AlfalfaGEDB | MsaG005252

M. sativa ssp. caerulea / MsaG005252

KEGG: K07560 K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005252	AES62696.1	72.807	114	25	2	8	121	12	119	8.82e-47	157

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005252	sp\|O48686\|SNL3_ARATH	51.250	80	35	1	5	80	3	82	4.13e-20	88.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005252	tr\|G7IE26\|G7IE26_MEDTR	72.807	114	25	2	8	121	12	119	4.21e-47	157

TFs/TRs:

Gene ID	Type	Classification
MsaG005252	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004354	MsaG005252	0.806526	1.336572e-49	2.100199e-47
MsaG005092	MsaG005252	0.802186	1.061336e-48	1.507793e-46
MsaG005101	MsaG005252	0.802663	8.475066e-49	1.217264e-46
MsaG005252	MsaG009015	0.840579	1.477609e-57	5.874146e-55
MsaG005252	MsaG010284	0.819163	2.345016e-52	5.045200e-50
MsaG005252	MsaG012037	0.803250	6.416147e-49	9.340744e-47
MsaG005252	MsaG011980	0.807929	6.760877e-50	1.098414e-47
MsaG005252	MsaG014153	0.800529	2.309509e-48	3.160165e-46
MsaG005252	MsaG017057	0.810467	1.944478e-50	3.358726e-48
MsaG005252	MsaG017150	0.803686	5.216865e-49	7.671758e-47
MsaG005252	MsaG017303	0.818497	3.315618e-52	7.009891e-50
MsaG005252	MsaG018489	0.828945	1.214643e-54	3.410749e-52
MsaG005252	MsaG018786	0.824493	1.388063e-53	3.443660e-51
MsaG005252	MsaG018793	0.801883	1.224047e-48	1.727054e-46
MsaG005252	MsaG019308	0.807040	1.041660e-49	1.656730e-47
MsaG005252	MsaG019935	0.815810	1.323767e-51	2.612020e-49
MsaG005252	MsaG019985	0.808209	5.897877e-50	9.646420e-48
MsaG005252	MsaG020420	0.836765	1.414138e-56	4.994607e-54
MsaG005252	MsaG021017	0.803370	6.061264e-49	8.848686e-47
MsaG005252	MsaG024114	0.813967	3.377805e-51	6.362275e-49
MsaG005252	MsaG026478	0.817833	4.679879e-52	9.726049e-50
MsaG005252	MsaG026849	0.807924	6.777308e-50	1.100963e-47
MsaG005252	MsaG026929	0.803745	5.073058e-49	7.470555e-47
MsaG005252	MsaG028109	0.818226	3.816983e-52	8.013616e-50
MsaG005252	MsaG029349	0.805097	2.658570e-49	4.039682e-47
MsaG005252	MsaG029413	0.801679	1.347588e-48	1.892498e-46
MsaG005252	MsaG031153	0.822162	4.834149e-53	1.125944e-50
MsaG005252	MsaG033593	0.806371	1.440066e-49	2.254588e-47
MsaG005252	MsaG034946	0.810511	1.901922e-50	3.288721e-48
MsaG005252	MsaG040921	0.819858	1.630828e-52	3.573112e-50
MsaG005252	MsaG042054	0.805347	2.359040e-49	3.605398e-47
MsaG005252	MsaG042717	0.821024	8.832909e-53	1.996126e-50
MsaG005252	MsaG044957	0.813337	4.640762e-51	8.603902e-49
MsaG005252	MsaG045568	0.827351	2.929072e-54	7.865334e-52
MsaG005252	MsaG046431	0.804535	3.479440e-49	5.218466e-47
MsaG005252	MsaG046473	0.813088	5.260311e-51	9.692182e-49
MsaG005252	MsaG001950	0.803341	6.145852e-49	8.965961e-47
MsaG005252	MsaG020277	0.812358	7.586755e-51	1.372683e-48
MsaG005252	MsaG019828	0.802831	7.824229e-49	1.128089e-46
MsaG005252	MsaG028121	0.848255	1.303848e-59	6.659361e-57
MsaG005252	MsaG037798	0.803455	5.822871e-49	8.517125e-47
MsaG005252	MsaG036787	0.817062	6.964813e-52	1.419065e-49
MsaG005252	MsaG035795	0.850135	3.931090e-60	2.140182e-57

