Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG005271 | XP_039690635.1 | 60.079 | 506 | 100 | 6 | 1 | 415 | 1 | 495 | 0.0 | 591 |
| MsaG005271 | XP_039690635.1 | 63.303 | 109 | 35 | 1 | 413 | 516 | 570 | 678 | 2.69e-35 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG005271 | sp|Q9SZL8|FRS5_ARATH | 28.037 | 428 | 228 | 12 | 60 | 413 | 76 | 497 | 8.02e-37 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG005271 | tr|A0A396JU01|A0A396JU01_MEDTR | 52.767 | 506 | 140 | 6 | 1 | 415 | 1 | 498 | 3.34e-166 | 497 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG005271 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG005271 | MtrunA17_Chr1g0203051 | 52.767 | 506 | 140 | 6 | 1 | 415 | 1 | 498 | 6.44e-170 | 497 |
| MsaG005271 | MtrunA17_Chr1g0203051 | 50.000 | 52 | 26 | 0 | 410 | 461 | 570 | 621 | 7.40e-11 | 65.1 |
| MsaG005271 | MtrunA17_Chr2g0287651 | 32.099 | 405 | 208 | 5 | 76 | 413 | 90 | 494 | 1.66e-68 | 238 |
| MsaG005271 | MtrunA17_Chr5g0448761 | 27.442 | 430 | 232 | 9 | 60 | 413 | 63 | 488 | 2.93e-39 | 153 |
| MsaG005271 | MtrunA17_Chr2g0324011 | 25.686 | 401 | 223 | 11 | 85 | 413 | 34 | 431 | 3.99e-36 | 142 |
| MsaG005271 | MtrunA17_Chr1g0202341 | 24.337 | 415 | 235 | 11 | 73 | 413 | 63 | 472 | 2.40e-35 | 141 |
| MsaG005271 | MtrunA17_Chr3g0082121 | 26.773 | 437 | 247 | 13 | 44 | 415 | 31 | 459 | 3.52e-34 | 137 |
| MsaG005271 | MtrunA17_Chr5g0441581 | 24.155 | 414 | 231 | 12 | 71 | 413 | 40 | 441 | 4.36e-32 | 131 |
| MsaG005271 | MtrunA17_Chr1g0198761 | 26.190 | 420 | 224 | 13 | 76 | 412 | 62 | 478 | 3.98e-31 | 129 |
| MsaG005271 | MtrunA17_Chr6g0458391 | 24.760 | 416 | 251 | 13 | 60 | 420 | 228 | 636 | 6.94e-31 | 128 |
| MsaG005271 | MtrunA17_Chr8g0363841 | 25.366 | 410 | 227 | 9 | 85 | 420 | 41 | 445 | 1.23e-30 | 127 |
| MsaG005271 | MtrunA17_Chr2g0287061 | 25.439 | 342 | 192 | 11 | 76 | 377 | 198 | 516 | 2.07e-30 | 126 |
| MsaG005271 | MtrunA17_Chr1g0207551 | 26.034 | 411 | 225 | 14 | 76 | 413 | 49 | 453 | 4.13e-30 | 125 |
| MsaG005271 | MtrunA17_Chr2g0296781 | 25.613 | 367 | 199 | 10 | 125 | 419 | 58 | 422 | 3.17e-29 | 122 |
| MsaG005271 | MtrunA17_Chr5g0431001 | 25.971 | 412 | 223 | 12 | 70 | 400 | 70 | 480 | 6.88e-28 | 117 |
| MsaG005271 | MtrunA17_Chr2g0276841 | 22.727 | 418 | 236 | 11 | 76 | 412 | 85 | 496 | 1.59e-27 | 117 |
