	6.98e-22	85.1
MsaG005251	MtrunA17_Chr1g0206771	48.611	72	37	0	11	82	10	81	3.74e-16	72.0
MsaG005251	MtrunA17_Chr1g0206771	46.269	67	36	0	15	81	93	159	9.50e-13	62.8
MsaG005251	MtrunA17_Chr3g0077891	44.578	83	45	1	11	92	93	175	1.52e-15	70.1
MsaG005251	MtrunA17_Chr5g0415031	41.558	77	45	0	9	85	35	111	1.67e-14	70.1
MsaG005251	MtrunA17_Chr3g0077941	45.122	82	44	1	12	92	93	174	3.56e-14	66.6
MsaG005251	MtrunA17_Chr8g0364231	42.308	78	44	1	8	85	34	110	1.11e-13	67.8
MsaG005251	MtrunA17_Chr1g0206781	38.095	84	52	0	8	91	2	85	2.24e-13	63.2
MsaG005251	MtrunA17_Chr1g0205811	43.210	81	43	1	17	94	14	94	7.78e-13	61.6
MsaG005251	MtrunA17_Chr4g0075971	40.187	107	60	2	16	121	88	191	9.39e-13	65.1
MsaG005251	MtrunA17_Chr4g0075971	32.743	113	72	2	20	128	175	287	2.70e-11	60.8
MsaG005251	MtrunA17_Chr3g0077881	42.169	83	47	1	11	92	93	175	1.46e-12	62.4
MsaG005251	MtrunA17_Chr4g0075861	38.318	107	62	2	16	121	88	191	3.47e-12	63.2
MsaG005251	MtrunA17_Chr4g0075861	33.628	113	71	2	20	128	175	287	8.12e-12	62.0
MsaG005251	MtrunA17_Chr1g0205801	46.875	64	34	0	15	78	10	73	5.05e-12	59.3
MsaG005251	MtrunA17_Chr6g0452001	41.176	68	40	0	13	80	59	126	1.82e-11	61.2
MsaG005251	MtrunA17_Chr1g0205821	45.902	61	33	0	18	78	100	160	2.09e-11	59.3
MsaG005251	MtrunA17_Chr1g0205821	46.774	62	33	0	17	78	13	74	3.43e-11	58.5
MsaG005251	MtrunA17_Chr1g0205831	48.276	58	30	0	21	78	6	63	7.59e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005251	AT3G01320.2	36.782	87	55	0	13	99	53	139	7.84e-13	65.9
MsaG005251	AT3G01320.1	36.782	87	55	0	13	99	53	139	8.00e-13	65.5
MsaG005251	AT1G70060.2	42.105	76	43	1	5	80	3	77	2.48e-12	64.3
MsaG005251	AT1G70060.1	42.105	76	43	1	5	80	3	77	2.48e-12	64.3
MsaG005251	AT1G24190.3	39.474	76	45	1	5	80	3	77	7.33e-12	62.8
MsaG005251	AT1G24190.1	39.474	76	45	1	5	80	3	77	7.99e-12	62.8
MsaG005251	AT1G24190.2	39.474	76	45	1	5	80	3	77	8.22e-12	62.8
MsaG005251	AT5G15040.1	42.188	64	37	0	15	78	1	64	1.86e-11	57.4
MsaG005251	AT5G15040.3	42.188	64	37	0	15	78	1	64	1.86e-11	57.4
MsaG005251	AT5G15040.2	42.188	64	37	0	15	78	1	64	1.86e-11	57.4

Find 15 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTCAAGCATTTGATTAAAT+TGG	0.233339	1:+79442099	None:intergenic
TAGAGATCTCTTTAGCATTA+AGG	0.235668	1:+79442199	None:intergenic
TGACCCTATTTGATCGAGTT+TGG	0.318141	1:+79442046	None:intergenic
ATTGCCAAACTCGATCAAAT+AGG	0.324623	1:-79442050	MsaT005251.1:CDS
AGTTGTGTTTCAAGATAAGA+TGG	0.435039	1:-79442348	MsaT005251.1:CDS
ATGCAAAACAGCACATCAAA+CGG	0.448989	1:-79442148	MsaT005251.1:CDS
TTGCCAAACTCGATCAAATA+GGG	0.483923	1:-79442049	MsaT005251.1:CDS
TGCAAAACAGCACATCAAAC+GGG	0.503847	1:-79442147	MsaT005251.1:CDS
CAAACGGGATCGATTCAAGT+TGG	0.545140	1:-79442132	MsaT005251.1:CDS
AAGGATTACAGTGGTGATGC+TGG	0.561781	1:-79442422	MsaT005251.1:CDS
ACGGGATCGATTCAAGTTGG+AGG	0.593315	1:-79442129	MsaT005251.1:CDS
AAAATGGAGGAGTTGTTCGA+TGG	0.597043	1:-79442251	MsaT005251.1:CDS
TCAGAAACTACTAAGCATGA+AGG	0.638522	1:-79442399	MsaT005251.1:CDS
GCAGAGAACATGAAGAAGCG+AGG	0.677188	1:-79441987	MsaT005251.1:CDS
CGACTGATGAAGGATTACAG+TGG	0.795711	1:-79442431	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	79441962	79442447	79441962	ID=MsaG005251
Chr1	mRNA	79441962	79442447	79441962	ID=MsaT005251.1;Parent=MsaG005251
Chr1	exon	79441962	79442447	79441962	ID=MsaT005251.1.exon1;Parent=MsaT005251.1
Chr1	CDS	79441962	79442447	79441962	ID=cds.MsaT005251.1;Parent=MsaT005251.1

Gene Sequence

>MsaT005251.1

ATGAAGGATTACAGTGGTGATGCTGGTCAGAAACTACTAAGCATGAAGGAAGCATCAGCGTTTGTAAATGATGTAAAAGTTGTGTTTCAAGATAAGATGGAAAAGTATGATGAGTTTGTGAAAGTTTTGTATGATTTCAAGGCTATGAGAATTGATCAAGAAAGTGCCACAGCAAAAATGGAGGAGTTGTTCGATGGACATTCAGATTTGATTATGAAATTAAACTCCTTAATGCTAAAGAGATCTCTAATGACTAACAATGATCATAATGACACTGATGCAAAACAGCACATCAAACGGGATCGATTCAAGTTGGAGGTAATTGACCAATTTAATCAAATGCTTGACAAACTAGAGAAATTTGAGTTGAAAGTGATTGCCAAACTCGATCAAATAGGGTCAAGTGCTCAACATTCGACTAAAGCAATATTAGACATTGCAGAGAACATGAAGAAGCGAGGCGTGACAAACGTGAGTCAAAAGTGA

Protein sequence

>MsaT005251.1

MKDYSGDAGQKLLSMKEASAFVNDVKVVFQDKMEKYDEFVKVLYDFKAMRIDQESATAKMEELFDGHSDLIMKLNSLMLKRSLMTNNDHNDTDAKQHIKRDRFKLEVIDQFNQMLDKLEKFELKVIAKLDQIGSSAQHSTKAILDIAENMKKRGVTNVSQK*