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005252	MtrunA17_Chr1g0205861	72.807	114	25	2	8	121	12	119	8.11e-51	157
MsaG005252	MtrunA17_Chr1g0206781	45.455	88	43	1	8	95	7	89	2.88e-22	85.1
MsaG005252	MtrunA17_Chr1g0206771	54.930	71	32	0	9	79	13	83	4.61e-20	80.9
MsaG005252	MtrunA17_Chr1g0206771	54.286	70	32	0	11	80	94	163	3.55e-18	76.3
MsaG005252	MtrunA17_Chr1g0205811	47.368	76	40	0	5	80	7	82	8.32e-20	79.0
MsaG005252	MtrunA17_Chr8g0364231	50.000	76	38	0	5	80	35	110	1.35e-19	83.6
MsaG005252	MtrunA17_Chr1g0205821	46.250	80	43	0	1	80	88	167	6.89e-19	77.8
MsaG005252	MtrunA17_Chr1g0205821	48.649	74	38	0	7	80	8	81	3.25e-14	65.9
MsaG005252	MtrunA17_Chr5g0415031	49.315	73	37	0	8	80	39	111	8.51e-19	81.3
MsaG005252	MtrunA17_Chr1g0205801	53.623	69	32	0	12	80	12	80	2.29e-18	74.7
MsaG005252	MtrunA17_Chr6g0452001	42.222	90	45	1	8	97	59	141	2.97e-18	79.7
MsaG005252	MtrunA17_Chr7g0256011	49.275	69	35	0	12	80	16	84	3.22e-18	74.7
MsaG005252	MtrunA17_Chr3g0077891	45.455	88	43	2	2	84	89	176	1.54e-17	74.3
MsaG005252	MtrunA17_Chr3g0077891	42.029	69	39	1	12	79	8	76	2.91e-11	57.8
MsaG005252	MtrunA17_Chr3g0077861	51.515	66	31	1	11	75	89	154	1.77e-15	68.9
MsaG005252	MtrunA17_Chr3g0077941	44.186	86	43	2	4	84	90	175	3.13e-15	68.2
MsaG005252	MtrunA17_Chr3g0077941	42.029	69	39	1	12	79	8	76	4.87e-11	57.4
MsaG005252	MtrunA17_Chr6g0452021	41.026	78	46	0	8	85	39	116	4.35e-15	70.5
MsaG005252	MtrunA17_Chr8g0364021	43.210	81	44	1	1	79	31	111	1.46e-14	67.8
MsaG005252	MtrunA17_Chr3g0077911	51.515	66	31	1	11	75	89	154	1.51e-14	66.2
MsaG005252	MtrunA17_Chr3g0077911	40.845	71	39	1	9	79	5	72	4.34e-11	57.0
MsaG005252	MtrunA17_Chr7g0218911	46.774	62	33	0	19	80	5	66	2.37e-14	64.7
MsaG005252	MtrunA17_Chr4g0075971	46.970	66	35	0	15	80	175	240	5.03e-14	67.4
MsaG005252	MtrunA17_Chr4g0075971	46.575	73	39	0	8	80	85	157	4.35e-13	64.7
MsaG005252	MtrunA17_Chr4g0075971	42.857	84	41	2	11	90	11	91	7.71e-12	61.2
MsaG005252	MtrunA17_Chr1g0205831	47.059	68	36	0	12	79	2	69	8.79e-14	64.7
MsaG005252	MtrunA17_Chr1g0205831	48.485	66	34	0	15	80	76	141	1.88e-13	63.5
MsaG005252	MtrunA17_Chr4g0075861	47.945	73	38	0	8	80	85	157	2.04e-13	65.5
MsaG005252	MtrunA17_Chr4g0075861	46.970	66	35	0	15	80	175	240	2.34e-13	65.5
MsaG005252	MtrunA17_Chr4g0075861	53.846	52	24	0	28	79	25	76	6.34e-11	58.5
MsaG005252	MtrunA17_Chr3g0077881	42.500	80	45	1	2	80	89	168	1.02e-12	61.6
MsaG005252	MtrunA17_Chr3g0077881	38.554	83	50	1	12	93	8	90	6.00e-12	59.7
MsaG005252	MtrunA17_Chr1g0209201	47.541	61	31	1	19	79	23	82	2.72e-12	60.1
MsaG005252	MtrunA17_Chr7g0218891	44.928	69	36	1	13	79	186	254	3.79e-12	61.6
MsaG005252	MtrunA17_Chr7g0218891	46.875	64	32	1	13	74	14	77	9.17e-12	60.5