| MsaG005271 | MtrunA17_Chr2g0329031 | 28.814 | 236 | 133 | 3 | 197 | 413 | 207 | 426 | 2.21e-27 | 117 |
| MsaG005271 | MtrunA17_Chr3g0080351 | 30.435 | 184 | 109 | 2 | 249 | 413 | 304 | 487 | 1.01e-26 | 115 |
| MsaG005271 | MtrunA17_Chr6g0477261 | 25.890 | 309 | 157 | 8 | 182 | 418 | 2 | 310 | 2.41e-26 | 114 |
| MsaG005271 | MtrunA17_Chr1g0203721 | 24.344 | 419 | 231 | 15 | 76 | 415 | 78 | 489 | 3.28e-26 | 114 |
| MsaG005271 | MtrunA17_Chr2g0290391 | 24.706 | 425 | 237 | 13 | 22 | 374 | 20 | 433 | 7.01e-26 | 112 |
| MsaG005271 | MtrunA17_Chr8g0389811 | 36.957 | 138 | 59 | 2 | 61 | 170 | 58 | 195 | 3.22e-25 | 103 |
| MsaG005271 | MtrunA17_Chr1g0164591 | 28.082 | 292 | 151 | 10 | 140 | 378 | 3 | 288 | 1.49e-24 | 104 |
| MsaG005271 | MtrunA17_Chr1g0196541 | 30.769 | 208 | 105 | 5 | 239 | 413 | 212 | 413 | 1.67e-24 | 108 |
| MsaG005271 | MtrunA17_Chr5g0448511 | 34.328 | 134 | 83 | 1 | 249 | 377 | 77 | 210 | 4.65e-24 | 106 |
| MsaG005271 | MtrunA17_Chr2g0291591 | 23.645 | 406 | 234 | 11 | 76 | 411 | 79 | 478 | 2.66e-23 | 103 |
| MsaG005271 | MtrunA17_Chr3g0118611 | 33.582 | 134 | 84 | 1 | 249 | 377 | 183 | 316 | 2.10e-20 | 95.5 |
| MsaG005271 | MtrunA17_Chr2g0294841 | 22.059 | 408 | 236 | 11 | 85 | 412 | 69 | 474 | 4.44e-20 | 94.4 |
| MsaG005271 | MtrunA17_Chr5g0440451 | 23.843 | 432 | 222 | 16 | 23 | 377 | 18 | 419 | 1.77e-19 | 92.8 |
| MsaG005271 | MtrunA17_Chr7g0258861 | 27.500 | 280 | 148 | 9 | 73 | 298 | 22 | 300 | 3.65e-19 | 88.6 |
| MsaG005271 | MtrunA17_Chr1g0171741 | 40.870 | 115 | 67 | 1 | 76 | 189 | 148 | 262 | 3.95e-19 | 87.4 |
| MsaG005271 | MtrunA17_Chr2g0291581 | 21.429 | 364 | 223 | 9 | 108 | 413 | 119 | 477 | 5.99e-15 | 78.2 |
| MsaG005271 | MtrunA17_Chr2g0331371 | 40.404 | 99 | 57 | 1 | 71 | 167 | 65 | 163 | 7.44e-15 | 73.9 |
| MsaG005271 | MtrunA17_Chr2g0308841 | 38.202 | 89 | 41 | 1 | 339 | 413 | 1 | 89 | 1.10e-14 | 74.3 |
| MsaG005271 | MtrunA17_Chr2g0308841 | 55.556 | 54 | 24 | 0 | 420 | 473 | 173 | 226 | 8.46e-13 | 68.9 |
| MsaG005271 | MtrunA17_Chr8g0340801 | 47.887 | 71 | 35 | 1 | 170 | 238 | 1 | 71 | 1.51e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG005271 | AT4G38180.1 | 28.037 | 428 | 228 | 12 | 60 | 413 | 76 | 497 | 8.15e-38 | 149 |
| MsaG005271 | AT4G15090.1 | 25.641 | 429 | 235 | 14 | 60 | 413 | 54 | 473 | 3.58e-34 | 138 |
| MsaG005271 | AT4G15090.5 | 25.641 | 429 | 235 | 14 | 60 | 413 | 54 | 473 | 3.58e-34 | 138 |
| MsaG005271 | AT4G15090.3 | 25.641 | 429 | 235 | 14 | 60 | 413 | 54 | 473 | 3.58e-34 | 138 |
| MsaG005271 | AT4G15090.2 | 25.641 | 429 | 235 | 14 | 60 | 413 | 54 | 473 | 3.58e-34 | 138 |
| MsaG005271 | AT4G15090.4 | 25.641 | 429 | 235 | 14 | 60 | 413 | 54 | 473 | 3.58e-34 | 138 |
| MsaG005271 | AT5G18960.2 | 25.954 | 393 | 209 | 14 | 76 | 413 | 226 | 591 | 1.29e-30 | 127 |
| MsaG005271 | AT5G18960.1 | 25.954 | 393 | 209 | 14 | 76 | 413 | 226 | 591 | 1.29e-30 | 127 |
| MsaG005271 | AT5G28530.4 | 25.723 | 346 | 238 | 9 | 35 | 368 | 30 | 368 | 1.09e-28 | 121 |
| MsaG005271 | AT5G28530.5 | 25.723 | 346 | 238 | 9 | 35 | 368 | 30 | 368 | 1.25e-28 | 120 |
| MsaG005271 | AT3G06250.2 | 31.148 | 183 | 113 | 3 | 244 | 413 | 385 | 567 | 2.63e-28 | 120 |
| MsaG005271 | AT3G06250.1 | 31.148 | 183 | 113 | 3 | 244 | 413 | 385 | 567 | 2.63e-28 | 120 |
| MsaG005271 | AT3G06250.3 | 31.148 | 183 | 113 | 3 | 244 | 413 | 385 | 567 | 2.63e-28 | 120 |
| MsaG005271 | AT1G10240.2 | 23.529 | 527 | 293 | 17 | 35 | 466 | 17 | 528 | 9.03e-28 | 118 |
| MsaG005271 | AT1G10240.1 | 23.529 | 527 | 293 | 17 | 35 | 466 | 17 | 528 | 9.03e-28 | 118 |
| MsaG005271 | AT3G22170.2 | 28.804 | 184 | 112 | 2 | 249 | 413 | 299 | 482 | 2.10e-25 | 111 |
| MsaG005271 | AT3G22170.1 | 28.804 | 184 | 112 | 2 | 249 | 413 | 299 | 482 | 2.10e-25 | 111 |
| MsaG005271 | AT5G28530.1 | 23.645 | 406 | 234 | 11 | 35 | 368 | 30 | 431 | 2.74e-25 | 111 |
| MsaG005271 | AT5G28530.3 | 23.645 | 406 | 234 | 11 | 35 | 368 | 30 | 431 | 2.89e-25 | 110 |
| MsaG005271 | AT5G28530.2 | 23.645 | 406 | 234 | 11 | 35 | 368 | 30 | 431 | 2.89e-25 | 110 |
| MsaG005271 | AT1G76320.3 | 25.304 | 411 | 228 | 12 | 73 | 413 | 9 | 410 | 1.01e-24 | 109 |
| MsaG005271 | AT1G76320.1 | 25.307 | 407 | 233 | 10 | 73 | 413 | 9 | 410 | 1.08e-24 | 109 |
| MsaG005271 | AT1G76320.4 | 25.307 | 407 | 233 | 10 | 73 | 413 | 9 | 410 | 1.08e-24 | 109 |
| MsaG005271 | AT1G76320.2 | 25.307 | 407 | 233 | 10 | 73 | 413 | 9 | 410 | 1.09e-24 | 109 |
| MsaG005271 | AT1G80010.1 | 25.000 | 368 | 203 | 11 | 76 | 378 | 110 | 469 | 1.91e-24 | 108 |