MsaG005252	MtrunA17_Chr7g0218891	45.312	64	33	1	13	74	100	163	9.54e-12	60.5
MsaG005252	MtrunA17_Chr2g0328701	44.048	84	40	2	11	90	28	108	3.95e-12	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005252	AT1G24190.3	51.250	80	35	1	5	80	3	82	3.96e-21	88.2
MsaG005252	AT1G24190.1	51.250	80	35	1	5	80	3	82	4.20e-21	88.2
MsaG005252	AT1G24190.2	51.250	80	35	1	5	80	3	82	4.28e-21	88.2
MsaG005252	AT1G70060.2	52.055	73	35	0	8	80	10	82	1.42e-19	84.0
MsaG005252	AT1G70060.1	52.055	73	35	0	8	80	10	82	1.42e-19	84.0
MsaG005252	AT3G01320.1	47.945	73	38	0	8	80	53	125	4.32e-19	82.4
MsaG005252	AT3G01320.2	47.945	73	38	0	8	80	53	125	4.54e-19	82.4
MsaG005252	AT1G24200.1	36.765	136	72	5	1	130	1	128	2.46e-18	77.4
MsaG005252	AT5G15020.1	45.333	75	41	0	8	82	48	122	5.27e-18	79.3
MsaG005252	AT5G15020.2	45.333	75	41	0	8	82	48	122	5.42e-18	79.3
MsaG005252	AT1G59890.2	44.928	69	38	0	12	80	45	113	2.57e-15	71.6
MsaG005252	AT1G59890.4	44.928	69	38	0	12	80	45	113	2.67e-15	71.6
MsaG005252	AT4G12020.10	46.667	75	39	1	6	80	302	375	2.69e-15	71.6
MsaG005252	AT1G59890.1	44.928	69	38	0	12	80	45	113	2.75e-15	71.6
MsaG005252	AT4G12020.4	46.667	75	39	1	6	80	302	375	2.80e-15	71.6
MsaG005252	AT4G12020.3	46.667	75	39	1	6	80	302	375	2.82e-15	71.6
MsaG005252	AT1G59890.3	44.928	69	38	0	12	80	45	113	2.83e-15	71.6
MsaG005252	AT4G12020.6	46.667	75	39	1	6	80	302	375	2.84e-15	71.6
MsaG005252	AT4G12020.8	46.667	75	39	1	6	80	302	375	2.84e-15	71.6
MsaG005252	AT4G12020.11	46.667	75	39	1	6	80	302	375	2.90e-15	71.6
MsaG005252	AT4G12020.2	46.667	75	39	1	6	80	302	375	2.91e-15	71.6
MsaG005252	AT4G12020.5	46.667	75	39	1	6	80	235	308	2.93e-15	71.6
MsaG005252	AT4G12020.1	46.667	75	39	1	6	80	302	375	3.01e-15	71.6
MsaG005252	AT4G12020.9	46.667	75	39	1	6	80	302	375	3.01e-15	71.6
MsaG005252	AT4G12020.7	46.667	75	39	1	6	80	302	375	3.04e-15	71.6
MsaG005252	AT1G27250.1	39.024	82	50	0	8	89	17	98	5.83e-15	67.0
MsaG005252	AT5G15025.1	38.158	76	47	0	7	82	42	117	9.06e-15	66.2
MsaG005252	AT1G70030.3	41.558	77	43	1	8	82	18	94	3.19e-14	64.7
MsaG005252	AT1G70030.1	32.812	128	73	4	8	130	7	126	3.55e-14	65.5
MsaG005252	AT1G70030.2	41.558	77	43	1	8	82	18	94	6.47e-14	64.3
MsaG005252	AT1G27280.1	38.571	70	43	0	9	78	78	147	1.47e-12	62.4
MsaG005252	AT1G24230.1	43.478	69	38	1	7	74	9	77	1.49e-12	62.8
MsaG005252	AT1G10450.2	40.580	69	41	0	12	80	33	101	2.55e-12	63.2
MsaG005252	AT1G10450.1	40.580	69	41	0	12	80	33	101	2.55e-12	63.2
MsaG005252	AT1G10450.3	40.580	69	41	0	12	80	84	152	2.69e-12	63.2
MsaG005252	AT1G27220.1	36.486	74	47	0	8	81	10	83	3.37e-12	60.8
MsaG005252	AT1G23810.1	42.188	64	37	0	9	72	106	169	5.81e-12	61.2
MsaG005252	AT1G24210.1	40.000	75	44	1	7	81	9	82	4.55e-11	57.4
MsaG005252	AT1G24250.1	42.188	64	37	0	9	72	117	180	7.77e-11	58.2