| MsaG005271 | AT2G32250.2 | 29.255 | 188 | 110 | 4 | 249 | 415 | 234 | 419 | 7.79e-22 | 100 |
| MsaG005271 | AT2G32250.4 | 29.255 | 188 | 110 | 4 | 249 | 415 | 234 | 419 | 7.79e-22 | 100 |
| MsaG005271 | AT2G32250.6 | 29.255 | 188 | 110 | 4 | 249 | 415 | 234 | 419 | 9.23e-22 | 100 |
| MsaG005271 | AT2G32250.1 | 29.255 | 188 | 110 | 4 | 249 | 415 | 234 | 419 | 9.23e-22 | 100 |
| MsaG005271 | AT2G32250.3 | 29.255 | 188 | 110 | 4 | 249 | 415 | 234 | 419 | 9.23e-22 | 100 |
| MsaG005271 | AT2G32250.5 | 29.255 | 188 | 110 | 4 | 249 | 415 | 234 | 419 | 9.31e-22 | 100 |
| MsaG005271 | AT2G32250.8 | 29.255 | 188 | 110 | 4 | 249 | 415 | 193 | 378 | 9.84e-22 | 100 |
| MsaG005271 | AT2G32250.7 | 29.255 | 188 | 110 | 4 | 249 | 415 | 193 | 378 | 1.01e-21 | 100 |
| MsaG005271 | AT2G27110.2 | 23.888 | 427 | 242 | 17 | 1 | 377 | 1 | 394 | 1.35e-21 | 99.8 |
| MsaG005271 | AT2G27110.1 | 23.888 | 427 | 242 | 17 | 1 | 377 | 1 | 394 | 1.35e-21 | 99.8 |
| MsaG005271 | AT1G52520.1 | 24.500 | 400 | 234 | 13 | 76 | 413 | 100 | 493 | 5.74e-21 | 97.8 |
| MsaG005271 | AT2G27110.3 | 31.343 | 134 | 87 | 1 | 249 | 377 | 116 | 249 | 4.99e-19 | 91.7 |
| MsaG005271 | AT4G19990.5 | 23.161 | 367 | 225 | 13 | 99 | 413 | 60 | 421 | 2.44e-17 | 86.3 |
| MsaG005271 | AT4G19990.6 | 23.161 | 367 | 225 | 13 | 99 | 413 | 60 | 421 | 2.46e-17 | 86.3 |
| MsaG005271 | AT4G19990.2 | 23.161 | 367 | 225 | 13 | 99 | 413 | 60 | 421 | 2.46e-17 | 86.3 |
| MsaG005271 | AT4G19990.3 | 23.161 | 367 | 225 | 13 | 99 | 413 | 60 | 421 | 2.65e-17 | 86.3 |
| MsaG005271 | AT4G19990.4 | 23.161 | 367 | 225 | 13 | 99 | 413 | 60 | 421 | 2.65e-17 | 86.3 |
| MsaG005271 | AT4G19990.7 | 23.161 | 367 | 225 | 13 | 99 | 413 | 74 | 435 | 2.73e-17 | 86.3 |
| MsaG005271 | AT4G19990.1 | 23.161 | 367 | 225 | 13 | 99 | 413 | 3 | 364 | 3.07e-17 | 85.9 |
| MsaG005271 | AT4G38170.1 | 24.607 | 191 | 125 | 2 | 249 | 420 | 79 | 269 | 6.77e-16 | 81.3 |
Find 104 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACTTCGGGACAAATTT+TGG | 0.120633 | 1:-79663113 | None:intergenic |
| GGAACACTTGACATTTATTT+TGG | 0.174483 | 1:+79662745 | MsaT005271.1:CDS |
| GAAGGTCTTCATTCTGAATT+TGG | 0.195876 | 1:+79663319 | MsaT005271.1:CDS |
| TGTTACCGTCTTGTCGAATT+TGG | 0.240334 | 1:+79663348 | MsaT005271.1:CDS |
| ATTTAAATGTCAACCGTTCT+TGG | 0.283454 | 1:-79663652 | None:intergenic |
| CCTCTGAACCTTCCGCATTA+AGG | 0.302211 | 1:-79661839 | None:intergenic |
| GATTTGTTGGTTGCAGAGTT+TGG | 0.306543 | 1:+79663185 | MsaT005271.1:CDS |
| CATAATCAAAGTGTCATATT+TGG | 0.317769 | 1:+79662882 | MsaT005271.1:CDS |
| ACATACACCGTTTGAACTTC+GGG | 0.324751 | 1:-79663124 | None:intergenic |
| CGTTCCATCACAAGACATTC+TGG | 0.328402 | 1:-79663758 | None:intergenic |
| CTCATACTTCCCATCCAAAA+AGG | 0.333792 | 1:-79662445 | None:intergenic |
| CCCAATGTAAGCGACATAAC+TGG | 0.364706 | 1:+79661807 | MsaT005271.1:CDS |
| CAACAATTTCTTGAGGTAAT+GGG | 0.366612 | 1:+79662954 | MsaT005271.1:CDS |
| TGCAAAAGATTCGAGACATT+TGG | 0.377751 | 1:+79663680 | MsaT005271.1:CDS |
| ATTCCTACGTCACGCATCTA+TGG | 0.380981 | 1:+79662540 | MsaT005271.1:CDS |
| ATTTGTTGGTTGCAGAGTTT+GGG | 0.383219 | 1:+79663186 | MsaT005271.1:CDS |
| GCAACAATTTCTTGAGGTAA+TGG | 0.384818 | 1:+79662953 | MsaT005271.1:CDS |
| GATTCCATCTTTAGCACGTT+TGG | 0.386420 | 1:-79663786 | None:intergenic |
| AACATACACCGTTTGAACTT+CGG | 0.391891 | 1:-79663125 | None:intergenic |
| CATCCACATATGCCACATTT+CGG | 0.392359 | 1:-79664126 | None:intergenic |
| CTCATCACCGTTTGTGTGCC+TGG | 0.393277 | 1:+79663054 | MsaT005271.1:CDS |
| GTACGGATGATATGATGTTT+TGG | 0.413634 | 1:+79662701 | MsaT005271.1:intron |
| CCCAGTTATGTCGCTTACAT+TGG | 0.430950 | 1:-79661808 | None:intergenic |
| ATATGACACTTTGATTATGA+TGG | 0.433821 | 1:-79662878 | None:intergenic |
| TGAAACTATGTGGGATTTGT+TGG | 0.439762 | 1:+79663172 | MsaT005271.1:CDS |
| AAGTTCAAACGGTGTATGTT+CGG | 0.449433 | 1:+79663128 | MsaT005271.1:CDS |
| GACATGTACAGTTCGTTGTA+TGG | 0.455744 | 1:+79662045 | MsaT005271.1:CDS |
| ACCCTAGGGATGATATTCAT+TGG | 0.456636 | 1:+79663615 | MsaT005271.1:intron |
| CCAGTTATGTCGCTTACATT+GGG | 0.461886 | 1:-79661807 | None:intergenic |
| TACCGTCTTGTCGAATTTGG+TGG | 0.463178 | 1:+79663351 | MsaT005271.1:CDS |
| CATAGAGAAGGTTCTGAGGT+TGG | 0.464384 | 1:+79662288 | MsaT005271.1:CDS |
| TCTTCATCTCGTAATGTAAG+TGG | 0.469724 | 1:+79664084 | MsaT005271.1:CDS |
| TTGGGTTGGAAAATAATAAG+TGG | 0.477062 | 1:+79663204 | MsaT005271.1:CDS |
| CCAATGTAAGCGACATAACT+GGG | 0.477737 | 1:+79661808 | MsaT005271.1:CDS |
| ATCACATATCAATGATGATC+GGG | 0.478750 | 1:+79664215 | MsaT005271.1:CDS |