Find 27 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGATAAAATATTAGAGATTT+TGG	0.199052	1:-79445883	MsaT005252.1:CDS
TGAAAGTCCTAAGCGATTAC+AGG	0.315902	1:-79446133	MsaT005252.1:CDS
AGGATGGAGGAGCTGTTTAA+AGG	0.330709	1:-79446077	MsaT005252.1:CDS
CTCTTGGCAATGCAGGATAA+AGG	0.369224	1:-79446245	None:intergenic
AAGAACCCACCTGATCGAAT+AGG	0.409769	1:-79445957	MsaT005252.1:CDS
AAACGCTATTGCTTCTTCCT+TGG	0.423218	1:+79446211	None:intergenic
CAGTGATGACACTGGAGAAA+AGG	0.440953	1:-79446000	MsaT005252.1:CDS
TCACTGATTTGAGATGGCTT+TGG	0.444928	1:+79446017	None:intergenic
GGATGGAGGAGCTGTTTAAA+GGG	0.456905	1:-79446076	MsaT005252.1:CDS
AGAACCCACCTGATCGAATA+GGG	0.457483	1:-79445956	MsaT005252.1:CDS
ATTTGCGACCCTATTCGATC+AGG	0.474283	1:+79445948	None:intergenic
TTGAGATGGCTTTGGCGTAA+AGG	0.479351	1:+79446025	None:intergenic
AGTTAAACTTCTGTCTCAAA+AGG	0.482056	1:-79445907	MsaT005252.1:CDS
TGCGACCCTATTCGATCAGG+TGG	0.509774	1:+79445951	None:intergenic
GCTAAAAGAATTGATATAGC+AGG	0.520011	1:-79446110	MsaT005252.1:CDS
GTGTCATCACTGATTTGAGA+TGG	0.558119	1:+79446011	None:intergenic
GAAAGTCCTAAGCGATTACA+GGG	0.564984	1:-79446132	MsaT005252.1:CDS
AGTTAAGTTTCAAGACAAGA+GGG	0.571152	1:-79446174	MsaT005252.1:CDS
AAGTTAAGTTTCAAGACAAG+AGG	0.577150	1:-79446175	MsaT005252.1:CDS
AGCAGGTGTGACAACAAGGA+TGG	0.585519	1:-79446093	MsaT005252.1:CDS
GCGACCCTATTCGATCAGGT+GGG	0.613931	1:+79445952	None:intergenic
ATATAGCAGGTGTGACAACA+AGG	0.623415	1:-79446097	MsaT005252.1:CDS
TCTCAAATCAGTGATGACAC+TGG	0.643527	1:-79446008	MsaT005252.1:CDS
AGGTGTGACAACAAGGATGG+AGG	0.648111	1:-79446090	MsaT005252.1:CDS
TAAAGGTGGTGGTGTAACCA+AGG	0.651615	1:-79446228	MsaT005252.1:CDS
GCAATGCAGGATAAAGGTGG+TGG	0.669430	1:-79446239	MsaT005252.1:CDS
TTGGCAATGCAGGATAAAGG+TGG	0.685630	1:-79446242	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	79445863	79446258	79445863	ID=MsaG005252
Chr1	mRNA	79445863	79446258	79445863	ID=MsaT005252.1;Parent=MsaG005252
Chr1	exon	79445863	79446258	79445863	ID=MsaT005252.1.exon1;Parent=MsaT005252.1
Chr1	CDS	79445863	79446258	79445863	ID=cds.MsaT005252.1;Parent=MsaT005252.1

Gene Sequence

>MsaT005252.1

ATGCAGGATAAAGGTGGTGGTGTAACCAAGGAAGAAGCAATAGCGTTTGTATGTGATGTAAAAGTTAAGTTTCAAGACAAGAGGGAAAAGTATGATGAATTTTTGAAAGTCCTAAGCGATTACAGGGCTAAAAGAATTGATATAGCAGGTGTGACAACAAGGATGGAGGAGCTGTTTAAAGGGCATTCAGATTTGATTTTGAAATTCAAATCCTTTACGCCAAAGCCATCTCAAATCAGTGATGACACTGGAGAAAAGGAAGAAGACACTGATGAACAGAAGAACCCACCTGATCGAATAGGGTCGCAAATTCAACTTATATCTCAAGAAGTTAAACTTCTGTCTCAAAAGGCTGATAAAATATTAGAGATTTTGGAGGAGAAGAAGAAAGTATAA

Protein sequence

>MsaT005252.1

MQDKGGGVTKEEAIAFVCDVKVKFQDKREKYDEFLKVLSDYRAKRIDIAGVTTRMEELFKGHSDLILKFKSFTPKPSQISDDTGEKEEDTDEQKNPPDRIGSQIQLISQEVKLLSQKADKILEILEEKKKV*