| ATGTGGCATATGTGGATGTA+AGG | 0.482825 | 1:+79664131 | MsaT005271.1:CDS |
| GAGAGCAGAAGGCAACTAGT+AGG | 0.491224 | 1:+79662334 | MsaT005271.1:CDS |
| TTGAAGAGTTTGAAACTATG+TGG | 0.492334 | 1:+79663162 | MsaT005271.1:CDS |
| AACTAGTAGGTGTGGTTGCA+TGG | 0.492607 | 1:+79662347 | MsaT005271.1:CDS |
| ATGAAAATGATGAGGAAAGC+TGG | 0.493711 | 1:+79662516 | MsaT005271.1:CDS |
| CATGGACAATAGCTCTTGTT+CGG | 0.498690 | 1:+79661987 | MsaT005271.1:CDS |
| TGCATTTCTAGCCAAGTGCC+AGG | 0.504434 | 1:-79663072 | None:intergenic |
| TGAAGAGTTTGAAACTATGT+GGG | 0.510185 | 1:+79663163 | MsaT005271.1:CDS |
| CCGTTTGTGTGCCTGGCACT+TGG | 0.510520 | 1:+79663061 | MsaT005271.1:CDS |
| CTCGTAGACGACAAGACTGC+CGG | 0.510532 | 1:-79664161 | None:intergenic |
| TTGGAGGCACATGATTAAAG+AGG | 0.517727 | 1:+79662720 | MsaT005271.1:CDS |
| TCGCTCATCTTCCTATGTGC+AGG | 0.519995 | 1:-79662477 | None:intergenic |
| AATTTGTCCCGAAGTTCAAA+CGG | 0.526146 | 1:+79663117 | MsaT005271.1:CDS |
| TGGACCAAACGTGCTAAAGA+TGG | 0.531683 | 1:+79663782 | MsaT005271.1:CDS |
| GTGGATGTAAGGGTCACAAC+CGG | 0.532816 | 1:+79664142 | MsaT005271.1:CDS |
| TGCGGAAGGTTCAGAGGTAG+AGG | 0.537083 | 1:+79661845 | MsaT005271.1:CDS |
| ACCTTTGTTTGTCATAGAGA+AGG | 0.542041 | 1:+79662276 | MsaT005271.1:CDS |
| ATATTTGGTAGTGCGATTGT+TGG | 0.542911 | 1:+79662897 | MsaT005271.1:CDS |
| AAGCGGAGTTCGCCGAAATG+TGG | 0.543560 | 1:+79664114 | MsaT005271.1:CDS |
| TCGCCGAAATGTGGCATATG+TGG | 0.547405 | 1:+79664123 | MsaT005271.1:CDS |
| GTGCAACTTTGACGATGAAA+CGG | 0.547511 | 1:+79662068 | MsaT005271.1:CDS |
| ACATGTACAGTTCGTTGTAT+GGG | 0.550841 | 1:+79662046 | MsaT005271.1:CDS |
| CGATAGGAAAAGAGAGCAGA+AGG | 0.554726 | 1:+79662323 | MsaT005271.1:CDS |
| GTTGGTTGCAGAGTTTGGGT+TGG | 0.554814 | 1:+79663190 | MsaT005271.1:CDS |
| AATTTATGCGGTTGTGTACG+TGG | 0.558182 | 1:+79662195 | MsaT005271.1:CDS |
| ATGAAGACCTTCACACCTTG+AGG | 0.568942 | 1:-79663308 | None:intergenic |
| CATCACATATCAATGATGAT+CGG | 0.574371 | 1:+79664214 | MsaT005271.1:CDS |
| CCGCAACGGCTTAAGAAAAG+AGG | 0.575682 | 1:+79664045 | MsaT005271.1:CDS |
| CCAAGTGCCAGGCACACAAA+CGG | 0.576385 | 1:-79663061 | None:intergenic |
| CAACGGCTTAAGAAAAGAGG+TGG | 0.576611 | 1:+79664048 | MsaT005271.1:CDS |
| ACATACGTAGTTACAAATGC+AGG | 0.577104 | 1:-79663845 | None:intergenic |
| GGAGAGTGATGTATGTTCCT+CGG | 0.577170 | 1:+79662008 | MsaT005271.1:CDS |
| TGAAACGGCGGTTGATTGCA+TGG | 0.577332 | 1:+79662083 | MsaT005271.1:CDS |
| ACCTTCTCTATGACAAACAA+AGG | 0.579087 | 1:-79662277 | None:intergenic |
| CAGAAGGCAACTAGTAGGTG+TGG | 0.587238 | 1:+79662339 | MsaT005271.1:CDS |
| GTACACGTTGACGCTGGTAG+CGG | 0.591900 | 1:+79662381 | MsaT005271.1:CDS |
| TTGACGCTGGTAGCGGTCGA+TGG | 0.592302 | 1:+79662388 | MsaT005271.1:CDS |
| TCTTGAGGTAATGGGCGGGA+AGG | 0.592733 | 1:+79662962 | MsaT005271.1:CDS |
| CCTTAATGCGGAAGGTTCAG+AGG | 0.595778 | 1:+79661839 | MsaT005271.1:CDS |
| CAATTTCTTGAGGTAATGGG+CGG | 0.605044 | 1:+79662957 | MsaT005271.1:CDS |
| AGGCACATGATTAAAGAGGA+TGG | 0.606667 | 1:+79662724 | MsaT005271.1:CDS |
| ATCCACCAAATTCGACAAGA+CGG | 0.610939 | 1:-79663353 | None:intergenic |
| AATTTCTTGAGGTAATGGGC+GGG | 0.612807 | 1:+79662958 | MsaT005271.1:CDS |
| GGATGCAACCTTAATGCGGA+AGG | 0.614546 | 1:+79661831 | MsaT005271.1:CDS |
| AAAGTTTAGGTAATCCGCAA+CGG | 0.615547 | 1:+79664031 | MsaT005271.1:CDS |
| AGGGAATGCTACCTGCACAT+AGG | 0.625271 | 1:+79662466 | MsaT005271.1:CDS |
| AGAACAACCTCAAGGTGTGA+AGG | 0.629045 | 1:+79663301 | MsaT005271.1:CDS |
| CACAAACGGTGATGAGCATG+TGG | 0.629443 | 1:-79663047 | None:intergenic |
| TTGTCATAGAGAAGGTTCTG+AGG | 0.635522 | 1:+79662284 | MsaT005271.1:CDS |
| TAGTTACAAATGCAGGATCA+CGG | 0.636049 | 1:-79663838 | None:intergenic |
| AATACCAAATGAAAATGATG+AGG | 0.636392 | 1:+79662508 | MsaT005271.1:CDS |
| AAACCATAGATGCGTGACGT+AGG | 0.642746 | 1:-79662543 | None:intergenic |
| TTGGAAGTAATGTTGCCGAT+AGG | 0.643843 | 1:+79662307 | MsaT005271.1:CDS |
| CTTGTGTCAGTTATAACTGA+CGG | 0.648817 | 1:+79662987 | MsaT005271.1:CDS |
| GTCTTCGACATCTTCATCCG+AGG | 0.652680 | 1:-79662025 | None:intergenic |
| TGTGGCATATGTGGATGTAA+GGG | 0.657824 | 1:+79664132 | MsaT005271.1:CDS |
| CTGGTTTCAGAACAACCTCA+AGG | 0.660159 | 1:+79663293 | MsaT005271.1:CDS |
| ATTCAAGTACACGTTGACGC+TGG | 0.666323 | 1:+79662375 | MsaT005271.1:CDS |
| ACTGCCAGAATGTCTTGTGA+TGG | 0.666806 | 1:+79663754 | MsaT005271.1:CDS |
| AAGCGTGTTGTTAAGAAACG+AGG | 0.667366 | 1:+79662233 | MsaT005271.1:CDS |
| CAATGTAAGCGACATAACTG+GGG | 0.679402 | 1:+79661809 | MsaT005271.1:CDS |
| ACATGTAAGATATGTTCACA+AGG | 0.686637 | 1:-79663707 | None:intergenic |
| GCTGCTGCAACAATTTCTTG+AGG | 0.689591 | 1:+79662947 | MsaT005271.1:CDS |
| GTGTTGTTAAGAAACGAGGA+TGG | 0.695502 | 1:+79662237 | MsaT005271.1:CDS |
| CAACTTTGACGATGAAACGG+CGG | 0.704083 | 1:+79662071 | MsaT005271.1:CDS |
| AATGTCTTGTGATGGAACGA+TGG | 0.705741 | 1:+79663762 | MsaT005271.1:CDS |
| AATGTAAGCGACATAACTGG+GGG | 0.709527 | 1:+79661810 | MsaT005271.1:CDS |
| AAACTGAGGACACTTACGTG+TGG | 0.737471 | 1:+79662925 | MsaT005271.1:CDS |
| GATTGTTGGTGATGAAACTG+AGG | 0.758154 | 1:+79662911 | MsaT005271.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 79661771 | 79664245 | 79661771 | ID=MsaG005271 |
| Chr1 | mRNA | 79661771 | 79664245 | 79661771 | ID=MsaT005271.1;Parent=MsaG005271 |
| Chr1 | exon | 79661771 | 79661866 | 79661771 | ID=MsaT005271.1.exon1;Parent=MsaT005271.1 |
| Chr1 | CDS | 79661771 | 79661866 | 79661771 | ID=cds.MsaT005271.1;Parent=MsaT005271.1 |
| Chr1 | exon | 79661985 | 79662113 | 79661985 | ID=MsaT005271.1.exon2;Parent=MsaT005271.1 |
| Chr1 | CDS | 79661985 | 79662113 | 79661985 | ID=cds.MsaT005271.1;Parent=MsaT005271.1 |
| Chr1 | exon | 79662189 | 79662619 | 79662189 | ID=MsaT005271.1.exon3;Parent=MsaT005271.1 |
| Chr1 | CDS | 79662189 | 79662619 | 79662189 | ID=cds.MsaT005271.1;Parent=MsaT005271.1 |
| Chr1 | exon | 79662702 | 79662782 | 79662702 | ID=MsaT005271.1.exon4;Parent=MsaT005271.1 |
| Chr1 | CDS | 79662702 | 79662782 | 79662702 | ID=cds.MsaT005271.1;Parent=MsaT005271.1 |
| Chr1 | exon | 79662845 | 79663240 | 79662845 | ID=MsaT005271.1.exon5;Parent=MsaT005271.1 |
| Chr1 | CDS | 79662845 | 79663240 | 79662845 | ID=cds.MsaT005271.1;Parent=MsaT005271.1 |
| Chr1 | exon | 79663285 | 79663395 | 79663285 | ID=MsaT005271.1.exon6;Parent=MsaT005271.1 |
| Chr1 | CDS | 79663285 | 79663395 | 79663285 | ID=cds.MsaT005271.1;Parent=MsaT005271.1 |
| Chr1 | exon | 79663622 | 79663884 | 79663622 | ID=MsaT005271.1.exon7;Parent=MsaT005271.1 |
| Chr1 | CDS | 79663622 | 79663884 | 79663622 | ID=cds.MsaT005271.1;Parent=MsaT005271.1 |
| Chr1 | exon | 79664022 | 79664245 | 79664022 | ID=MsaT005271.1.exon8;Parent=MsaT005271.1 |
| Chr1 | CDS | 79664022 | 79664245 | 79664022 | ID=cds.MsaT005271.1;Parent=MsaT005271.1 |
| Gene Sequence |
| Protein sequence |